data_1PVO
#
_model_server_result.job_id            FJwfNBmYIsBhKA8Wa5xPgQ 
_model_server_result.datetime_utc      '2024-11-26 07:25:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":604}' 
#
_entry.id    1PVO 
#
_exptl.entry_id    1PVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.54 
_cell.angle_gamma         90 
_cell.entry_id            1PVO 
_cell.length_a            119.249 
_cell.length_b            204.649 
_cell.length_c            147.788 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     1PVO 
_atom_sites.fract_transf_matrix[1][1]    0.008386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000961 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006811 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 3 ANP A 1 601 600 ANP ANP . 
M 3 ANP B 1 602 600 ANP ANP . 
N 3 ANP C 1 603 600 ANP ANP . 
O 3 ANP D 1 604 600 ANP ANP . 
P 3 ANP E 1 605 600 ANP ANP . 
Q 3 ANP F 1 606 600 ANP ANP . 
R 4 HOH A 1 602 13 HOH HOH . 
S 4 HOH C 1 604 2 HOH HOH . 
S 4 HOH C 2 605 3 HOH HOH . 
S 4 HOH C 3 606 4 HOH HOH . 
S 4 HOH C 4 607 7 HOH HOH . 
S 4 HOH C 5 608 10 HOH HOH . 
T 4 HOH D 1 605 5 HOH HOH . 
T 4 HOH D 2 606 6 HOH HOH . 
T 4 HOH D 3 607 8 HOH HOH . 
T 4 HOH D 4 608 15 HOH HOH . 
U 4 HOH E 1 606 9 HOH HOH . 
U 4 HOH E 2 607 12 HOH HOH . 
V 4 HOH F 1 607 11 HOH HOH . 
V 4 HOH F 2 608 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . O 3 -0.511 25.788 47.176 1 150 ? PG ANP 604 D 1 
HETATM 2 O O1G ANP . . . O 3 0.797 25.055 46.986 1 150 ? O1G ANP 604 D 1 
HETATM 3 O O2G ANP . . . O 3 -0.758 26.827 46.119 1 150 ? O2G ANP 604 D 1 
HETATM 4 O O3G ANP . . . O 3 -1.66 24.854 47.426 1 150 ? O3G ANP 604 D 1 
HETATM 5 P PB ANP . . . O 3 0.563 28.052 48.661 1 150 ? PB ANP 604 D 1 
HETATM 6 O O1B ANP . . . O 3 2.026 27.708 48.658 1 150 ? O1B ANP 604 D 1 
HETATM 7 O O2B ANP . . . O 3 0.035 28.995 47.614 1 150 ? O2B ANP 604 D 1 
HETATM 8 N N3B ANP . . . O 3 -0.305 26.632 48.591 1 150 ? N3B ANP 604 D 1 
HETATM 9 P PA ANP . . . O 3 -0.441 30.161 50.167 1 150 ? PA ANP 604 D 1 
HETATM 10 O O1A ANP . . . O 3 0.523 31.195 49.639 1 150 ? O1A ANP 604 D 1 
HETATM 11 O O2A ANP . . . O 3 -1.829 30.051 49.588 1 150 ? O2A ANP 604 D 1 
HETATM 12 O O3A ANP . . . O 3 0.259 28.722 50.081 1 150 ? O3A ANP 604 D 1 
HETATM 13 O O5' ANP . . . O 3 -0.559 30.36 51.755 1 150 ? O5' ANP 604 D 1 
HETATM 14 C C5' ANP . . . O 3 -1.639 29.847 52.533 1 150 ? C5' ANP 604 D 1 
HETATM 15 C C4' ANP . . . O 3 -1.571 30.609 53.821 1 150 ? C4' ANP 604 D 1 
HETATM 16 O O4' ANP . . . O 3 -0.346 30.678 54.584 1 150 ? O4' ANP 604 D 1 
HETATM 17 C C3' ANP . . . O 3 -2.319 31.669 54.072 1 150 ? C3' ANP 604 D 1 
HETATM 18 O O3' ANP . . . O 3 -3.54 31.658 54.1 1 150 ? O3' ANP 604 D 1 
HETATM 19 C C2' ANP . . . O 3 -1.565 32.584 54.669 1 150 ? C2' ANP 604 D 1 
HETATM 20 O O2' ANP . . . O 3 -2.008 33.535 55.283 1 150 ? O2' ANP 604 D 1 
HETATM 21 C C1' ANP . . . O 3 -0.343 32.104 54.836 1 150 ? C1' ANP 604 D 1 
HETATM 22 N N9 ANP . . . O 3 0.788 32.855 54.733 1 150 ? N9 ANP 604 D 1 
HETATM 23 C C8 ANP . . . O 3 1.763 32.528 53.886 1 150 ? C8 ANP 604 D 1 
HETATM 24 N N7 ANP . . . O 3 2.728 33.479 54.01 1 150 ? N7 ANP 604 D 1 
HETATM 25 C C5 ANP . . . O 3 2.331 34.381 54.923 1 150 ? C5 ANP 604 D 1 
HETATM 26 C C6 ANP . . . O 3 2.895 35.617 55.499 1 150 ? C6 ANP 604 D 1 
HETATM 27 N N6 ANP . . . O 3 4.106 36.074 55.109 1 150 ? N6 ANP 604 D 1 
HETATM 28 N N1 ANP . . . O 3 2.172 36.264 56.422 1 150 ? N1 ANP 604 D 1 
HETATM 29 C C2 ANP . . . O 3 0.96 35.816 56.819 1 150 ? C2 ANP 604 D 1 
HETATM 30 N N3 ANP . . . O 3 0.384 34.696 56.334 1 150 ? N3 ANP 604 D 1 
HETATM 31 C C4 ANP . . . O 3 1.011 33.965 55.411 1 150 ? C4 ANP 604 D 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#