data_1PW5
#
_model_server_result.job_id            YnHBRGnexrKHR8TLD38aPA 
_model_server_result.datetime_utc      '2024-10-20 00:42:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":254}' 
#
_entry.id    1PW5 
#
_exptl.entry_id    1PW5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PW5 
_cell.length_a            97.788 
_cell.length_b            97.788 
_cell.length_c            159.27 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PW5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C ASP 11 A ASP 11 1_555 A N MSE 12 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 A C MSE 12 A MSE 12 1_555 A N ASP 13 A ASP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C ASN 60 A ASN 60 1_555 A N MSE 61 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C MSE 61 A MSE 61 1_555 A N GLY 62 A GLY 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C HIS 80 A HIS 80 1_555 A N MSE 81 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C MSE 81 A MSE 81 1_555 A N LEU 82 A LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 A C ILE 165 A ILE 165 1_555 A N MSE 166 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale9 A C MSE 166 A MSE 166 1_555 A N ALA 167 A ALA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale10 A C ARG 202 A ARG 202 1_555 A N MSE 203 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 A C MSE 203 A MSE 203 1_555 A N ALA 204 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 A C ALA 204 A ALA 204 1_555 A N MSE 205 A MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale13 A C MSE 205 A MSE 205 1_555 A N VAL 206 A VAL 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 256 n n 
C1 O5 NDG sing 257 n n 
C1 O1 NDG sing 258 n n 
C1 H1 NDG sing 259 n n 
C2 C3 NDG sing 260 n n 
C2 N2 NDG sing 261 n n 
C2 H2 NDG sing 262 n n 
C3 C4 NDG sing 263 n n 
C3 O3 NDG sing 264 n n 
C3 H3 NDG sing 265 n n 
C4 C5 NDG sing 266 n n 
C4 O4 NDG sing 267 n n 
C4 H4 NDG sing 268 n n 
C5 C6 NDG sing 269 n n 
C5 O5 NDG sing 270 n n 
C5 H5 NDG sing 271 n n 
C6 O6 NDG sing 272 n n 
C6 H61 NDG sing 273 n n 
C6 H62 NDG sing 274 n n 
C7 C8 NDG sing 275 n n 
C7 O7 NDG doub 276 n n 
C7 N2 NDG sing 277 n n 
C8 H81 NDG sing 278 n n 
C8 H82 NDG sing 279 n n 
C8 H83 NDG sing 280 n n 
O3 HO3 NDG sing 281 n n 
O4 HO4 NDG sing 282 n n 
O6 HO6 NDG sing 283 n n 
N2 HN2 NDG sing 284 n n 
O1 HO1 NDG sing 285 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1PW5 
_atom_sites.fract_transf_matrix[1][1]    0.010226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010226 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006279 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDG A 1 254 200 NDG NAG . 
C 3 SO4 A 1 301 301 SO4 SO4 . 
D 3 SO4 A 1 302 302 SO4 SO4 . 
E 4 HOH A 1 303 1 HOH HOH . 
E 4 HOH A 2 304 2 HOH HOH . 
E 4 HOH A 3 305 3 HOH HOH . 
E 4 HOH A 4 306 4 HOH HOH . 
E 4 HOH A 5 307 5 HOH HOH . 
E 4 HOH A 6 308 6 HOH HOH . 
E 4 HOH A 7 309 7 HOH HOH . 
E 4 HOH A 8 310 8 HOH HOH . 
E 4 HOH A 9 311 9 HOH HOH . 
E 4 HOH A 10 312 10 HOH HOH . 
E 4 HOH A 11 313 11 HOH HOH . 
E 4 HOH A 12 314 12 HOH HOH . 
E 4 HOH A 13 315 13 HOH HOH . 
E 4 HOH A 14 316 14 HOH HOH . 
E 4 HOH A 15 317 15 HOH HOH . 
E 4 HOH A 16 318 16 HOH HOH . 
E 4 HOH A 17 319 17 HOH HOH . 
E 4 HOH A 18 320 18 HOH HOH . 
E 4 HOH A 19 321 19 HOH HOH . 
E 4 HOH A 20 322 20 HOH HOH . 
E 4 HOH A 21 323 21 HOH HOH . 
E 4 HOH A 22 324 22 HOH HOH . 
E 4 HOH A 23 325 23 HOH HOH . 
E 4 HOH A 24 326 24 HOH HOH . 
E 4 HOH A 25 327 25 HOH HOH . 
E 4 HOH A 26 328 26 HOH HOH . 
E 4 HOH A 27 329 27 HOH HOH . 
E 4 HOH A 28 330 28 HOH HOH . 
E 4 HOH A 29 331 29 HOH HOH . 
E 4 HOH A 30 332 30 HOH HOH . 
E 4 HOH A 31 333 31 HOH HOH . 
E 4 HOH A 32 334 32 HOH HOH . 
E 4 HOH A 33 335 33 HOH HOH . 
E 4 HOH A 34 336 34 HOH HOH . 
E 4 HOH A 35 337 35 HOH HOH . 
E 4 HOH A 36 338 36 HOH HOH . 
E 4 HOH A 37 339 37 HOH HOH . 
E 4 HOH A 38 340 38 HOH HOH . 
E 4 HOH A 39 341 39 HOH HOH . 
E 4 HOH A 40 342 40 HOH HOH . 
E 4 HOH A 41 343 41 HOH HOH . 
E 4 HOH A 42 344 42 HOH HOH . 
E 4 HOH A 43 345 43 HOH HOH . 
E 4 HOH A 44 346 44 HOH HOH . 
E 4 HOH A 45 347 45 HOH HOH . 
E 4 HOH A 46 348 46 HOH HOH . 
E 4 HOH A 47 349 47 HOH HOH . 
E 4 HOH A 48 350 48 HOH HOH . 
E 4 HOH A 49 351 49 HOH HOH . 
E 4 HOH A 50 352 50 HOH HOH . 
E 4 HOH A 51 353 51 HOH HOH . 
E 4 HOH A 52 354 52 HOH HOH . 
E 4 HOH A 53 355 53 HOH HOH . 
E 4 HOH A 54 356 54 HOH HOH . 
E 4 HOH A 55 357 55 HOH HOH . 
E 4 HOH A 56 358 56 HOH HOH . 
E 4 HOH A 57 359 57 HOH HOH . 
E 4 HOH A 58 360 58 HOH HOH . 
E 4 HOH A 59 361 59 HOH HOH . 
E 4 HOH A 60 362 60 HOH HOH . 
E 4 HOH A 61 363 61 HOH HOH . 
E 4 HOH A 62 364 62 HOH HOH . 
E 4 HOH A 63 365 63 HOH HOH . 
E 4 HOH A 64 366 64 HOH HOH . 
E 4 HOH A 65 367 65 HOH HOH . 
E 4 HOH A 66 368 66 HOH HOH . 
E 4 HOH A 67 369 67 HOH HOH . 
E 4 HOH A 68 370 68 HOH HOH . 
E 4 HOH A 69 371 69 HOH HOH . 
E 4 HOH A 70 372 70 HOH HOH . 
E 4 HOH A 71 373 71 HOH HOH . 
E 4 HOH A 72 374 72 HOH HOH . 
E 4 HOH A 73 375 73 HOH HOH . 
E 4 HOH A 74 376 74 HOH HOH . 
E 4 HOH A 75 377 75 HOH HOH . 
E 4 HOH A 76 378 76 HOH HOH . 
E 4 HOH A 77 379 77 HOH HOH . 
E 4 HOH A 78 380 78 HOH HOH . 
E 4 HOH A 79 381 79 HOH HOH . 
E 4 HOH A 80 382 80 HOH HOH . 
E 4 HOH A 81 383 81 HOH HOH . 
E 4 HOH A 82 384 82 HOH HOH . 
E 4 HOH A 83 385 83 HOH HOH . 
E 4 HOH A 84 386 84 HOH HOH . 
E 4 HOH A 85 387 85 HOH HOH . 
E 4 HOH A 86 388 86 HOH HOH . 
E 4 HOH A 87 389 87 HOH HOH . 
E 4 HOH A 88 390 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . B 2 23.376 10.219 106.079 1 105.56 ? C1 NDG 254 A 1 
HETATM 2 C C2 NDG . . . B 2 22.06 10.552 105.351 1 105.89 ? C2 NDG 254 A 1 
HETATM 3 C C3 NDG . . . B 2 22.096 12.026 104.931 1 103.99 ? C3 NDG 254 A 1 
HETATM 4 C C4 NDG . . . B 2 22.24 12.879 106.197 1 103.3 ? C4 NDG 254 A 1 
HETATM 5 C C5 NDG . . . B 2 23.557 12.497 106.905 1 101.89 ? C5 NDG 254 A 1 
HETATM 6 C C6 NDG . . . B 2 23.868 13.272 108.175 1 97.63 ? C6 NDG 254 A 1 
HETATM 7 C C7 NDG . . . B 2 21.448 8.407 104.365 1 107.69 ? C7 NDG 254 A 1 
HETATM 8 C C8 NDG . . . B 2 20.172 8.128 105.158 1 106.81 ? C8 NDG 254 A 1 
HETATM 9 O O5 NDG . . . B 2 23.563 11.082 107.233 1 103.88 ? O5 NDG 254 A 1 
HETATM 10 O O3 NDG . . . B 2 20.916 12.379 104.225 1 101.96 ? O3 NDG 254 A 1 
HETATM 11 O O4 NDG . . . B 2 22.238 14.256 105.856 1 105.46 ? O4 NDG 254 A 1 
HETATM 12 O O6 NDG . . . B 2 25.246 13.602 108.244 1 92.22 ? O6 NDG 254 A 1 
HETATM 13 O O7 NDG . . . B 2 22.065 7.461 103.875 1 106.57 ? O7 NDG 254 A 1 
HETATM 14 N N2 NDG . . . B 2 21.839 9.678 104.204 1 107.52 ? N2 NDG 254 A 1 
HETATM 15 O O1 NDG . . . B 2 24.449 10.392 105.22 1 104.77 ? O1 NDG 254 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#