data_1PTR # _model_server_result.job_id MGQCysY1nL35MgdyfBEguQ _model_server_result.datetime_utc '2024-11-05 23:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ptr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 1PTR # _exptl.entry_id 1PTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 13-ACETYLPHORBOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PTR _cell.length_a 32.4 _cell.length_b 63.5 _cell.length_c 65.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 63.5 65.5 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B ZN ZN . A ZN 1 1_555 A ND1 HIS 1 A HIS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 B ZN ZN . A ZN 1 1_555 A SG CYS 31 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 B ZN ZN . A ZN 1 1_555 A SG CYS 34 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 B ZN ZN . A ZN 1 1_555 A SG CYS 50 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 C ZN ZN . A ZN 2 1_555 A SG CYS 14 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 C ZN ZN . A ZN 2 1_555 A SG CYS 17 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 C ZN ZN . A ZN 2 1_555 A ND1 HIS 39 A HIS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 C ZN ZN . A ZN 2 1_555 A SG CYS 42 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'C22 H30 O7' _chem_comp.formula_weight 406.469 _chem_comp.id PRB _chem_comp.mon_nstd_flag . _chem_comp.name 13-ACETYLPHORBOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PRB doub 237 n n C1 C10 PRB sing 238 n n C1 H1 PRB sing 239 n n C2 C3 PRB sing 240 n n C2 C19 PRB sing 241 n n C3 O3 PRB doub 242 n n C3 C4 PRB sing 243 n n C4 O4 PRB sing 244 n n C4 C5 PRB sing 245 n n C4 C10 PRB sing 246 n n O4 HO4 PRB sing 247 n n C5 C6 PRB sing 248 n n C5 H51 PRB sing 249 n n C5 H52 PRB sing 250 n n C6 C7 PRB doub 251 n n C6 C20 PRB sing 252 n n C7 C8 PRB sing 253 n n C7 H7 PRB sing 254 n n C8 C9 PRB sing 255 n n C8 C14 PRB sing 256 n n C8 H8 PRB sing 257 n n C9 O9 PRB sing 258 n n C9 C10 PRB sing 259 n n C9 C11 PRB sing 260 n n O9 HO9 PRB sing 261 n n C10 H10 PRB sing 262 n n C11 C12 PRB sing 263 n n C11 C18 PRB sing 264 n n C11 H11 PRB sing 265 n n C12 O12 PRB sing 266 n n C12 C13 PRB sing 267 n n C12 H12 PRB sing 268 n n O12 HO12 PRB sing 269 n n C13 C14 PRB sing 270 n n C13 C15 PRB sing 271 n n C13 OA1 PRB sing 272 n n C14 C15 PRB sing 273 n n C14 H14 PRB sing 274 n n C15 C16 PRB sing 275 n n C15 C17 PRB sing 276 n n C16 H161 PRB sing 277 n n C16 H162 PRB sing 278 n n C16 H163 PRB sing 279 n n C17 H171 PRB sing 280 n n C17 H172 PRB sing 281 n n C17 H173 PRB sing 282 n n C18 H181 PRB sing 283 n n C18 H182 PRB sing 284 n n C18 H183 PRB sing 285 n n C19 H191 PRB sing 286 n n C19 H192 PRB sing 287 n n C19 H193 PRB sing 288 n n C20 O20 PRB sing 289 n n C20 H201 PRB sing 290 n n C20 H202 PRB sing 291 n n O20 HO20 PRB sing 292 n n OA1 CA1 PRB sing 293 n n CA1 OA2 PRB doub 294 n n CA1 CA2 PRB sing 295 n n CA2 HA21 PRB sing 296 n n CA2 HA22 PRB sing 297 n n CA2 HA23 PRB sing 298 n n # _atom_sites.entry_id 1PTR _atom_sites.fract_transf_matrix[1][1] 0.030864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1 1 ZN ZN . C 2 ZN A 1 2 2 ZN ZN . D 3 PRB A 1 3 3 PRB PRB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PRB . . . D 3 10.006 23.859 22.583 1 39.14 ? C1 PRB 3 A 1 HETATM 2 C C2 PRB . . . D 3 9.089 22.889 22.944 1 40.13 ? C2 PRB 3 A 1 HETATM 3 C C3 PRB . . . D 3 8.773 23.057 24.276 1 38.01 ? C3 PRB 3 A 1 HETATM 4 O O3 PRB . . . D 3 7.906 22.393 24.869 1 39.73 ? O3 PRB 3 A 1 HETATM 5 C C4 PRB . . . D 3 9.456 24.274 24.872 1 36.52 ? C4 PRB 3 A 1 HETATM 6 O O4 PRB . . . D 3 8.414 25.238 25.031 1 36.1 ? O4 PRB 3 A 1 HETATM 7 C C5 PRB . . . D 3 10.134 23.934 26.222 1 32.11 ? C5 PRB 3 A 1 HETATM 8 C C6 PRB . . . D 3 11.376 24.688 26.598 1 29.38 ? C6 PRB 3 A 1 HETATM 9 C C7 PRB . . . D 3 11.695 25.936 26.067 1 28.79 ? C7 PRB 3 A 1 HETATM 10 C C8 PRB . . . D 3 10.824 26.691 25.082 1 32.12 ? C8 PRB 3 A 1 HETATM 11 C C9 PRB . . . D 3 10.821 26.183 23.597 1 34.14 ? C9 PRB 3 A 1 HETATM 12 O O9 PRB . . . D 3 12.128 26.253 23.04 1 36.99 ? O9 PRB 3 A 1 HETATM 13 C C10 PRB . . . D 3 10.544 24.583 23.796 1 37.18 ? C10 PRB 3 A 1 HETATM 14 C C11 PRB . . . D 3 9.795 27.092 22.796 1 35.1 ? C11 PRB 3 A 1 HETATM 15 C C12 PRB . . . D 3 10.33 28.536 22.726 1 34.19 ? C12 PRB 3 A 1 HETATM 16 O O12 PRB . . . D 3 9.289 29.473 22.462 1 33.08 ? O12 PRB 3 A 1 HETATM 17 C C13 PRB . . . D 3 11.024 29.055 24.004 1 35.63 ? C13 PRB 3 A 1 HETATM 18 C C14 PRB . . . D 3 11.195 28.204 25.304 1 32.51 ? C14 PRB 3 A 1 HETATM 19 C C15 PRB . . . D 3 10.431 29.462 25.395 1 34.07 ? C15 PRB 3 A 1 HETATM 20 C C16 PRB . . . D 3 8.968 29.179 25.814 1 29.96 ? C16 PRB 3 A 1 HETATM 21 C C17 PRB . . . D 3 11.008 30.67 26.154 1 30.56 ? C17 PRB 3 A 1 HETATM 22 C C18 PRB . . . D 3 9.46 26.699 21.364 1 37.5 ? C18 PRB 3 A 1 HETATM 23 C C19 PRB . . . D 3 8.52 21.842 22.024 1 38.39 ? C19 PRB 3 A 1 HETATM 24 C C20 PRB . . . D 3 12.272 24.147 27.625 1 26.79 ? C20 PRB 3 A 1 HETATM 25 O O20 PRB . . . D 3 12.543 22.751 27.509 1 16.4 ? O20 PRB 3 A 1 HETATM 26 O OA1 PRB . . . D 3 12.04 30.019 23.705 1 38.43 ? OA1 PRB 3 A 1 HETATM 27 C CA1 PRB . . . D 3 13.11 29.782 22.769 1 41.35 ? CA1 PRB 3 A 1 HETATM 28 O OA2 PRB . . . D 3 13.387 28.621 22.424 1 37.45 ? OA2 PRB 3 A 1 HETATM 29 C CA2 PRB . . . D 3 13.899 30.94 22.171 1 41.34 ? CA2 PRB 3 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #