data_1PXA # _model_server_result.job_id 6h77dRiEIJpP0PUzVe2ILg _model_server_result.datetime_utc '2024-12-12 02:07:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":395}' # _entry.id 1PXA # _exptl.entry_id 1PXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PXA _cell.length_a 71.88 _cell.length_b 146.62 _cell.length_c 88.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 146.62 88.27 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1PXA _atom_sites.fract_transf_matrix[1][1] 0.013912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 395 395 FAD FAD . C 3 PHB A 1 396 396 PHB PHB . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 430 430 HOH HOH . D 4 HOH A 31 431 431 HOH HOH . D 4 HOH A 32 432 432 HOH HOH . D 4 HOH A 33 433 433 HOH HOH . D 4 HOH A 34 434 434 HOH HOH . D 4 HOH A 35 435 435 HOH HOH . D 4 HOH A 36 436 436 HOH HOH . D 4 HOH A 37 437 437 HOH HOH . D 4 HOH A 38 438 438 HOH HOH . D 4 HOH A 39 439 439 HOH HOH . D 4 HOH A 40 440 440 HOH HOH . D 4 HOH A 41 441 441 HOH HOH . D 4 HOH A 42 442 442 HOH HOH . D 4 HOH A 43 443 443 HOH HOH . D 4 HOH A 44 444 444 HOH HOH . D 4 HOH A 45 445 445 HOH HOH . D 4 HOH A 46 446 446 HOH HOH . D 4 HOH A 47 447 447 HOH HOH . D 4 HOH A 48 448 448 HOH HOH . D 4 HOH A 49 449 449 HOH HOH . D 4 HOH A 50 450 450 HOH HOH . D 4 HOH A 51 451 451 HOH HOH . D 4 HOH A 52 452 452 HOH HOH . D 4 HOH A 53 453 453 HOH HOH . D 4 HOH A 54 454 454 HOH HOH . D 4 HOH A 55 455 455 HOH HOH . D 4 HOH A 56 456 456 HOH HOH . D 4 HOH A 57 457 457 HOH HOH . D 4 HOH A 58 458 458 HOH HOH . D 4 HOH A 59 459 459 HOH HOH . D 4 HOH A 60 460 460 HOH HOH . D 4 HOH A 61 461 461 HOH HOH . D 4 HOH A 62 462 462 HOH HOH . D 4 HOH A 63 463 463 HOH HOH . D 4 HOH A 64 464 464 HOH HOH . D 4 HOH A 65 465 465 HOH HOH . D 4 HOH A 66 466 466 HOH HOH . D 4 HOH A 67 467 467 HOH HOH . D 4 HOH A 68 468 468 HOH HOH . D 4 HOH A 69 469 469 HOH HOH . D 4 HOH A 70 470 470 HOH HOH . D 4 HOH A 71 471 471 HOH HOH . D 4 HOH A 72 472 472 HOH HOH . D 4 HOH A 73 473 473 HOH HOH . D 4 HOH A 74 474 474 HOH HOH . D 4 HOH A 75 475 475 HOH HOH . D 4 HOH A 76 476 476 HOH HOH . D 4 HOH A 77 477 477 HOH HOH . D 4 HOH A 78 478 478 HOH HOH . D 4 HOH A 79 479 479 HOH HOH . D 4 HOH A 80 480 480 HOH HOH . D 4 HOH A 81 481 481 HOH HOH . D 4 HOH A 82 482 482 HOH HOH . D 4 HOH A 83 483 483 HOH HOH . D 4 HOH A 84 484 484 HOH HOH . D 4 HOH A 85 485 485 HOH HOH . D 4 HOH A 86 486 486 HOH HOH . D 4 HOH A 87 487 487 HOH HOH . D 4 HOH A 88 488 488 HOH HOH . D 4 HOH A 89 489 489 HOH HOH . D 4 HOH A 90 490 490 HOH HOH . D 4 HOH A 91 491 491 HOH HOH . D 4 HOH A 92 492 492 HOH HOH . D 4 HOH A 93 493 493 HOH HOH . D 4 HOH A 94 494 494 HOH HOH . D 4 HOH A 95 495 495 HOH HOH . D 4 HOH A 96 496 496 HOH HOH . D 4 HOH A 97 497 497 HOH HOH . D 4 HOH A 98 498 498 HOH HOH . D 4 HOH A 99 499 499 HOH HOH . D 4 HOH A 100 500 500 HOH HOH . D 4 HOH A 101 501 501 HOH HOH . D 4 HOH A 102 502 502 HOH HOH . D 4 HOH A 103 503 503 HOH HOH . D 4 HOH A 104 504 504 HOH HOH . D 4 HOH A 105 505 505 HOH HOH . D 4 HOH A 106 506 506 HOH HOH . D 4 HOH A 107 507 507 HOH HOH . D 4 HOH A 108 508 508 HOH HOH . D 4 HOH A 109 509 509 HOH HOH . D 4 HOH A 110 510 510 HOH HOH . D 4 HOH A 111 511 511 HOH HOH . D 4 HOH A 112 512 512 HOH HOH . D 4 HOH A 113 513 513 HOH HOH . D 4 HOH A 114 514 514 HOH HOH . D 4 HOH A 115 515 515 HOH HOH . D 4 HOH A 116 516 516 HOH HOH . D 4 HOH A 117 517 517 HOH HOH . D 4 HOH A 118 518 518 HOH HOH . D 4 HOH A 119 519 519 HOH HOH . D 4 HOH A 120 520 520 HOH HOH . D 4 HOH A 121 521 521 HOH HOH . D 4 HOH A 122 522 522 HOH HOH . D 4 HOH A 123 523 523 HOH HOH . D 4 HOH A 124 524 524 HOH HOH . D 4 HOH A 125 525 525 HOH HOH . D 4 HOH A 126 526 526 HOH HOH . D 4 HOH A 127 527 527 HOH HOH . D 4 HOH A 128 528 528 HOH HOH . D 4 HOH A 129 529 529 HOH HOH . D 4 HOH A 130 530 530 HOH HOH . D 4 HOH A 131 531 531 HOH HOH . D 4 HOH A 132 532 532 HOH HOH . D 4 HOH A 133 533 533 HOH HOH . D 4 HOH A 134 534 534 HOH HOH . D 4 HOH A 135 535 535 HOH HOH . D 4 HOH A 136 536 536 HOH HOH . D 4 HOH A 137 537 537 HOH HOH . D 4 HOH A 138 538 538 HOH HOH . D 4 HOH A 139 539 539 HOH HOH . D 4 HOH A 140 540 540 HOH HOH . D 4 HOH A 141 541 541 HOH HOH . D 4 HOH A 142 542 542 HOH HOH . D 4 HOH A 143 543 543 HOH HOH . D 4 HOH A 144 544 544 HOH HOH . D 4 HOH A 145 545 545 HOH HOH . D 4 HOH A 146 546 546 HOH HOH . D 4 HOH A 147 547 547 HOH HOH . D 4 HOH A 148 548 548 HOH HOH . D 4 HOH A 149 549 549 HOH HOH . D 4 HOH A 150 550 550 HOH HOH . D 4 HOH A 151 551 551 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 22.888 97.796 59.806 1 2 ? PA FAD 395 A 1 HETATM 2 O O1A FAD . . . B 2 21.878 98.355 58.949 1 2 ? O1A FAD 395 A 1 HETATM 3 O O2A FAD . . . B 2 24.226 97.446 59.296 1 2 ? O2A FAD 395 A 1 HETATM 4 O O5B FAD . . . B 2 23.083 98.777 61.016 1 2.7 ? O5B FAD 395 A 1 HETATM 5 C C5B FAD . . . B 2 23.965 98.583 62.155 1 2.38 ? C5B FAD 395 A 1 HETATM 6 C C4B FAD . . . B 2 24.431 99.913 62.834 1 2.2 ? C4B FAD 395 A 1 HETATM 7 O O4B FAD . . . B 2 25.262 99.716 63.961 1 2 ? O4B FAD 395 A 1 HETATM 8 C C3B FAD . . . B 2 25.19 100.887 61.958 1 2 ? C3B FAD 395 A 1 HETATM 9 O O3B FAD . . . B 2 24.407 102.051 62.038 1 2 ? O3B FAD 395 A 1 HETATM 10 C C2B FAD . . . B 2 26.605 100.971 62.579 1 2.23 ? C2B FAD 395 A 1 HETATM 11 O O2B FAD . . . B 2 27.411 102.202 62.424 1 2.05 ? O2B FAD 395 A 1 HETATM 12 C C1B FAD . . . B 2 26.297 100.657 64.032 1 2 ? C1B FAD 395 A 1 HETATM 13 N N9A FAD . . . B 2 27.424 100.035 64.706 1 2 ? N9A FAD 395 A 1 HETATM 14 C C8A FAD . . . B 2 28.411 99.24 64.176 1 2 ? C8A FAD 395 A 1 HETATM 15 N N7A FAD . . . B 2 29.423 99.039 64.962 1 2 ? N7A FAD 395 A 1 HETATM 16 C C5A FAD . . . B 2 29.094 99.746 66.111 1 2 ? C5A FAD 395 A 1 HETATM 17 C C6A FAD . . . B 2 29.734 99.911 67.34 1 2 ? C6A FAD 395 A 1 HETATM 18 N N6A FAD . . . B 2 30.924 99.388 67.685 1 2 ? N6A FAD 395 A 1 HETATM 19 N N1A FAD . . . B 2 29.074 100.663 68.234 1 2.78 ? N1A FAD 395 A 1 HETATM 20 C C2A FAD . . . B 2 27.91 101.185 67.935 1 2 ? C2A FAD 395 A 1 HETATM 21 N N3A FAD . . . B 2 27.199 101.109 66.843 1 2 ? N3A FAD 395 A 1 HETATM 22 C C4A FAD . . . B 2 27.866 100.357 65.955 1 2.92 ? C4A FAD 395 A 1 HETATM 23 N N1 FAD . . . B 2 17.771 93.374 52.377 1 2 ? N1 FAD 395 A 1 HETATM 24 C C2 FAD . . . B 2 16.497 93.217 52.018 1 3.07 ? C2 FAD 395 A 1 HETATM 25 O O2 FAD . . . B 2 15.751 92.568 52.719 1 2 ? O2 FAD 395 A 1 HETATM 26 N N3 FAD . . . B 2 16.113 93.733 50.786 1 4.33 ? N3 FAD 395 A 1 HETATM 27 C C4 FAD . . . B 2 16.914 94.376 49.886 1 2 ? C4 FAD 395 A 1 HETATM 28 O O4 FAD . . . B 2 16.324 94.796 48.905 1 2 ? O4 FAD 395 A 1 HETATM 29 C C4X FAD . . . B 2 18.315 94.513 50.313 1 2.67 ? C4X FAD 395 A 1 HETATM 30 N N5 FAD . . . B 2 19.173 95.051 49.449 1 2 ? N5 FAD 395 A 1 HETATM 31 C C5X FAD . . . B 2 20.4 95.111 49.927 1 2 ? C5X FAD 395 A 1 HETATM 32 C C6 FAD . . . B 2 21.359 95.6 49.036 1 2 ? C6 FAD 395 A 1 HETATM 33 C C7 FAD . . . B 2 22.646 95.773 49.347 1 2 ? C7 FAD 395 A 1 HETATM 34 C C7M FAD . . . B 2 23.59 96.201 48.281 1 2 ? C7M FAD 395 A 1 HETATM 35 C C8 FAD . . . B 2 23.059 95.452 50.656 1 2 ? C8 FAD 395 A 1 HETATM 36 C C8M FAD . . . B 2 24.451 95.597 51.158 1 2 ? C8M FAD 395 A 1 HETATM 37 C C9 FAD . . . B 2 22.16 94.985 51.512 1 2.5 ? C9 FAD 395 A 1 HETATM 38 C C9A FAD . . . B 2 20.821 94.798 51.171 1 2 ? C9A FAD 395 A 1 HETATM 39 N N10 FAD . . . B 2 19.891 94.282 52.05 1 2.73 ? N10 FAD 395 A 1 HETATM 40 C C10 FAD . . . B 2 18.628 94.007 51.555 1 2.81 ? C10 FAD 395 A 1 HETATM 41 C C1' FAD . . . B 2 20.223 94.02 53.451 1 2 ? C1' FAD 395 A 1 HETATM 42 C C2' FAD . . . B 2 19.892 95.151 54.444 1 2 ? C2' FAD 395 A 1 HETATM 43 O O2' FAD . . . B 2 20.461 96.345 53.907 1 2.75 ? O2' FAD 395 A 1 HETATM 44 C C3' FAD . . . B 2 20.507 94.855 55.835 1 2 ? C3' FAD 395 A 1 HETATM 45 O O3' FAD . . . B 2 20.231 93.504 56.276 1 2 ? O3' FAD 395 A 1 HETATM 46 C C4' FAD . . . B 2 20.219 95.926 56.918 1 2.43 ? C4' FAD 395 A 1 HETATM 47 O O4' FAD . . . B 2 20.982 97.145 56.769 1 2 ? O4' FAD 395 A 1 HETATM 48 C C5' FAD . . . B 2 20.324 95.32 58.347 1 2 ? C5' FAD 395 A 1 HETATM 49 O O5' FAD . . . B 2 19.979 96.146 59.467 1 2.88 ? O5' FAD 395 A 1 HETATM 50 P P FAD . . . B 2 20.828 96.229 60.85 1 2 ? P FAD 395 A 1 HETATM 51 O O1P FAD . . . B 2 20.262 97.362 61.582 1 2.34 ? O1P FAD 395 A 1 HETATM 52 O O2P FAD . . . B 2 20.759 94.893 61.453 1 2 ? O2P FAD 395 A 1 HETATM 53 O O3P FAD . . . B 2 22.32 96.49 60.483 1 2 ? O3P FAD 395 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #