data_1PYH # _model_server_result.job_id 1GxEZmUE4AbFOR-s1MM9-g _model_server_result.datetime_utc '2025-03-06 02:19:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":301}' # _entry.id 1PYH # _exptl.entry_id 1PYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 34 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.32 _cell.angle_beta 72.69 _cell.angle_gamma 66.52 _cell.entry_id 1PYH _cell.length_a 76.037 _cell.length_b 119.024 _cell.length_c 130.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 IA N N ? 6 JA N N ? 6 MA N N ? 6 NA N N ? 6 PA N N ? 6 QA N N ? 6 RA N N ? 6 SA N N ? 6 TA N N ? 6 UA N N ? 6 VA N N ? 6 WA N N ? 6 XA N N ? 6 YA N N ? 6 ZA N N ? 6 AB N N ? 6 BB N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N ? 6 IB N N ? 6 JB N N ? 6 KB N N ? 6 LB N N ? 6 MB N N ? 6 NB N N ? 6 OB N N ? 6 PB N N ? 6 QB N N ? 6 RB N N ? 6 SB N N # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 1 n n MG NB BCL sing 2 n n MG NC BCL sing 3 n n MG ND BCL sing 4 n n CHA C1A BCL sing 5 n n CHA C4D BCL doub 6 n n CHA CBD BCL sing 7 n n CHB C4A BCL doub 8 n n CHB C1B BCL sing 9 n n CHB HHB BCL sing 10 n n CHC C4B BCL sing 11 n n CHC C1C BCL doub 12 n n CHC HHC BCL sing 13 n n CHD C4C BCL sing 14 n n CHD C1D BCL doub 15 n n CHD HHD BCL sing 16 n n NA C1A BCL doub 17 n n NA C4A BCL sing 18 n n C1A C2A BCL sing 19 n n C2A C3A BCL sing 20 n n C2A CAA BCL sing 21 n n C2A H2A BCL sing 22 n n C3A C4A BCL sing 23 n n C3A CMA BCL sing 24 n n C3A H3A BCL sing 25 n n CMA HMA1 BCL sing 26 n n CMA HMA2 BCL sing 27 n n CMA HMA3 BCL sing 28 n n CAA CBA BCL sing 29 n n CAA HAA1 BCL sing 30 n n CAA HAA2 BCL sing 31 n n CBA CGA BCL sing 32 n n CBA HBA1 BCL sing 33 n n CBA HBA2 BCL sing 34 n n CGA O1A BCL doub 35 n n CGA O2A BCL sing 36 n n O2A C1 BCL sing 37 n n NB C1B BCL sing 38 n y NB C4B BCL sing 39 n y C1B C2B BCL doub 40 n y C2B C3B BCL sing 41 n y C2B CMB BCL sing 42 n n C3B C4B BCL doub 43 n y C3B CAB BCL sing 44 n n CMB HMB1 BCL sing 45 n n CMB HMB2 BCL sing 46 n n CMB HMB3 BCL sing 47 n n CAB OBB BCL doub 48 n n CAB CBB BCL sing 49 n n CBB HBB1 BCL sing 50 n n CBB HBB2 BCL sing 51 n n CBB HBB3 BCL sing 52 n n NC C1C BCL sing 53 n n NC C4C BCL doub 54 n n C1C C2C BCL sing 55 n n C2C C3C BCL sing 56 n n C2C CMC BCL sing 57 n n C2C H2C BCL sing 58 n n C3C C4C BCL sing 59 n n C3C CAC BCL sing 60 n n C3C H3C BCL sing 61 n n CMC HMC1 BCL sing 62 n n CMC HMC2 BCL sing 63 n n CMC HMC3 BCL sing 64 n n CAC CBC BCL sing 65 n n CAC HAC1 BCL sing 66 n n CAC HAC2 BCL sing 67 n n CBC HBC1 BCL sing 68 n n CBC HBC2 BCL sing 69 n n CBC HBC3 BCL sing 70 n n ND C1D BCL sing 71 n n ND C4D BCL sing 72 n n C1D C2D BCL sing 73 n n C2D C3D BCL doub 74 n n C2D CMD BCL sing 75 n n C3D C4D BCL sing 76 n n C3D CAD BCL sing 77 n n CMD HMD1 BCL sing 78 n n CMD HMD2 BCL sing 79 n n CMD HMD3 BCL sing 80 n n CAD OBD BCL doub 81 n n CAD CBD BCL sing 82 n n CBD CGD BCL sing 83 n n CBD HBD BCL sing 84 n n CGD O1D BCL doub 85 n n CGD O2D BCL sing 86 n n O2D CED BCL sing 87 n n CED HED1 BCL sing 88 n n CED HED2 BCL sing 89 n n CED HED3 BCL sing 90 n n C1 C2 BCL sing 91 n n C1 H11 BCL sing 92 n n C1 H12 BCL sing 93 n n C2 C3 BCL doub 94 e n C2 H2 BCL sing 95 n n C3 C4 BCL sing 96 n n C3 C5 BCL sing 97 n n C4 H41 BCL sing 98 n n C4 H42 BCL sing 99 n n C4 H43 BCL sing 100 n n C5 C6 BCL sing 101 n n C5 H51 BCL sing 102 n n C5 H52 BCL sing 103 n n C6 C7 BCL sing 104 n n C6 H61 BCL sing 105 n n C6 H62 BCL sing 106 n n C7 C8 BCL sing 107 n n C7 H71 BCL sing 108 n n C7 H72 BCL sing 109 n n C8 C9 BCL sing 110 n n C8 C10 BCL sing 111 n n C8 H8 BCL sing 112 n n C9 H91 BCL sing 113 n n C9 H92 BCL sing 114 n n C9 H93 BCL sing 115 n n C10 C11 BCL sing 116 n n C10 H101 BCL sing 117 n n C10 H102 BCL sing 118 n n C11 C12 BCL sing 119 n n C11 H111 BCL sing 120 n n C11 H112 BCL sing 121 n n C12 C13 BCL sing 122 n n C12 H121 BCL sing 123 n n C12 H122 BCL sing 124 n n C13 C14 BCL sing 125 n n C13 C15 BCL sing 126 n n C13 H13 BCL sing 127 n n C14 H141 BCL sing 128 n n C14 H142 BCL sing 129 n n C14 H143 BCL sing 130 n n C15 C16 BCL sing 131 n n C15 H151 BCL sing 132 n n C15 H152 BCL sing 133 n n C16 C17 BCL sing 134 n n C16 H161 BCL sing 135 n n C16 H162 BCL sing 136 n n C17 C18 BCL sing 137 n n C17 H171 BCL sing 138 n n C17 H172 BCL sing 139 n n C18 C19 BCL sing 140 n n C18 C20 BCL sing 141 n n C18 H18 BCL sing 142 n n C19 H191 BCL sing 143 n n C19 H192 BCL sing 144 n n C19 H193 BCL sing 145 n n C20 H201 BCL sing 146 n n C20 H202 BCL sing 147 n n C20 H203 BCL sing 148 n n # _atom_sites.entry_id 1PYH _atom_sites.fract_transf_matrix[1][1] 0.013151 _atom_sites.fract_transf_matrix[1][2] -0.005713 _atom_sites.fract_transf_matrix[1][3] -0.002667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00916 _atom_sites.fract_transf_matrix[2][3] -0.002546 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 6 BCL A 1 301 301 BCL BCL . JA 6 BCL A 1 302 302 BCL BCL . KA 7 BPH A 1 401 401 BPH BPH . LA 8 FE B 1 500 500 FE FE . MA 6 BCL B 1 303 303 BCL BCL . NA 6 BCL B 1 304 304 BCL BCL . OA 7 BPH B 1 402 402 BPH BPH . PA 6 BCL D 1 2 2 BCL BCL . QA 6 BCL E 1 1 1 BCL BCL . RA 6 BCL F 1 4 4 BCL BCL . SA 6 BCL G 1 3 3 BCL BCL . TA 6 BCL H 1 6 6 BCL BCL . UA 6 BCL I 1 5 5 BCL BCL . VA 6 BCL J 1 8 8 BCL BCL . WA 6 BCL K 1 36 7 BCL BCL . XA 6 BCL L 1 10 10 BCL BCL . YA 6 BCL M 1 36 9 BCL BCL . ZA 6 BCL N 1 11 11 BCL BCL . AB 6 BCL N 1 38 12 BCL BCL . BB 6 BCL P 1 38 13 BCL BCL . CB 6 BCL P 1 39 14 BCL BCL . DB 6 BCL R 1 38 16 BCL BCL . EB 6 BCL S 1 36 15 BCL BCL . FB 6 BCL T 1 38 18 BCL BCL . GB 6 BCL U 1 36 17 BCL BCL . HB 6 BCL V 1 38 19 BCL BCL . IB 6 BCL W 1 36 20 BCL BCL . JB 6 BCL Y 1 36 21 BCL BCL . KB 6 BCL Y 1 37 22 BCL BCL . LB 6 BCL 1 1 38 26 BCL BCL . MB 6 BCL 2 1 36 25 BCL BCL . NB 6 BCL 3 1 38 27 BCL BCL . OB 6 BCL 3 1 39 28 BCL BCL . PB 6 BCL 5 1 38 30 BCL BCL . QB 6 BCL 6 1 36 29 BCL BCL . RB 6 BCL 7 1 38 32 BCL BCL . SB 6 BCL 8 1 36 31 BCL BCL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . IA 6 16.128 -0.477 -11.997 1 198.26 ? MG BCL 301 A 1 HETATM 2 C CHA BCL . . . IA 6 14.852 -3.537 -11.034 1 198.26 ? CHA BCL 301 A 1 HETATM 3 C CHB BCL . . . IA 6 13.933 -0.536 -14.585 1 198.26 ? CHB BCL 301 A 1 HETATM 4 C CHC BCL . . . IA 6 16.426 2.879 -12.279 1 198.26 ? CHC BCL 301 A 1 HETATM 5 C CHD BCL . . . IA 6 17.965 -0.332 -9.105 1 198.26 ? CHD BCL 301 A 1 HETATM 6 N NA BCL . . . IA 6 14.585 -1.834 -12.645 1 198.26 ? NA BCL 301 A 1 HETATM 7 C C1A BCL . . . IA 6 14.259 -3.085 -12.147 1 198.26 ? C1A BCL 301 A 1 HETATM 8 C C2A BCL . . . IA 6 13.302 -3.833 -13.019 1 198.26 ? C2A BCL 301 A 1 HETATM 9 C C3A BCL . . . IA 6 13.194 -2.931 -14.209 1 198.26 ? C3A BCL 301 A 1 HETATM 10 C C4A BCL . . . IA 6 13.929 -1.7 -13.797 1 198.26 ? C4A BCL 301 A 1 HETATM 11 C CMA BCL . . . IA 6 14.043 -3.601 -15.27 1 198.26 ? CMA BCL 301 A 1 HETATM 12 C CAA BCL . . . IA 6 11.922 -3.775 -12.362 1 198.26 ? CAA BCL 301 A 1 HETATM 13 C CBA BCL . . . IA 6 11.4 -2.344 -12.103 1 198.26 ? CBA BCL 301 A 1 HETATM 14 C CGA BCL . . . IA 6 10.032 -2.169 -11.543 1 198.26 ? CGA BCL 301 A 1 HETATM 15 O O1A BCL . . . IA 6 9.491 -2.845 -10.712 1 198.26 ? O1A BCL 301 A 1 HETATM 16 O O2A BCL . . . IA 6 9.379 -1.101 -11.976 1 198.26 ? O2A BCL 301 A 1 HETATM 17 N NB BCL . . . IA 6 15.245 0.967 -13.172 1 198.26 ? NB BCL 301 A 1 HETATM 18 C C1B BCL . . . IA 6 14.402 0.702 -14.231 1 198.26 ? C1B BCL 301 A 1 HETATM 19 C C2B BCL . . . IA 6 14.15 1.95 -14.902 1 198.26 ? C2B BCL 301 A 1 HETATM 20 C C3B BCL . . . IA 6 14.832 2.932 -14.249 1 198.26 ? C3B BCL 301 A 1 HETATM 21 C C4B BCL . . . IA 6 15.542 2.303 -13.137 1 198.26 ? C4B BCL 301 A 1 HETATM 22 C CMB BCL . . . IA 6 13.235 2.014 -16.111 1 198.26 ? CMB BCL 301 A 1 HETATM 23 C CAB BCL . . . IA 6 14.888 4.423 -14.515 1 198.26 ? CAB BCL 301 A 1 HETATM 24 O OBB BCL . . . IA 6 15.354 5.244 -13.764 1 198.26 ? OBB BCL 301 A 1 HETATM 25 C CBB BCL . . . IA 6 14.311 5.009 -15.729 1 198.26 ? CBB BCL 301 A 1 HETATM 26 N NC BCL . . . IA 6 17.048 1.051 -10.853 1 198.26 ? NC BCL 301 A 1 HETATM 27 C C1C BCL . . . IA 6 17.206 2.311 -11.269 1 198.26 ? C1C BCL 301 A 1 HETATM 28 C C2C BCL . . . IA 6 18.243 3.088 -10.548 1 198.26 ? C2C BCL 301 A 1 HETATM 29 C C3C BCL . . . IA 6 18.685 2.081 -9.507 1 198.26 ? C3C BCL 301 A 1 HETATM 30 C C4C BCL . . . IA 6 17.897 0.843 -9.826 1 198.26 ? C4C BCL 301 A 1 HETATM 31 C CMC BCL . . . IA 6 19.455 3.409 -11.452 1 198.26 ? CMC BCL 301 A 1 HETATM 32 C CAC BCL . . . IA 6 18.413 2.464 -8.075 1 198.26 ? CAC BCL 301 A 1 HETATM 33 C CBC BCL . . . IA 6 16.961 2.784 -7.808 1 198.26 ? CBC BCL 301 A 1 HETATM 34 N ND BCL . . . IA 6 16.289 -1.631 -10.299 1 198.26 ? ND BCL 301 A 1 HETATM 35 C C1D BCL . . . IA 6 17.246 -1.528 -9.312 1 198.26 ? C1D BCL 301 A 1 HETATM 36 C C2D BCL . . . IA 6 17.342 -2.79 -8.644 1 198.26 ? C2D BCL 301 A 1 HETATM 37 C C3D BCL . . . IA 6 16.448 -3.636 -9.269 1 198.26 ? C3D BCL 301 A 1 HETATM 38 C C4D BCL . . . IA 6 15.838 -2.893 -10.298 1 198.26 ? C4D BCL 301 A 1 HETATM 39 C CMD BCL . . . IA 6 18.238 -3.106 -7.504 1 198.26 ? CMD BCL 301 A 1 HETATM 40 C CAD BCL . . . IA 6 15.895 -4.976 -9.289 1 198.26 ? CAD BCL 301 A 1 HETATM 41 O OBD BCL . . . IA 6 16.144 -5.999 -8.666 1 198.26 ? OBD BCL 301 A 1 HETATM 42 C CBD BCL . . . IA 6 14.913 -4.926 -10.492 1 198.26 ? CBD BCL 301 A 1 HETATM 43 C CGD BCL . . . IA 6 15.118 -6.033 -11.468 1 198.26 ? CGD BCL 301 A 1 HETATM 44 O O1D BCL . . . IA 6 14.438 -6.988 -11.617 1 198.26 ? O1D BCL 301 A 1 HETATM 45 O O2D BCL . . . IA 6 16.23 -5.865 -12.169 1 198.26 ? O2D BCL 301 A 1 HETATM 46 C CED BCL . . . IA 6 16.27 -6.996 -13.003 1 198.26 ? CED BCL 301 A 1 HETATM 47 C C1 BCL . . . IA 6 8.044 -0.682 -11.608 1 198.26 ? C1 BCL 301 A 1 HETATM 48 C C2 BCL . . . IA 6 6.94 -1.532 -12.237 1 198.26 ? C2 BCL 301 A 1 HETATM 49 C C3 BCL . . . IA 6 6.133 -1.242 -13.237 1 198.26 ? C3 BCL 301 A 1 HETATM 50 C C4 BCL . . . IA 6 5.098 -2.282 -13.605 1 198.26 ? C4 BCL 301 A 1 HETATM 51 C C5 BCL . . . IA 6 6.145 -0.006 -14.097 1 198.26 ? C5 BCL 301 A 1 HETATM 52 C C6 BCL . . . IA 6 6.421 -0.453 -15.541 1 198.26 ? C6 BCL 301 A 1 HETATM 53 C C7 BCL . . . IA 6 7.055 -1.854 -15.625 1 198.26 ? C7 BCL 301 A 1 HETATM 54 C C8 BCL . . . IA 6 8.125 -2.143 -16.696 1 198.26 ? C8 BCL 301 A 1 HETATM 55 C C9 BCL . . . IA 6 8.516 -3.625 -16.559 1 198.26 ? C9 BCL 301 A 1 HETATM 56 C C10 BCL . . . IA 6 9.354 -1.22 -16.611 1 198.26 ? C10 BCL 301 A 1 HETATM 57 C C11 BCL . . . IA 6 10.661 -1.832 -17.115 1 198.26 ? C11 BCL 301 A 1 HETATM 58 C C12 BCL . . . IA 6 11.02 -1.403 -18.52 1 198.26 ? C12 BCL 301 A 1 HETATM 59 C C13 BCL . . . IA 6 12.132 -2.287 -19.065 1 198.26 ? C13 BCL 301 A 1 HETATM 60 C C14 BCL . . . IA 6 12.972 -1.51 -20.074 1 198.26 ? C14 BCL 301 A 1 HETATM 61 C C15 BCL . . . IA 6 11.542 -3.542 -19.713 1 198.26 ? C15 BCL 301 A 1 HETATM 62 C C16 BCL . . . IA 6 12.523 -4.71 -19.837 1 198.26 ? C16 BCL 301 A 1 HETATM 63 C C17 BCL . . . IA 6 12.921 -4.943 -21.291 1 198.26 ? C17 BCL 301 A 1 HETATM 64 C C18 BCL . . . IA 6 13.418 -6.351 -21.64 1 198.26 ? C18 BCL 301 A 1 HETATM 65 C C19 BCL . . . IA 6 12.741 -6.817 -22.916 1 198.26 ? C19 BCL 301 A 1 HETATM 66 C C20 BCL . . . IA 6 13.215 -7.386 -20.533 1 198.26 ? C20 BCL 301 A 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 469 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 66 #