data_1PWF
#
_model_server_result.job_id            gRbJKFMUfbio1QudlcZ3tQ 
_model_server_result.datetime_utc      '2025-03-06 06:33:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pwf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    1PWF 
#
_exptl.entry_id    1PWF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PWF 
_cell.length_a            24.429 
_cell.length_b            44.522 
_cell.length_c            47.332 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PWF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DA 5 A DA 5 1_555 A P 2MU 6 A 2MU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale2 A O3' 2MU 6 A 2MU 6 1_555 A P FA2 7 A FA2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
covale ? covale3 A O2' FA2 7 A FA2 7 1_555 A P DC 8 A DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale4 B O3' DA 5 B DA 115 1_555 B P 2MU 6 B 2MU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? 
covale ? covale5 B O3' 2MU 6 B 2MU 116 1_555 B P FA2 7 B FA2 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? 
covale ? covale6 B O2' FA2 7 B FA2 117 1_555 B P DC 8 B DC 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.64 ? 
hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 10 B DC 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 10 B DC 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 10 B DC 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 DT 4 A DT 4 1_555 B N1 FA2 7 B FA2 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O4 DT 4 A DT 4 1_555 B N6 FA2 7 B FA2 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 DA 5 A DA 5 1_555 B N3 2MU 6 B 2MU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N6 DA 5 A DA 5 1_555 B O4 2MU 6 B 2MU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N3 2MU 6 A 2MU 6 1_555 B N1 DA 5 B DA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O4 2MU 6 A 2MU 6 1_555 B N6 DA 5 B DA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 FA2 7 A FA2 7 1_555 B N3 DT 4 B DT 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N6 FA2 7 A FA2 7 1_555 B O4 DT 4 B DT 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 DC 8 A DC 8 1_555 B N1 DG 3 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N4 DC 8 A DC 8 1_555 B O6 DG 3 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O2 DC 8 A DC 8 1_555 B N2 DG 3 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 DC 10 A DC 10 1_555 B N1 DG 1 B DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N4 DC 10 A DC 10 1_555 B O6 DG 1 B DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O2 DC 10 A DC 10 1_555 B N2 DG 1 B DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 228 n n 
N1 HN11 SPM sing 229 n n 
N1 HN12 SPM sing 230 n n 
C2 C3 SPM sing 231 n n 
C2 H21 SPM sing 232 n n 
C2 H22 SPM sing 233 n n 
C3 C4 SPM sing 234 n n 
C3 H31 SPM sing 235 n n 
C3 H32 SPM sing 236 n n 
C4 N5 SPM sing 237 n n 
C4 H41 SPM sing 238 n n 
C4 H42 SPM sing 239 n n 
N5 C6 SPM sing 240 n n 
N5 HN5 SPM sing 241 n n 
C6 C7 SPM sing 242 n n 
C6 H61 SPM sing 243 n n 
C6 H62 SPM sing 244 n n 
C7 C8 SPM sing 245 n n 
C7 H71 SPM sing 246 n n 
C7 H72 SPM sing 247 n n 
C8 C9 SPM sing 248 n n 
C8 H81 SPM sing 249 n n 
C8 H82 SPM sing 250 n n 
C9 N10 SPM sing 251 n n 
C9 H91 SPM sing 252 n n 
C9 H92 SPM sing 253 n n 
N10 C11 SPM sing 254 n n 
N10 HN0 SPM sing 255 n n 
C11 C12 SPM sing 256 n n 
C11 H111 SPM sing 257 n n 
C11 H112 SPM sing 258 n n 
C12 C13 SPM sing 259 n n 
C12 H121 SPM sing 260 n n 
C12 H122 SPM sing 261 n n 
C13 N14 SPM sing 262 n n 
C13 H131 SPM sing 263 n n 
C13 H132 SPM sing 264 n n 
N14 HN41 SPM sing 265 n n 
N14 HN42 SPM sing 266 n n 
#
_atom_sites.entry_id                     1PWF 
_atom_sites.fract_transf_matrix[1][1]    0.040935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SPM B 1 201 201 SPM SPM . 
D 3 HOH A 1 501 501 HOH HOH . 
D 3 HOH A 2 504 504 HOH HOH . 
D 3 HOH A 3 506 506 HOH HOH . 
D 3 HOH A 4 509 509 HOH HOH . 
D 3 HOH A 5 512 512 HOH HOH . 
D 3 HOH A 6 513 513 HOH HOH . 
D 3 HOH A 7 516 516 HOH HOH . 
D 3 HOH A 8 517 517 HOH HOH . 
D 3 HOH A 9 520 520 HOH HOH . 
D 3 HOH A 10 521 521 HOH HOH . 
D 3 HOH A 11 522 522 HOH HOH . 
D 3 HOH A 12 526 526 HOH HOH . 
D 3 HOH A 13 529 529 HOH HOH . 
D 3 HOH A 14 531 531 HOH HOH . 
D 3 HOH A 15 532 532 HOH HOH . 
D 3 HOH A 16 535 535 HOH HOH . 
D 3 HOH A 17 536 536 HOH HOH . 
D 3 HOH A 18 539 539 HOH HOH . 
D 3 HOH A 19 541 541 HOH HOH . 
D 3 HOH A 20 542 542 HOH HOH . 
D 3 HOH A 21 543 543 HOH HOH . 
D 3 HOH A 22 544 544 HOH HOH . 
D 3 HOH A 23 547 547 HOH HOH . 
D 3 HOH A 24 548 548 HOH HOH . 
D 3 HOH A 25 549 549 HOH HOH . 
D 3 HOH A 26 552 552 HOH HOH . 
D 3 HOH A 27 553 553 HOH HOH . 
D 3 HOH A 28 555 555 HOH HOH . 
D 3 HOH A 29 556 556 HOH HOH . 
D 3 HOH A 30 557 557 HOH HOH . 
D 3 HOH A 31 560 560 HOH HOH . 
D 3 HOH A 32 561 561 HOH HOH . 
D 3 HOH A 33 562 562 HOH HOH . 
D 3 HOH A 34 563 563 HOH HOH . 
D 3 HOH A 35 565 565 HOH HOH . 
D 3 HOH A 36 567 567 HOH HOH . 
D 3 HOH A 37 568 568 HOH HOH . 
D 3 HOH A 38 570 570 HOH HOH . 
D 3 HOH A 39 572 572 HOH HOH . 
D 3 HOH A 40 576 576 HOH HOH . 
D 3 HOH A 41 579 579 HOH HOH . 
D 3 HOH A 42 581 581 HOH HOH . 
D 3 HOH A 43 582 582 HOH HOH . 
D 3 HOH A 44 584 584 HOH HOH . 
D 3 HOH A 45 588 588 HOH HOH . 
D 3 HOH A 46 590 590 HOH HOH . 
D 3 HOH A 47 592 592 HOH HOH . 
D 3 HOH A 48 593 593 HOH HOH . 
D 3 HOH A 49 596 596 HOH HOH . 
D 3 HOH A 50 597 597 HOH HOH . 
D 3 HOH A 51 598 598 HOH HOH . 
D 3 HOH A 52 599 599 HOH HOH . 
D 3 HOH A 53 600 600 HOH HOH . 
D 3 HOH A 54 602 602 HOH HOH . 
D 3 HOH A 55 603 603 HOH HOH . 
D 3 HOH A 56 604 604 HOH HOH . 
D 3 HOH A 57 606 606 HOH HOH . 
D 3 HOH A 58 607 607 HOH HOH . 
D 3 HOH A 59 608 608 HOH HOH . 
D 3 HOH A 60 609 609 HOH HOH . 
E 3 HOH B 1 502 502 HOH HOH . 
E 3 HOH B 2 503 503 HOH HOH . 
E 3 HOH B 3 505 505 HOH HOH . 
E 3 HOH B 4 507 507 HOH HOH . 
E 3 HOH B 5 508 508 HOH HOH . 
E 3 HOH B 6 510 510 HOH HOH . 
E 3 HOH B 7 511 511 HOH HOH . 
E 3 HOH B 8 514 514 HOH HOH . 
E 3 HOH B 9 515 515 HOH HOH . 
E 3 HOH B 10 518 518 HOH HOH . 
E 3 HOH B 11 519 519 HOH HOH . 
E 3 HOH B 12 523 523 HOH HOH . 
E 3 HOH B 13 524 524 HOH HOH . 
E 3 HOH B 14 525 525 HOH HOH . 
E 3 HOH B 15 527 527 HOH HOH . 
E 3 HOH B 16 528 528 HOH HOH . 
E 3 HOH B 17 530 530 HOH HOH . 
E 3 HOH B 18 533 533 HOH HOH . 
E 3 HOH B 19 534 534 HOH HOH . 
E 3 HOH B 20 537 537 HOH HOH . 
E 3 HOH B 21 538 538 HOH HOH . 
E 3 HOH B 22 540 540 HOH HOH . 
E 3 HOH B 23 545 545 HOH HOH . 
E 3 HOH B 24 546 546 HOH HOH . 
E 3 HOH B 25 550 550 HOH HOH . 
E 3 HOH B 26 551 551 HOH HOH . 
E 3 HOH B 27 554 554 HOH HOH . 
E 3 HOH B 28 558 558 HOH HOH . 
E 3 HOH B 29 559 559 HOH HOH . 
E 3 HOH B 30 564 564 HOH HOH . 
E 3 HOH B 31 566 566 HOH HOH . 
E 3 HOH B 32 569 569 HOH HOH . 
E 3 HOH B 33 571 571 HOH HOH . 
E 3 HOH B 34 573 573 HOH HOH . 
E 3 HOH B 35 574 574 HOH HOH . 
E 3 HOH B 36 575 575 HOH HOH . 
E 3 HOH B 37 577 577 HOH HOH . 
E 3 HOH B 38 578 578 HOH HOH . 
E 3 HOH B 39 580 580 HOH HOH . 
E 3 HOH B 40 583 583 HOH HOH . 
E 3 HOH B 41 585 585 HOH HOH . 
E 3 HOH B 42 586 586 HOH HOH . 
E 3 HOH B 43 587 587 HOH HOH . 
E 3 HOH B 44 589 589 HOH HOH . 
E 3 HOH B 45 591 591 HOH HOH . 
E 3 HOH B 46 594 594 HOH HOH . 
E 3 HOH B 47 595 595 HOH HOH . 
E 3 HOH B 48 601 601 HOH HOH . 
E 3 HOH B 49 605 605 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . . . C 2 1.9 14.882 21.671 1 61.44 ? N1 SPM 201 B 1 
HETATM 2 C C2 SPM . . . C 2 1.016 15.472 22.748 1 53.02 ? C2 SPM 201 B 1 
HETATM 3 C C3 SPM . . . C 2 0.463 16.821 22.392 1 50.3 ? C3 SPM 201 B 1 
HETATM 4 C C4 SPM . . . C 2 -0.491 17.333 23.459 1 46.89 ? C4 SPM 201 B 1 
HETATM 5 N N5 SPM . . . C 2 -0.884 18.776 23.237 1 43.44 ? N5 SPM 201 B 1 
HETATM 6 C C6 SPM . . . C 2 -1.867 19.247 24.268 1 47.53 ? C6 SPM 201 B 1 
HETATM 7 C C7 SPM . . . C 2 -1.868 20.741 24.475 1 42.99 ? C7 SPM 201 B 1 
HETATM 8 C C8 SPM . . . C 2 -3.172 21.342 23.956 1 33.81 ? C8 SPM 201 B 1 
HETATM 9 C C9 SPM . . . C 2 -3.671 22.502 24.782 1 22.96 ? C9 SPM 201 B 1 
HETATM 10 N N10 SPM . . . C 2 -2.661 23.62 24.737 1 19.8 ? N10 SPM 201 B 1 
HETATM 11 C C11 SPM . . . C 2 -3.15 24.889 25.355 1 19.65 ? C11 SPM 201 B 1 
HETATM 12 C C12 SPM . . . C 2 -2.135 26.002 25.157 1 19.32 ? C12 SPM 201 B 1 
HETATM 13 C C13 SPM . . . C 2 -2.494 27.143 26.064 1 19.28 ? C13 SPM 201 B 1 
HETATM 14 N N14 SPM . . . C 2 -1.606 28.355 25.671 1 17.61 ? N14 SPM 201 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#