data_1PTJ # _model_server_result.job_id 9ScCoqbCGvcCuMAdwMSqIQ _model_server_result.datetime_utc '2024-11-28 06:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ptj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 1PTJ # _exptl.entry_id 1PTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PTJ _cell.length_a 72.089 _cell.length_b 74.698 _cell.length_c 205.014 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1PTJ _atom_sites.fract_transf_matrix[1][1] 0.013872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SND A 1 500 500 SND SND . E 4 GOL A 1 402 402 GOL GOL . F 4 GOL A 1 403 403 GOL GOL . G 4 GOL B 1 401 401 GOL GOL . H 5 NAP C 1 300 300 NAP NAP . I 6 HOH A 1 501 1 HOH HOH . I 6 HOH A 2 502 2 HOH HOH . I 6 HOH A 3 503 5 HOH HOH . I 6 HOH A 4 504 13 HOH HOH . I 6 HOH A 5 505 14 HOH HOH . I 6 HOH A 6 506 19 HOH HOH . I 6 HOH A 7 507 25 HOH HOH . I 6 HOH A 8 508 36 HOH HOH . I 6 HOH A 9 509 39 HOH HOH . I 6 HOH A 10 510 44 HOH HOH . I 6 HOH A 11 511 45 HOH HOH . I 6 HOH A 12 512 48 HOH HOH . I 6 HOH A 13 513 62 HOH HOH . I 6 HOH A 14 514 63 HOH HOH . I 6 HOH A 15 515 71 HOH HOH . I 6 HOH A 16 516 76 HOH HOH . I 6 HOH A 17 517 78 HOH HOH . I 6 HOH A 18 518 81 HOH HOH . I 6 HOH A 19 519 82 HOH HOH . I 6 HOH A 20 520 87 HOH HOH . I 6 HOH A 21 521 89 HOH HOH . I 6 HOH A 22 522 92 HOH HOH . I 6 HOH A 23 523 93 HOH HOH . I 6 HOH A 24 524 94 HOH HOH . I 6 HOH A 25 525 95 HOH HOH . I 6 HOH A 26 526 96 HOH HOH . I 6 HOH A 27 527 99 HOH HOH . I 6 HOH A 28 528 100 HOH HOH . I 6 HOH A 29 529 104 HOH HOH . I 6 HOH A 30 530 107 HOH HOH . I 6 HOH A 31 531 114 HOH HOH . I 6 HOH A 32 532 115 HOH HOH . I 6 HOH A 33 533 125 HOH HOH . I 6 HOH A 34 534 127 HOH HOH . I 6 HOH A 35 535 128 HOH HOH . I 6 HOH A 36 536 133 HOH HOH . I 6 HOH A 37 537 137 HOH HOH . I 6 HOH A 38 538 140 HOH HOH . I 6 HOH A 39 539 142 HOH HOH . I 6 HOH A 40 540 143 HOH HOH . I 6 HOH A 41 541 144 HOH HOH . I 6 HOH A 42 542 148 HOH HOH . J 6 HOH B 1 402 3 HOH HOH . J 6 HOH B 2 403 4 HOH HOH . J 6 HOH B 3 404 6 HOH HOH . J 6 HOH B 4 405 7 HOH HOH . J 6 HOH B 5 406 8 HOH HOH . J 6 HOH B 6 407 9 HOH HOH . J 6 HOH B 7 408 10 HOH HOH . J 6 HOH B 8 409 15 HOH HOH . J 6 HOH B 9 410 16 HOH HOH . J 6 HOH B 10 411 18 HOH HOH . J 6 HOH B 11 412 20 HOH HOH . J 6 HOH B 12 413 21 HOH HOH . J 6 HOH B 13 414 24 HOH HOH . J 6 HOH B 14 415 28 HOH HOH . J 6 HOH B 15 416 29 HOH HOH . J 6 HOH B 16 417 30 HOH HOH . J 6 HOH B 17 418 31 HOH HOH . J 6 HOH B 18 419 32 HOH HOH . J 6 HOH B 19 420 33 HOH HOH . J 6 HOH B 20 421 35 HOH HOH . J 6 HOH B 21 422 38 HOH HOH . J 6 HOH B 22 423 40 HOH HOH . J 6 HOH B 23 424 41 HOH HOH . J 6 HOH B 24 425 42 HOH HOH . J 6 HOH B 25 426 43 HOH HOH . J 6 HOH B 26 427 46 HOH HOH . J 6 HOH B 27 428 47 HOH HOH . J 6 HOH B 28 429 49 HOH HOH . J 6 HOH B 29 430 50 HOH HOH . J 6 HOH B 30 431 51 HOH HOH . J 6 HOH B 31 432 53 HOH HOH . J 6 HOH B 32 433 54 HOH HOH . J 6 HOH B 33 434 57 HOH HOH . J 6 HOH B 34 435 59 HOH HOH . J 6 HOH B 35 436 60 HOH HOH . J 6 HOH B 36 437 61 HOH HOH . J 6 HOH B 37 438 64 HOH HOH . J 6 HOH B 38 439 66 HOH HOH . J 6 HOH B 39 440 67 HOH HOH . J 6 HOH B 40 441 68 HOH HOH . J 6 HOH B 41 442 69 HOH HOH . J 6 HOH B 42 443 70 HOH HOH . J 6 HOH B 43 444 72 HOH HOH . J 6 HOH B 44 445 73 HOH HOH . J 6 HOH B 45 446 77 HOH HOH . J 6 HOH B 46 447 79 HOH HOH . J 6 HOH B 47 448 84 HOH HOH . J 6 HOH B 48 449 85 HOH HOH . J 6 HOH B 49 450 86 HOH HOH . J 6 HOH B 50 451 88 HOH HOH . J 6 HOH B 51 452 90 HOH HOH . J 6 HOH B 52 453 97 HOH HOH . J 6 HOH B 53 454 98 HOH HOH . J 6 HOH B 54 455 101 HOH HOH . J 6 HOH B 55 456 103 HOH HOH . J 6 HOH B 56 457 105 HOH HOH . J 6 HOH B 57 458 106 HOH HOH . J 6 HOH B 58 459 108 HOH HOH . J 6 HOH B 59 460 110 HOH HOH . J 6 HOH B 60 461 111 HOH HOH . J 6 HOH B 61 462 113 HOH HOH . J 6 HOH B 62 463 116 HOH HOH . J 6 HOH B 63 464 117 HOH HOH . J 6 HOH B 64 465 118 HOH HOH . J 6 HOH B 65 466 119 HOH HOH . J 6 HOH B 66 467 120 HOH HOH . J 6 HOH B 67 468 122 HOH HOH . J 6 HOH B 68 469 123 HOH HOH . J 6 HOH B 69 470 124 HOH HOH . J 6 HOH B 70 471 126 HOH HOH . J 6 HOH B 71 472 130 HOH HOH . J 6 HOH B 72 473 131 HOH HOH . J 6 HOH B 73 474 134 HOH HOH . J 6 HOH B 74 475 135 HOH HOH . J 6 HOH B 75 476 136 HOH HOH . J 6 HOH B 76 477 139 HOH HOH . J 6 HOH B 77 478 145 HOH HOH . J 6 HOH B 78 479 146 HOH HOH . J 6 HOH B 79 480 147 HOH HOH . K 6 HOH C 1 301 11 HOH HOH . K 6 HOH C 2 302 12 HOH HOH . K 6 HOH C 3 303 17 HOH HOH . K 6 HOH C 4 304 22 HOH HOH . K 6 HOH C 5 305 23 HOH HOH . K 6 HOH C 6 306 26 HOH HOH . K 6 HOH C 7 307 27 HOH HOH . K 6 HOH C 8 308 52 HOH HOH . K 6 HOH C 9 309 55 HOH HOH . K 6 HOH C 10 310 56 HOH HOH . K 6 HOH C 11 311 58 HOH HOH . K 6 HOH C 12 312 65 HOH HOH . K 6 HOH C 13 313 74 HOH HOH . K 6 HOH C 14 314 75 HOH HOH . K 6 HOH C 15 315 80 HOH HOH . K 6 HOH C 16 316 83 HOH HOH . K 6 HOH C 17 317 91 HOH HOH . K 6 HOH C 18 318 102 HOH HOH . K 6 HOH C 19 319 109 HOH HOH . K 6 HOH C 20 320 112 HOH HOH . K 6 HOH C 21 321 121 HOH HOH . K 6 HOH C 22 322 129 HOH HOH . K 6 HOH C 23 323 132 HOH HOH . K 6 HOH C 24 324 138 HOH HOH . K 6 HOH C 25 325 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 14.186 16.91 39.387 1 92.08 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . F 4 12.661 17.4 39.52 1 90.22 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . F 4 15.223 17.642 38.808 1 92.61 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . F 4 15.148 17.617 37.464 1 92.99 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . F 4 15.916 18.127 39.676 1 92.86 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . F 4 16.458 18.504 41.099 1 91.38 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #