data_1PXP # _model_server_result.job_id GS57DtIPsMdD-Ny1kXRTdw _model_server_result.datetime_utc '2024-12-02 14:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1PXP # _exptl.entry_id 1PXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[4-(2,4-DIMETHYL-THIAZOL-5-YL)-PYRIMIDIN-2-YL]-N',N'-DIMETHYL-BENZENE-1,4-DIAMINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PXP _cell.length_a 53.337 _cell.length_b 71.794 _cell.length_c 71.414 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 N5 S' _chem_comp.formula_weight 325.431 _chem_comp.id CK8 _chem_comp.mon_nstd_flag . _chem_comp.name "N-[4-(2,4-DIMETHYL-THIAZOL-5-YL)-PYRIMIDIN-2-YL]-N',N'-DIMETHYL-BENZENE-1,4-DIAMINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 CK8 doub 70 n y C6 C5 CK8 sing 71 n y C6 H6 CK8 sing 72 n n N1 C2 CK8 sing 73 n y C2 N3 CK8 doub 74 n y C2 N7 CK8 sing 75 n n N3 C4 CK8 sing 76 n y C4 C5 CK8 doub 77 n y C4 C5A CK8 sing 78 n y C5 H5 CK8 sing 79 n n C5A C1A CK8 doub 80 n y C5A S4A CK8 sing 81 n y C1A N2A CK8 sing 82 n y C1A C6A CK8 sing 83 n n N2A C3A CK8 doub 84 n y C3A S4A CK8 sing 85 n y C3A C7A CK8 sing 86 n n C6A H6A1 CK8 sing 87 n n C6A H6A2 CK8 sing 88 n n C6A H6A3 CK8 sing 89 n n C7A H7A1 CK8 sing 90 n n C7A H7A2 CK8 sing 91 n n C7A H7A3 CK8 sing 92 n n N7 C1B CK8 sing 93 n n N7 HN7 CK8 sing 94 n n C1B C2B CK8 doub 95 n y C1B C6B CK8 sing 96 n y C2B C3B CK8 sing 97 n y C2B H2B CK8 sing 98 n n C3B C4B CK8 doub 99 n y C3B H3B CK8 sing 100 n n C4B C5B CK8 sing 101 n y C4B N7B CK8 sing 102 n n C5B C6B CK8 doub 103 n y C5B H5B CK8 sing 104 n n C6B H6B CK8 sing 105 n n N7B C8B CK8 sing 106 n n N7B C9B CK8 sing 107 n n C8B H8B1 CK8 sing 108 n n C8B H8B2 CK8 sing 109 n n C8B H8B3 CK8 sing 110 n n C9B H9B1 CK8 sing 111 n n C9B H9B2 CK8 sing 112 n n C9B H9B3 CK8 sing 113 n n # _atom_sites.entry_id 1PXP _atom_sites.fract_transf_matrix[1][1] 0.018749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CK8 A 1 500 500 CK8 CK8 . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 512 512 HOH HOH . C 3 HOH A 12 513 513 HOH HOH . C 3 HOH A 13 514 514 HOH HOH . C 3 HOH A 14 515 515 HOH HOH . C 3 HOH A 15 516 516 HOH HOH . C 3 HOH A 16 517 517 HOH HOH . C 3 HOH A 17 518 518 HOH HOH . C 3 HOH A 18 519 519 HOH HOH . C 3 HOH A 19 520 520 HOH HOH . C 3 HOH A 20 521 521 HOH HOH . C 3 HOH A 21 522 522 HOH HOH . C 3 HOH A 22 523 523 HOH HOH . C 3 HOH A 23 524 524 HOH HOH . C 3 HOH A 24 525 525 HOH HOH . C 3 HOH A 25 526 526 HOH HOH . C 3 HOH A 26 527 527 HOH HOH . C 3 HOH A 27 528 528 HOH HOH . C 3 HOH A 28 529 529 HOH HOH . C 3 HOH A 29 530 530 HOH HOH . C 3 HOH A 30 531 531 HOH HOH . C 3 HOH A 31 532 532 HOH HOH . C 3 HOH A 32 533 533 HOH HOH . C 3 HOH A 33 534 534 HOH HOH . C 3 HOH A 34 535 535 HOH HOH . C 3 HOH A 35 536 536 HOH HOH . C 3 HOH A 36 537 537 HOH HOH . C 3 HOH A 37 538 538 HOH HOH . C 3 HOH A 38 539 539 HOH HOH . C 3 HOH A 39 540 540 HOH HOH . C 3 HOH A 40 541 541 HOH HOH . C 3 HOH A 41 542 542 HOH HOH . C 3 HOH A 42 543 543 HOH HOH . C 3 HOH A 43 544 544 HOH HOH . C 3 HOH A 44 545 545 HOH HOH . C 3 HOH A 45 546 546 HOH HOH . C 3 HOH A 46 547 547 HOH HOH . C 3 HOH A 47 548 548 HOH HOH . C 3 HOH A 48 549 549 HOH HOH . C 3 HOH A 49 550 550 HOH HOH . C 3 HOH A 50 551 551 HOH HOH . C 3 HOH A 51 552 552 HOH HOH . C 3 HOH A 52 553 553 HOH HOH . C 3 HOH A 53 554 554 HOH HOH . C 3 HOH A 54 555 555 HOH HOH . C 3 HOH A 55 556 556 HOH HOH . C 3 HOH A 56 557 557 HOH HOH . C 3 HOH A 57 558 558 HOH HOH . C 3 HOH A 58 560 560 HOH HOH . C 3 HOH A 59 561 561 HOH HOH . C 3 HOH A 60 562 562 HOH HOH . C 3 HOH A 61 563 563 HOH HOH . C 3 HOH A 62 564 564 HOH HOH . C 3 HOH A 63 565 565 HOH HOH . C 3 HOH A 64 566 566 HOH HOH . C 3 HOH A 65 567 567 HOH HOH . C 3 HOH A 66 581 581 HOH HOH . C 3 HOH A 67 588 588 HOH HOH . C 3 HOH A 68 589 589 HOH HOH . C 3 HOH A 69 592 592 HOH HOH . C 3 HOH A 70 593 593 HOH HOH . C 3 HOH A 71 595 595 HOH HOH . C 3 HOH A 72 596 596 HOH HOH . C 3 HOH A 73 597 597 HOH HOH . C 3 HOH A 74 598 598 HOH HOH . C 3 HOH A 75 599 599 HOH HOH . C 3 HOH A 76 600 600 HOH HOH . C 3 HOH A 77 601 601 HOH HOH . C 3 HOH A 78 602 602 HOH HOH . C 3 HOH A 79 603 603 HOH HOH . C 3 HOH A 80 604 604 HOH HOH . C 3 HOH A 81 605 605 HOH HOH . C 3 HOH A 82 606 606 HOH HOH . C 3 HOH A 83 607 607 HOH HOH . C 3 HOH A 84 608 608 HOH HOH . C 3 HOH A 85 609 609 HOH HOH . C 3 HOH A 86 610 610 HOH HOH . C 3 HOH A 87 611 611 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 CK8 . A . B 2 25.84 38.933 7.693 0.8 29.83 ? C6 CK8 500 A 1 HETATM 2 N N1 CK8 . A . B 2 24.807 39.625 7.158 0.8 30.94 ? N1 CK8 500 A 1 HETATM 3 C C2 CK8 . A . B 2 24.634 40.889 7.54 0.8 29.47 ? C2 CK8 500 A 1 HETATM 4 N N3 CK8 . A . B 2 25.407 41.531 8.414 0.8 31.43 ? N3 CK8 500 A 1 HETATM 5 C C4 CK8 . A . B 2 26.458 40.912 8.987 0.8 31.01 ? C4 CK8 500 A 1 HETATM 6 C C5 CK8 . A . B 2 26.726 39.53 8.638 0.8 30.7 ? C5 CK8 500 A 1 HETATM 7 C C5A CK8 . A . B 2 27.23 41.703 9.921 0.8 33.64 ? C5A CK8 500 A 1 HETATM 8 C C1A CK8 . A . B 2 28.488 41.558 10.551 0.8 34.14 ? C1A CK8 500 A 1 HETATM 9 N N2A CK8 . A . B 2 28.838 42.588 11.393 0.8 36.15 ? N2A CK8 500 A 1 HETATM 10 C C3A CK8 . A . B 2 27.88 43.516 11.423 0.8 36.09 ? C3A CK8 500 A 1 HETATM 11 S S4A CK8 . A . B 2 26.52 43.212 10.451 0.8 34.67 ? S4A CK8 500 A 1 HETATM 12 C C6A CK8 . A . B 2 29.486 40.414 10.409 0.8 33.4 ? C6A CK8 500 A 1 HETATM 13 C C7A CK8 . A . B 2 27.95 44.781 12.254 0.8 37.07 ? C7A CK8 500 A 1 HETATM 14 N N7 CK8 . A . B 2 23.522 41.571 6.943 0.8 30.24 ? N7 CK8 500 A 1 HETATM 15 C C1B CK8 . A . B 2 22.931 42.898 7.044 0.8 31.63 ? C1B CK8 500 A 1 HETATM 16 C C2B CK8 . A . B 2 23.427 43.911 7.925 0.8 33.44 ? C2B CK8 500 A 1 HETATM 17 C C3B CK8 . A . B 2 22.812 45.181 7.976 0.8 34.5 ? C3B CK8 500 A 1 HETATM 18 C C4B CK8 . A . B 2 21.676 45.489 7.147 0.8 33.85 ? C4B CK8 500 A 1 HETATM 19 C C5B CK8 . A . B 2 21.19 44.454 6.271 0.8 31.68 ? C5B CK8 500 A 1 HETATM 20 C C6B CK8 . A . B 2 21.807 43.183 6.225 0.8 32.13 ? C6B CK8 500 A 1 HETATM 21 N N7B CK8 . A . B 2 21.026 46.845 7.198 0.8 35.82 ? N7B CK8 500 A 1 HETATM 22 C C8B CK8 . A . B 2 19.847 47.208 6.356 0.8 39.03 ? C8B CK8 500 A 1 HETATM 23 C C9B CK8 . A . B 2 21.513 47.936 8.096 0.8 35.97 ? C9B CK8 500 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #