data_1PXK # _model_server_result.job_id vszYlLhX44GErxFv1wsmeA _model_server_result.datetime_utc '2024-11-23 08:55:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1PXK # _exptl.entry_id 1PXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.292 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[4-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)PYRIMIDIN-2-YL]-N'-HYDROXYIMIDOFORMAMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PXK _cell.length_a 52.744 _cell.length_b 71.948 _cell.length_c 70.525 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H11 N5 O S' _chem_comp.formula_weight 249.292 _chem_comp.id CK3 _chem_comp.mon_nstd_flag . _chem_comp.name "N-[4-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)PYRIMIDIN-2-YL]-N'-HYDROXYIMIDOFORMAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7A C3A CK3 sing 70 n n C7A H7A1 CK3 sing 71 n n C7A H7A2 CK3 sing 72 n n C7A H7A3 CK3 sing 73 n n C3A S4A CK3 sing 74 n y C3A N2A CK3 doub 75 n y S4A C5A CK3 sing 76 n y N2A C1A CK3 sing 77 n y C1A C6A CK3 sing 78 n n C1A C5A CK3 doub 79 n y C6A H6A1 CK3 sing 80 n n C6A H6A2 CK3 sing 81 n n C6A H6A3 CK3 sing 82 n n C5A C4 CK3 sing 83 n y C4 N3 CK3 sing 84 n y C4 C5 CK3 doub 85 n y N3 C2 CK3 doub 86 n y C5 C6 CK3 sing 87 n y C5 H5 CK3 sing 88 n n C6 N1 CK3 doub 89 n y C6 H6 CK3 sing 90 n n N1 C2 CK3 sing 91 n y C2 N7 CK3 sing 92 n n N7 C8 CK3 sing 93 n n N7 HN7 CK3 sing 94 n n C8 N9 CK3 doub 95 z n C8 H8 CK3 sing 96 n n N9 O10 CK3 sing 97 n n O10 H10 CK3 sing 98 n n # _atom_sites.entry_id 1PXK _atom_sites.fract_transf_matrix[1][1] 0.01896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CK3 A 1 500 500 CK3 CK3 . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7A CK3 . A . B 2 14.312 42.242 26.979 0.69 70.78 ? C7A CK3 500 A 1 HETATM 2 C C3A CK3 . A . B 2 14.155 42.992 25.673 0.69 69.87 ? C3A CK3 500 A 1 HETATM 3 S S4A CK3 . A . B 2 12.93 44.167 25.504 0.69 69.97 ? S4A CK3 500 A 1 HETATM 4 N N2A CK3 . A . B 2 14.927 42.801 24.605 0.69 69.82 ? N2A CK3 500 A 1 HETATM 5 C C1A CK3 . A . B 2 14.526 43.631 23.583 0.69 69.04 ? C1A CK3 500 A 1 HETATM 6 C C6A CK3 . A . B 2 15.31 43.546 22.278 0.69 68.9 ? C6A CK3 500 A 1 HETATM 7 C C5A CK3 . A . B 2 13.453 44.474 23.875 0.69 68.28 ? C5A CK3 500 A 1 HETATM 8 C C4 CK3 . A . B 2 12.707 45.448 23.136 0.69 67.01 ? C4 CK3 500 A 1 HETATM 9 N N3 CK3 . A . B 2 11.837 46.226 23.793 0.69 66.26 ? N3 CK3 500 A 1 HETATM 10 C C5 CK3 . A . B 2 12.857 45.625 21.735 0.69 66.1 ? C5 CK3 500 A 1 HETATM 11 C C6 CK3 . A . B 2 12.059 46.605 21.113 0.69 65.68 ? C6 CK3 500 A 1 HETATM 12 N N1 CK3 . A . B 2 11.211 47.341 21.819 0.69 66.25 ? N1 CK3 500 A 1 HETATM 13 C C2 CK3 . A . B 2 11.151 47.132 23.128 0.69 66.09 ? C2 CK3 500 A 1 HETATM 14 N N7 CK3 . A . B 2 10.246 47.89 23.944 0.69 66.25 ? N7 CK3 500 A 1 HETATM 15 C C8 CK3 . A . B 2 9.207 47.428 24.798 0.69 66.35 ? C8 CK3 500 A 1 HETATM 16 N N9 CK3 . A . B 2 8.481 48.231 25.458 0.69 68.11 ? N9 CK3 500 A 1 HETATM 17 O O10 CK3 . A . B 2 8.526 49.543 25.485 0.69 72.12 ? O10 CK3 500 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 17 #