data_1PVF # _model_server_result.job_id kbUJaa0M50BETw0X5K69xg _model_server_result.datetime_utc '2025-02-27 06:10:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1PVF # _exptl.entry_id 1PVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PVF _cell.length_a 69.09 _cell.length_b 71.88 _cell.length_c 91.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A NE2 HIS 32 A HIS 32 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A O CYS 67 A CYS 67 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 A NE2 HIS 69 A HIS 69 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 A OE2 GLU 87 A GLU 87 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 A OE1 GLU 114 A GLU 114 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A OE2 GLU 114 A GLU 114 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc8 A OE2 GLU 116 A GLU 116 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc9 E O6 DPO . A DPO 301 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc10 E O2 DPO . A DPO 301 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc11 D MG MG . A MG 401 1_555 I O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc12 D MG MG . A MG 401 1_555 I O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc13 B NE2 HIS 25 B HIS 25 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc14 B NE2 HIS 32 B HIS 32 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc15 B O CYS 67 B CYS 67 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc16 B NE2 HIS 69 B HIS 69 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc17 B OE2 GLU 87 B GLU 87 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc18 B OE1 GLU 114 B GLU 114 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc19 B OE2 GLU 114 B GLU 114 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc20 B OE2 GLU 116 B GLU 116 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc21 H O6 DPO . B DPO 301 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc22 H O2 DPO . B DPO 301 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc23 G MG MG . B MG 401 1_555 J O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc24 G MG MG . B MG 401 1_555 J O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PVF _atom_sites.fract_transf_matrix[1][1] 0.014474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 201 MN MN . D 3 MG A 1 401 401 MG MG . E 4 DPO A 1 301 301 DPO DPO . F 2 MN B 1 201 201 MN MN . G 3 MG B 1 401 401 MG MG . H 4 DPO B 1 301 301 DPO DPO . I 5 HOH A 1 501 501 HOH HOH . I 5 HOH A 2 502 502 HOH HOH . I 5 HOH A 3 503 503 HOH HOH . I 5 HOH A 4 504 504 HOH HOH . I 5 HOH A 5 505 505 HOH HOH . I 5 HOH A 6 506 506 HOH HOH . I 5 HOH A 7 515 515 HOH HOH . I 5 HOH A 8 517 517 HOH HOH . I 5 HOH A 9 518 518 HOH HOH . I 5 HOH A 10 519 519 HOH HOH . I 5 HOH A 11 525 525 HOH HOH . I 5 HOH A 12 526 526 HOH HOH . I 5 HOH A 13 529 529 HOH HOH . I 5 HOH A 14 531 531 HOH HOH . I 5 HOH A 15 532 532 HOH HOH . I 5 HOH A 16 534 534 HOH HOH . I 5 HOH A 17 538 538 HOH HOH . I 5 HOH A 18 540 540 HOH HOH . I 5 HOH A 19 541 541 HOH HOH . I 5 HOH A 20 542 542 HOH HOH . I 5 HOH A 21 543 543 HOH HOH . I 5 HOH A 22 548 548 HOH HOH . I 5 HOH A 23 549 549 HOH HOH . I 5 HOH A 24 550 550 HOH HOH . I 5 HOH A 25 552 552 HOH HOH . I 5 HOH A 26 553 553 HOH HOH . I 5 HOH A 27 555 555 HOH HOH . I 5 HOH A 28 557 557 HOH HOH . I 5 HOH A 29 558 558 HOH HOH . I 5 HOH A 30 559 559 HOH HOH . I 5 HOH A 31 560 560 HOH HOH . I 5 HOH A 32 561 561 HOH HOH . I 5 HOH A 33 562 562 HOH HOH . I 5 HOH A 34 563 563 HOH HOH . I 5 HOH A 35 567 567 HOH HOH . I 5 HOH A 36 569 569 HOH HOH . I 5 HOH A 37 571 571 HOH HOH . I 5 HOH A 38 572 572 HOH HOH . I 5 HOH A 39 573 573 HOH HOH . I 5 HOH A 40 574 574 HOH HOH . I 5 HOH A 41 576 576 HOH HOH . I 5 HOH A 42 579 579 HOH HOH . I 5 HOH A 43 581 581 HOH HOH . I 5 HOH A 44 582 582 HOH HOH . I 5 HOH A 45 583 583 HOH HOH . I 5 HOH A 46 585 585 HOH HOH . I 5 HOH A 47 587 587 HOH HOH . I 5 HOH A 48 590 590 HOH HOH . I 5 HOH A 49 591 591 HOH HOH . I 5 HOH A 50 593 593 HOH HOH . I 5 HOH A 51 595 595 HOH HOH . I 5 HOH A 52 596 596 HOH HOH . I 5 HOH A 53 599 599 HOH HOH . I 5 HOH A 54 600 600 HOH HOH . I 5 HOH A 55 601 601 HOH HOH . I 5 HOH A 56 603 603 HOH HOH . I 5 HOH A 57 604 604 HOH HOH . I 5 HOH A 58 605 605 HOH HOH . I 5 HOH A 59 610 610 HOH HOH . I 5 HOH A 60 611 611 HOH HOH . I 5 HOH A 61 613 613 HOH HOH . I 5 HOH A 62 615 615 HOH HOH . I 5 HOH A 63 616 616 HOH HOH . I 5 HOH A 64 618 618 HOH HOH . I 5 HOH A 65 621 621 HOH HOH . I 5 HOH A 66 622 622 HOH HOH . I 5 HOH A 67 623 623 HOH HOH . I 5 HOH A 68 626 626 HOH HOH . I 5 HOH A 69 628 628 HOH HOH . I 5 HOH A 70 634 634 HOH HOH . I 5 HOH A 71 636 636 HOH HOH . I 5 HOH A 72 637 637 HOH HOH . I 5 HOH A 73 639 639 HOH HOH . I 5 HOH A 74 644 644 HOH HOH . I 5 HOH A 75 646 646 HOH HOH . I 5 HOH A 76 648 648 HOH HOH . I 5 HOH A 77 649 649 HOH HOH . I 5 HOH A 78 650 650 HOH HOH . I 5 HOH A 79 651 651 HOH HOH . I 5 HOH A 80 652 652 HOH HOH . I 5 HOH A 81 655 655 HOH HOH . I 5 HOH A 82 656 656 HOH HOH . I 5 HOH A 83 658 658 HOH HOH . I 5 HOH A 84 660 660 HOH HOH . I 5 HOH A 85 661 661 HOH HOH . I 5 HOH A 86 664 664 HOH HOH . I 5 HOH A 87 665 665 HOH HOH . I 5 HOH A 88 667 667 HOH HOH . I 5 HOH A 89 668 668 HOH HOH . I 5 HOH A 90 670 670 HOH HOH . I 5 HOH A 91 671 671 HOH HOH . I 5 HOH A 92 672 672 HOH HOH . I 5 HOH A 93 673 673 HOH HOH . I 5 HOH A 94 674 674 HOH HOH . I 5 HOH A 95 676 676 HOH HOH . I 5 HOH A 96 677 677 HOH HOH . I 5 HOH A 97 678 678 HOH HOH . I 5 HOH A 98 679 679 HOH HOH . I 5 HOH A 99 680 680 HOH HOH . I 5 HOH A 100 683 683 HOH HOH . I 5 HOH A 101 688 688 HOH HOH . I 5 HOH A 102 693 693 HOH HOH . I 5 HOH A 103 1502 1502 HOH HOH . I 5 HOH A 104 1503 1503 HOH HOH . I 5 HOH A 105 1506 1506 HOH HOH . I 5 HOH A 106 1507 1507 HOH HOH . I 5 HOH A 107 1511 1511 HOH HOH . I 5 HOH A 108 1512 1512 HOH HOH . J 5 HOH B 1 507 507 HOH HOH . J 5 HOH B 2 508 508 HOH HOH . J 5 HOH B 3 509 509 HOH HOH . J 5 HOH B 4 510 510 HOH HOH . J 5 HOH B 5 511 511 HOH HOH . J 5 HOH B 6 512 512 HOH HOH . J 5 HOH B 7 513 513 HOH HOH . J 5 HOH B 8 514 514 HOH HOH . J 5 HOH B 9 516 516 HOH HOH . J 5 HOH B 10 520 520 HOH HOH . J 5 HOH B 11 521 521 HOH HOH . J 5 HOH B 12 522 522 HOH HOH . J 5 HOH B 13 523 523 HOH HOH . J 5 HOH B 14 524 524 HOH HOH . J 5 HOH B 15 527 527 HOH HOH . J 5 HOH B 16 528 528 HOH HOH . J 5 HOH B 17 530 530 HOH HOH . J 5 HOH B 18 533 533 HOH HOH . J 5 HOH B 19 535 535 HOH HOH . J 5 HOH B 20 536 536 HOH HOH . J 5 HOH B 21 537 537 HOH HOH . J 5 HOH B 22 539 539 HOH HOH . J 5 HOH B 23 544 544 HOH HOH . J 5 HOH B 24 545 545 HOH HOH . J 5 HOH B 25 546 546 HOH HOH . J 5 HOH B 26 547 547 HOH HOH . J 5 HOH B 27 551 551 HOH HOH . J 5 HOH B 28 554 554 HOH HOH . J 5 HOH B 29 556 556 HOH HOH . J 5 HOH B 30 564 564 HOH HOH . J 5 HOH B 31 565 565 HOH HOH . J 5 HOH B 32 566 566 HOH HOH . J 5 HOH B 33 568 568 HOH HOH . J 5 HOH B 34 570 570 HOH HOH . J 5 HOH B 35 575 575 HOH HOH . J 5 HOH B 36 577 577 HOH HOH . J 5 HOH B 37 578 578 HOH HOH . J 5 HOH B 38 580 580 HOH HOH . J 5 HOH B 39 584 584 HOH HOH . J 5 HOH B 40 586 586 HOH HOH . J 5 HOH B 41 588 588 HOH HOH . J 5 HOH B 42 589 589 HOH HOH . J 5 HOH B 43 592 592 HOH HOH . J 5 HOH B 44 594 594 HOH HOH . J 5 HOH B 45 597 597 HOH HOH . J 5 HOH B 46 598 598 HOH HOH . J 5 HOH B 47 602 602 HOH HOH . J 5 HOH B 48 606 606 HOH HOH . J 5 HOH B 49 607 607 HOH HOH . J 5 HOH B 50 608 608 HOH HOH . J 5 HOH B 51 609 609 HOH HOH . J 5 HOH B 52 612 612 HOH HOH . J 5 HOH B 53 614 614 HOH HOH . J 5 HOH B 54 617 617 HOH HOH . J 5 HOH B 55 619 619 HOH HOH . J 5 HOH B 56 624 624 HOH HOH . J 5 HOH B 57 625 625 HOH HOH . J 5 HOH B 58 627 627 HOH HOH . J 5 HOH B 59 629 629 HOH HOH . J 5 HOH B 60 630 630 HOH HOH . J 5 HOH B 61 631 631 HOH HOH . J 5 HOH B 62 632 632 HOH HOH . J 5 HOH B 63 633 633 HOH HOH . J 5 HOH B 64 635 635 HOH HOH . J 5 HOH B 65 640 640 HOH HOH . J 5 HOH B 66 641 641 HOH HOH . J 5 HOH B 67 642 642 HOH HOH . J 5 HOH B 68 643 643 HOH HOH . J 5 HOH B 69 645 645 HOH HOH . J 5 HOH B 70 647 647 HOH HOH . J 5 HOH B 71 653 653 HOH HOH . J 5 HOH B 72 654 654 HOH HOH . J 5 HOH B 73 657 657 HOH HOH . J 5 HOH B 74 659 659 HOH HOH . J 5 HOH B 75 662 662 HOH HOH . J 5 HOH B 76 663 663 HOH HOH . J 5 HOH B 77 666 666 HOH HOH . J 5 HOH B 78 669 669 HOH HOH . J 5 HOH B 79 675 675 HOH HOH . J 5 HOH B 80 681 681 HOH HOH . J 5 HOH B 81 682 682 HOH HOH . J 5 HOH B 82 684 684 HOH HOH . J 5 HOH B 83 685 685 HOH HOH . J 5 HOH B 84 686 686 HOH HOH . J 5 HOH B 85 687 687 HOH HOH . J 5 HOH B 86 690 690 HOH HOH . J 5 HOH B 87 1504 1504 HOH HOH . J 5 HOH B 88 1505 1505 HOH HOH . J 5 HOH B 89 1508 1508 HOH HOH . J 5 HOH B 90 1509 1509 HOH HOH . J 5 HOH B 91 1510 1510 HOH HOH . J 5 HOH B 92 1513 1513 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.27 _atom_site.Cartn_y 8.534 _atom_site.Cartn_z 9.075 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #