data_1PUA # _model_server_result.job_id LPF5lStLxHyozmZA2lfCqA _model_server_result.datetime_utc '2025-09-01 07:47:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1PUA # _exptl.entry_id 1PUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PUA _cell.length_a 64.135 _cell.length_b 64.135 _cell.length_c 96.697 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 5 B LYS 309 1_555 B N SEP 6 B SEP 310 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.34 ? covale ? covale2 B C LYS 5 B LYS 309 1_555 B N SEP 6 B SEP 310 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.318 ? covale ? covale3 B C SEP 6 B SEP 310 1_555 B N THR 7 B THR 311 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C SEP 6 B SEP 310 1_555 B N THR 7 B THR 311 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1PUA _atom_sites.fract_transf_matrix[1][1] 0.015592 _atom_sites.fract_transf_matrix[1][2] 0.009002 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 COA A 1 401 401 COA COA . D 4 HOH A 1 402 1 HOH HOH . D 4 HOH A 2 403 2 HOH HOH . D 4 HOH A 3 404 3 HOH HOH . D 4 HOH A 4 405 4 HOH HOH . D 4 HOH A 5 406 5 HOH HOH . D 4 HOH A 6 407 6 HOH HOH . D 4 HOH A 7 408 7 HOH HOH . D 4 HOH A 8 409 8 HOH HOH . D 4 HOH A 9 410 9 HOH HOH . D 4 HOH A 10 411 10 HOH HOH . D 4 HOH A 11 412 11 HOH HOH . D 4 HOH A 12 413 12 HOH HOH . D 4 HOH A 13 414 13 HOH HOH . D 4 HOH A 14 415 15 HOH HOH . D 4 HOH A 15 416 18 HOH HOH . D 4 HOH A 16 417 19 HOH HOH . D 4 HOH A 17 418 20 HOH HOH . D 4 HOH A 18 419 21 HOH HOH . D 4 HOH A 19 420 22 HOH HOH . D 4 HOH A 20 421 23 HOH HOH . D 4 HOH A 21 422 24 HOH HOH . D 4 HOH A 22 423 25 HOH HOH . D 4 HOH A 23 424 26 HOH HOH . D 4 HOH A 24 425 27 HOH HOH . D 4 HOH A 25 426 28 HOH HOH . D 4 HOH A 26 427 29 HOH HOH . D 4 HOH A 27 428 30 HOH HOH . D 4 HOH A 28 429 31 HOH HOH . D 4 HOH A 29 430 32 HOH HOH . D 4 HOH A 30 431 33 HOH HOH . D 4 HOH A 31 432 34 HOH HOH . D 4 HOH A 32 433 35 HOH HOH . D 4 HOH A 33 434 36 HOH HOH . D 4 HOH A 34 435 37 HOH HOH . D 4 HOH A 35 436 38 HOH HOH . D 4 HOH A 36 437 39 HOH HOH . D 4 HOH A 37 438 40 HOH HOH . D 4 HOH A 38 439 41 HOH HOH . D 4 HOH A 39 440 42 HOH HOH . D 4 HOH A 40 441 43 HOH HOH . D 4 HOH A 41 442 47 HOH HOH . D 4 HOH A 42 443 48 HOH HOH . D 4 HOH A 43 444 49 HOH HOH . D 4 HOH A 44 445 50 HOH HOH . D 4 HOH A 45 446 53 HOH HOH . D 4 HOH A 46 447 54 HOH HOH . D 4 HOH A 47 448 55 HOH HOH . D 4 HOH A 48 449 56 HOH HOH . D 4 HOH A 49 450 57 HOH HOH . D 4 HOH A 50 451 58 HOH HOH . D 4 HOH A 51 452 59 HOH HOH . D 4 HOH A 52 453 60 HOH HOH . D 4 HOH A 53 454 61 HOH HOH . D 4 HOH A 54 455 62 HOH HOH . D 4 HOH A 55 456 63 HOH HOH . D 4 HOH A 56 457 64 HOH HOH . D 4 HOH A 57 458 65 HOH HOH . D 4 HOH A 58 459 67 HOH HOH . D 4 HOH A 59 460 68 HOH HOH . D 4 HOH A 60 461 69 HOH HOH . D 4 HOH A 61 462 70 HOH HOH . D 4 HOH A 62 463 71 HOH HOH . D 4 HOH A 63 464 72 HOH HOH . D 4 HOH A 64 465 73 HOH HOH . D 4 HOH A 65 466 74 HOH HOH . D 4 HOH A 66 467 75 HOH HOH . D 4 HOH A 67 468 76 HOH HOH . D 4 HOH A 68 469 77 HOH HOH . D 4 HOH A 69 470 78 HOH HOH . D 4 HOH A 70 471 79 HOH HOH . D 4 HOH A 71 472 80 HOH HOH . D 4 HOH A 72 473 81 HOH HOH . D 4 HOH A 73 474 82 HOH HOH . D 4 HOH A 74 475 83 HOH HOH . D 4 HOH A 75 476 84 HOH HOH . D 4 HOH A 76 477 85 HOH HOH . D 4 HOH A 77 478 86 HOH HOH . D 4 HOH A 78 479 87 HOH HOH . D 4 HOH A 79 480 88 HOH HOH . D 4 HOH A 80 481 89 HOH HOH . D 4 HOH A 81 482 90 HOH HOH . D 4 HOH A 82 483 91 HOH HOH . D 4 HOH A 83 484 92 HOH HOH . D 4 HOH A 84 485 93 HOH HOH . D 4 HOH A 85 486 94 HOH HOH . D 4 HOH A 86 487 95 HOH HOH . D 4 HOH A 87 488 96 HOH HOH . D 4 HOH A 88 489 98 HOH HOH . D 4 HOH A 89 490 99 HOH HOH . D 4 HOH A 90 491 101 HOH HOH . D 4 HOH A 91 492 102 HOH HOH . D 4 HOH A 92 493 104 HOH HOH . D 4 HOH A 93 494 105 HOH HOH . D 4 HOH A 94 495 106 HOH HOH . D 4 HOH A 95 496 107 HOH HOH . D 4 HOH A 96 497 109 HOH HOH . D 4 HOH A 97 498 110 HOH HOH . D 4 HOH A 98 499 111 HOH HOH . D 4 HOH A 99 500 112 HOH HOH . D 4 HOH A 100 501 113 HOH HOH . D 4 HOH A 101 502 114 HOH HOH . D 4 HOH A 102 503 115 HOH HOH . D 4 HOH A 103 504 116 HOH HOH . D 4 HOH A 104 505 117 HOH HOH . D 4 HOH A 105 506 119 HOH HOH . D 4 HOH A 106 507 120 HOH HOH . D 4 HOH A 107 508 121 HOH HOH . D 4 HOH A 108 509 123 HOH HOH . D 4 HOH A 109 510 124 HOH HOH . D 4 HOH A 110 511 125 HOH HOH . D 4 HOH A 111 512 126 HOH HOH . D 4 HOH A 112 513 130 HOH HOH . D 4 HOH A 113 514 131 HOH HOH . D 4 HOH A 114 515 132 HOH HOH . D 4 HOH A 115 516 133 HOH HOH . D 4 HOH A 116 517 134 HOH HOH . D 4 HOH A 117 518 135 HOH HOH . D 4 HOH A 118 519 136 HOH HOH . D 4 HOH A 119 520 137 HOH HOH . D 4 HOH A 120 521 138 HOH HOH . D 4 HOH A 121 522 139 HOH HOH . D 4 HOH A 122 523 140 HOH HOH . E 4 HOH B 1 14 14 HOH HOH . E 4 HOH B 2 16 16 HOH HOH . E 4 HOH B 3 45 45 HOH HOH . E 4 HOH B 4 51 51 HOH HOH . E 4 HOH B 5 66 66 HOH HOH . E 4 HOH B 6 100 100 HOH HOH . E 4 HOH B 7 103 103 HOH HOH . E 4 HOH B 8 108 108 HOH HOH . E 4 HOH B 9 122 122 HOH HOH . E 4 HOH B 10 127 127 HOH HOH . E 4 HOH B 11 128 128 HOH HOH . E 4 HOH B 12 141 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 47.346 31.116 10.923 1 66.4 ? N1A COA 401 A 1 HETATM 2 C C2A COA . . . C 3 46.841 32.01 9.971 1 68.37 ? C2A COA 401 A 1 HETATM 3 N N3A COA . . . C 3 46.665 31.767 8.647 1 69.21 ? N3A COA 401 A 1 HETATM 4 C C4A COA . . . C 3 47.03 30.519 8.287 1 68.9 ? C4A COA 401 A 1 HETATM 5 C C5A COA . . . C 3 47.568 29.482 9.126 1 67.43 ? C5A COA 401 A 1 HETATM 6 C C6A COA . . . C 3 47.726 29.831 10.573 1 67.44 ? C6A COA 401 A 1 HETATM 7 N N6A COA . . . C 3 48.194 29.001 11.447 1 66.93 ? N6A COA 401 A 1 HETATM 8 N N7A COA . . . C 3 47.827 28.345 8.432 1 66.57 ? N7A COA 401 A 1 HETATM 9 C C8A COA . . . C 3 47.472 28.637 7.157 1 67.34 ? C8A COA 401 A 1 HETATM 10 N N9A COA . . . C 3 46.981 29.938 7.007 1 68.11 ? N9A COA 401 A 1 HETATM 11 C C1B COA . . . C 3 46.455 30.565 5.737 1 69.4 ? C1B COA 401 A 1 HETATM 12 C C2B COA . . . C 3 47.564 31.116 4.85 1 70.81 ? C2B COA 401 A 1 HETATM 13 O O2B COA . . . C 3 47.725 32.481 5.172 1 72.99 ? O2B COA 401 A 1 HETATM 14 C C3B COA . . . C 3 47.098 30.906 3.382 1 71.94 ? C3B COA 401 A 1 HETATM 15 O O3B COA . . . C 3 46.572 32.047 2.75 1 77.85 ? O3B COA 401 A 1 HETATM 16 P P3B COA . . . C 3 45.189 31.834 1.777 1 82.34 ? P3B COA 401 A 1 HETATM 17 O O7A COA . . . C 3 45.606 30.853 0.584 1 79.52 ? O7A COA 401 A 1 HETATM 18 O O8A COA . . . C 3 44.767 33.22 1.102 1 83.41 ? O8A COA 401 A 1 HETATM 19 O O9A COA . . . C 3 44.017 31.228 2.669 1 81.16 ? O9A COA 401 A 1 HETATM 20 C C4B COA . . . C 3 46.2 29.653 3.512 1 68.1 ? C4B COA 401 A 1 HETATM 21 O O4B COA . . . C 3 45.849 29.509 4.946 1 70.39 ? O4B COA 401 A 1 HETATM 22 C C5B COA . . . C 3 46.85 28.378 3.033 1 59.93 ? C5B COA 401 A 1 HETATM 23 O O5B COA . . . C 3 46.636 27.324 4.029 1 44.38 ? O5B COA 401 A 1 HETATM 24 P P1A COA . . . C 3 47.379 25.916 3.72 1 35.15 ? P1A COA 401 A 1 HETATM 25 O O1A COA . . . C 3 48.851 26.159 3.846 1 33.36 ? O1A COA 401 A 1 HETATM 26 O O2A COA . . . C 3 46.881 25.341 2.418 1 39.26 ? O2A COA 401 A 1 HETATM 27 O O3A COA . . . C 3 46.983 25.025 4.886 1 30.35 ? O3A COA 401 A 1 HETATM 28 P P2A COA . . . C 3 47.792 24.393 6.163 1 27.78 ? P2A COA 401 A 1 HETATM 29 O O4A COA . . . C 3 48.359 25.448 7.075 1 28.3 ? O4A COA 401 A 1 HETATM 30 O O5A COA . . . C 3 48.879 23.409 5.808 1 28.71 ? O5A COA 401 A 1 HETATM 31 O O6A COA . . . C 3 46.535 23.581 6.833 1 28.54 ? O6A COA 401 A 1 HETATM 32 C CBP COA . . . C 3 44.858 23.558 8.596 1 23.03 ? CBP COA 401 A 1 HETATM 33 C CCP COA . . . C 3 45.341 24.237 7.279 1 23.6 ? CCP COA 401 A 1 HETATM 34 C CDP COA . . . C 3 43.487 24.125 9.103 1 15.92 ? CDP COA 401 A 1 HETATM 35 C CEP COA . . . C 3 44.712 22.083 8.153 1 21.99 ? CEP COA 401 A 1 HETATM 36 C CAP COA . . . C 3 45.989 23.831 9.698 1 20.08 ? CAP COA 401 A 1 HETATM 37 O OAP COA . . . C 3 46.033 25.241 10.05 1 23.38 ? OAP COA 401 A 1 HETATM 38 C C9P COA . . . C 3 45.802 23.034 10.986 1 21.6 ? C9P COA 401 A 1 HETATM 39 O O9P COA . . . C 3 46.343 21.803 11.122 1 20.23 ? O9P COA 401 A 1 HETATM 40 N N8P COA . . . C 3 45.097 23.633 11.917 1 23.37 ? N8P COA 401 A 1 HETATM 41 C C7P COA . . . C 3 44.804 23.065 13.23 1 22.35 ? C7P COA 401 A 1 HETATM 42 C C6P COA . . . C 3 43.753 21.98 13.064 1 24.02 ? C6P COA 401 A 1 HETATM 43 C C5P COA . . . C 3 42.423 22.583 12.725 1 24.14 ? C5P COA 401 A 1 HETATM 44 O O5P COA . . . C 3 41.976 23.635 13.307 1 24.76 ? O5P COA 401 A 1 HETATM 45 N N4P COA . . . C 3 41.777 21.924 11.789 1 22.94 ? N4P COA 401 A 1 HETATM 46 C C3P COA . . . C 3 40.403 22.275 11.22 1 26.58 ? C3P COA 401 A 1 HETATM 47 C C2P COA . . . C 3 39.383 21.783 12.235 1 29.46 ? C2P COA 401 A 1 HETATM 48 S S1P COA . . . C 3 39.537 19.987 12.629 1 35.95 ? S1P COA 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #