data_1PU9 # _model_server_result.job_id 8xZPtIqnZB7mff4UQz-4CA _model_server_result.datetime_utc '2025-09-01 00:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1PU9 # _exptl.entry_id 1PU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PU9 _cell.length_a 64.73 _cell.length_b 64.73 _cell.length_c 96.416 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1PU9 _atom_sites.fract_transf_matrix[1][1] 0.015449 _atom_sites.fract_transf_matrix[1][2] 0.008919 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 COA A 1 401 401 COA COA . D 4 HOH A 1 402 1 HOH HOH . D 4 HOH A 2 403 2 HOH HOH . D 4 HOH A 3 404 3 HOH HOH . D 4 HOH A 4 405 4 HOH HOH . D 4 HOH A 5 406 5 HOH HOH . D 4 HOH A 6 407 6 HOH HOH . D 4 HOH A 7 408 7 HOH HOH . D 4 HOH A 8 409 8 HOH HOH . D 4 HOH A 9 410 9 HOH HOH . D 4 HOH A 10 411 10 HOH HOH . D 4 HOH A 11 412 11 HOH HOH . D 4 HOH A 12 413 12 HOH HOH . D 4 HOH A 13 414 13 HOH HOH . D 4 HOH A 14 415 14 HOH HOH . D 4 HOH A 15 416 15 HOH HOH . D 4 HOH A 16 417 16 HOH HOH . D 4 HOH A 17 418 17 HOH HOH . D 4 HOH A 18 419 18 HOH HOH . D 4 HOH A 19 420 19 HOH HOH . D 4 HOH A 20 421 20 HOH HOH . D 4 HOH A 21 422 21 HOH HOH . D 4 HOH A 22 423 23 HOH HOH . D 4 HOH A 23 424 24 HOH HOH . D 4 HOH A 24 425 25 HOH HOH . D 4 HOH A 25 426 26 HOH HOH . D 4 HOH A 26 427 27 HOH HOH . D 4 HOH A 27 428 28 HOH HOH . D 4 HOH A 28 429 30 HOH HOH . D 4 HOH A 29 430 31 HOH HOH . D 4 HOH A 30 431 32 HOH HOH . D 4 HOH A 31 432 33 HOH HOH . D 4 HOH A 32 433 34 HOH HOH . D 4 HOH A 33 434 35 HOH HOH . D 4 HOH A 34 435 36 HOH HOH . D 4 HOH A 35 436 37 HOH HOH . D 4 HOH A 36 437 38 HOH HOH . D 4 HOH A 37 438 39 HOH HOH . D 4 HOH A 38 439 40 HOH HOH . D 4 HOH A 39 440 41 HOH HOH . D 4 HOH A 40 441 42 HOH HOH . D 4 HOH A 41 442 43 HOH HOH . D 4 HOH A 42 443 44 HOH HOH . D 4 HOH A 43 444 45 HOH HOH . D 4 HOH A 44 445 46 HOH HOH . D 4 HOH A 45 446 47 HOH HOH . D 4 HOH A 46 447 48 HOH HOH . D 4 HOH A 47 448 49 HOH HOH . D 4 HOH A 48 449 50 HOH HOH . D 4 HOH A 49 450 51 HOH HOH . D 4 HOH A 50 451 52 HOH HOH . D 4 HOH A 51 452 53 HOH HOH . D 4 HOH A 52 453 54 HOH HOH . D 4 HOH A 53 454 55 HOH HOH . D 4 HOH A 54 455 56 HOH HOH . D 4 HOH A 55 456 57 HOH HOH . D 4 HOH A 56 457 58 HOH HOH . D 4 HOH A 57 458 59 HOH HOH . D 4 HOH A 58 459 60 HOH HOH . D 4 HOH A 59 460 61 HOH HOH . D 4 HOH A 60 461 62 HOH HOH . D 4 HOH A 61 462 65 HOH HOH . D 4 HOH A 62 463 66 HOH HOH . D 4 HOH A 63 464 68 HOH HOH . D 4 HOH A 64 465 69 HOH HOH . D 4 HOH A 65 466 70 HOH HOH . D 4 HOH A 66 467 71 HOH HOH . D 4 HOH A 67 468 72 HOH HOH . D 4 HOH A 68 469 73 HOH HOH . D 4 HOH A 69 470 74 HOH HOH . D 4 HOH A 70 471 76 HOH HOH . D 4 HOH A 71 472 77 HOH HOH . D 4 HOH A 72 473 79 HOH HOH . D 4 HOH A 73 474 80 HOH HOH . D 4 HOH A 74 475 81 HOH HOH . D 4 HOH A 75 476 82 HOH HOH . D 4 HOH A 76 477 83 HOH HOH . D 4 HOH A 77 478 84 HOH HOH . D 4 HOH A 78 479 85 HOH HOH . D 4 HOH A 79 480 86 HOH HOH . D 4 HOH A 80 481 87 HOH HOH . D 4 HOH A 81 482 88 HOH HOH . D 4 HOH A 82 483 89 HOH HOH . D 4 HOH A 83 484 90 HOH HOH . D 4 HOH A 84 485 91 HOH HOH . D 4 HOH A 85 486 92 HOH HOH . D 4 HOH A 86 487 94 HOH HOH . D 4 HOH A 87 488 95 HOH HOH . D 4 HOH A 88 489 96 HOH HOH . D 4 HOH A 89 490 97 HOH HOH . D 4 HOH A 90 491 98 HOH HOH . D 4 HOH A 91 492 99 HOH HOH . D 4 HOH A 92 493 100 HOH HOH . D 4 HOH A 93 494 101 HOH HOH . D 4 HOH A 94 495 102 HOH HOH . D 4 HOH A 95 496 104 HOH HOH . D 4 HOH A 96 497 105 HOH HOH . D 4 HOH A 97 498 106 HOH HOH . D 4 HOH A 98 499 108 HOH HOH . D 4 HOH A 99 500 109 HOH HOH . D 4 HOH A 100 501 110 HOH HOH . D 4 HOH A 101 502 112 HOH HOH . D 4 HOH A 102 503 113 HOH HOH . E 4 HOH B 1 22 22 HOH HOH . E 4 HOH B 2 29 29 HOH HOH . E 4 HOH B 3 63 63 HOH HOH . E 4 HOH B 4 67 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 17.58 29.362 28.327 1 49.38 ? N1A COA 401 A 1 HETATM 2 C C2A COA . . . C 3 18.154 30.32 27.488 1 48.8 ? C2A COA 401 A 1 HETATM 3 N N3A COA . . . C 3 17.963 30.437 26.151 1 49.94 ? N3A COA 401 A 1 HETATM 4 C C4A COA . . . C 3 17.139 29.5 25.639 1 49.01 ? C4A COA 401 A 1 HETATM 5 C C5A COA . . . C 3 16.458 28.454 26.347 1 48.67 ? C5A COA 401 A 1 HETATM 6 C C6A COA . . . C 3 16.73 28.387 27.833 1 48.88 ? C6A COA 401 A 1 HETATM 7 N N6A COA . . . C 3 16.202 27.503 28.615 1 47.9 ? N6A COA 401 A 1 HETATM 8 N N7A COA . . . C 3 15.699 27.684 25.512 1 47.98 ? N7A COA 401 A 1 HETATM 9 C C8A COA . . . C 3 15.877 28.245 24.276 1 49.03 ? C8A COA 401 A 1 HETATM 10 N N9A COA . . . C 3 16.738 29.344 24.288 1 49.59 ? N9A COA 401 A 1 HETATM 11 C C1B COA . . . C 3 17.232 30.174 23.098 1 51.32 ? C1B COA 401 A 1 HETATM 12 C C2B COA . . . C 3 18.354 29.472 22.347 1 53.25 ? C2B COA 401 A 1 HETATM 13 O O2B COA . . . C 3 19.585 29.878 22.919 1 55.41 ? O2B COA 401 A 1 HETATM 14 C C3B COA . . . C 3 18.238 29.89 20.851 1 53.67 ? C3B COA 401 A 1 HETATM 15 O O3B COA . . . C 3 19.215 30.766 20.363 1 57.38 ? O3B COA 401 A 1 HETATM 16 P P3B COA . . . C 3 18.71 32.116 19.472 1 60.7 ? P3B COA 401 A 1 HETATM 17 O O7A COA . . . C 3 17.967 31.569 18.158 1 60.24 ? O7A COA 401 A 1 HETATM 18 O O8A COA . . . C 3 19.995 32.928 18.97 1 61.18 ? O8A COA 401 A 1 HETATM 19 O O9A COA . . . C 3 17.746 33.001 20.376 1 59.34 ? O9A COA 401 A 1 HETATM 20 C C4B COA . . . C 3 16.752 30.267 20.717 1 50.68 ? C4B COA 401 A 1 HETATM 21 O O4B COA . . . C 3 16.18 30.38 22.102 1 50.58 ? O4B COA 401 A 1 HETATM 22 C C5B COA . . . C 3 15.965 29.304 19.846 1 46.39 ? C5B COA 401 A 1 HETATM 23 O O5B COA . . . C 3 14.889 28.748 20.639 1 38.77 ? O5B COA 401 A 1 HETATM 24 P P1A COA . . . C 3 14.217 27.373 20.114 1 32.76 ? P1A COA 401 A 1 HETATM 25 O O1A COA . . . C 3 15.23 26.277 20.234 1 32.06 ? O1A COA 401 A 1 HETATM 26 O O2A COA . . . C 3 13.552 27.558 18.777 1 34.28 ? O2A COA 401 A 1 HETATM 27 O O3A COA . . . C 3 13.187 27.181 21.202 1 29.59 ? O3A COA 401 A 1 HETATM 28 P P2A COA . . . C 3 12.897 26.092 22.369 1 24.95 ? P2A COA 401 A 1 HETATM 29 O O4A COA . . . C 3 14.005 25.985 23.369 1 23.37 ? O4A COA 401 A 1 HETATM 30 O O5A COA . . . C 3 12.538 24.705 21.901 1 25.58 ? O5A COA 401 A 1 HETATM 31 O O6A COA . . . C 3 11.564 26.846 22.976 1 26 ? O6A COA 401 A 1 HETATM 32 C CBP COA . . . C 3 10.782 28.386 24.759 1 19.73 ? CBP COA 401 A 1 HETATM 33 C CCP COA . . . C 3 11.632 28.203 23.462 1 22.13 ? CCP COA 401 A 1 HETATM 34 C CDP COA . . . C 3 10.666 29.893 25.193 1 17.26 ? CDP COA 401 A 1 HETATM 35 C CEP COA . . . C 3 9.401 27.826 24.325 1 16.75 ? CEP COA 401 A 1 HETATM 36 C CAP COA . . . C 3 11.537 27.57 25.904 1 18.35 ? CAP COA 401 A 1 HETATM 37 O OAP COA . . . C 3 12.809 28.209 26.222 1 19.18 ? OAP COA 401 A 1 HETATM 38 C C9P COA . . . C 3 10.738 27.406 27.2 1 17.64 ? C9P COA 401 A 1 HETATM 39 O O9P COA . . . C 3 9.884 26.373 27.351 1 19.17 ? O9P COA 401 A 1 HETATM 40 N N8P COA . . . C 3 10.946 28.324 28.113 1 18.76 ? N8P COA 401 A 1 HETATM 41 C C7P COA . . . C 3 10.313 28.352 29.436 1 20.32 ? C7P COA 401 A 1 HETATM 42 C C6P COA . . . C 3 8.845 28.717 29.31 1 19.92 ? C6P COA 401 A 1 HETATM 43 C C5P COA . . . C 3 8.702 30.158 28.916 1 23.27 ? C5P COA 401 A 1 HETATM 44 O O5P COA . . . C 3 9.37 31.107 29.483 1 23.67 ? O5P COA 401 A 1 HETATM 45 N N4P COA . . . C 3 7.834 30.331 27.936 1 22.86 ? N4P COA 401 A 1 HETATM 46 C C3P COA . . . C 3 7.442 31.642 27.265 1 22.2 ? C3P COA 401 A 1 HETATM 47 C C2P COA . . . C 3 6.51 32.393 28.196 1 24.05 ? C2P COA 401 A 1 HETATM 48 S S1P COA . . . C 3 4.992 31.495 28.789 1 26.62 ? S1P COA 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #