data_1PYH # _model_server_result.job_id CoN3XkAnwkyrEGj5p7QpAA _model_server_result.datetime_utc '2024-11-12 20:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":302}' # _entry.id 1PYH # _exptl.entry_id 1PYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 34 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.32 _cell.angle_beta 72.69 _cell.angle_gamma 66.52 _cell.entry_id 1PYH _cell.length_a 76.037 _cell.length_b 119.024 _cell.length_c 130.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 IA N N ? 6 JA N N ? 6 MA N N ? 6 NA N N ? 6 PA N N ? 6 QA N N ? 6 RA N N ? 6 SA N N ? 6 TA N N ? 6 UA N N ? 6 VA N N ? 6 WA N N ? 6 XA N N ? 6 YA N N ? 6 ZA N N ? 6 AB N N ? 6 BB N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N ? 6 IB N N ? 6 JB N N ? 6 KB N N ? 6 LB N N ? 6 MB N N ? 6 NB N N ? 6 OB N N ? 6 PB N N ? 6 QB N N ? 6 RB N N ? 6 SB N N # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 1 n n MG NB BCL sing 2 n n MG NC BCL sing 3 n n MG ND BCL sing 4 n n CHA C1A BCL sing 5 n n CHA C4D BCL doub 6 n n CHA CBD BCL sing 7 n n CHB C4A BCL doub 8 n n CHB C1B BCL sing 9 n n CHB HHB BCL sing 10 n n CHC C4B BCL sing 11 n n CHC C1C BCL doub 12 n n CHC HHC BCL sing 13 n n CHD C4C BCL sing 14 n n CHD C1D BCL doub 15 n n CHD HHD BCL sing 16 n n NA C1A BCL doub 17 n n NA C4A BCL sing 18 n n C1A C2A BCL sing 19 n n C2A C3A BCL sing 20 n n C2A CAA BCL sing 21 n n C2A H2A BCL sing 22 n n C3A C4A BCL sing 23 n n C3A CMA BCL sing 24 n n C3A H3A BCL sing 25 n n CMA HMA1 BCL sing 26 n n CMA HMA2 BCL sing 27 n n CMA HMA3 BCL sing 28 n n CAA CBA BCL sing 29 n n CAA HAA1 BCL sing 30 n n CAA HAA2 BCL sing 31 n n CBA CGA BCL sing 32 n n CBA HBA1 BCL sing 33 n n CBA HBA2 BCL sing 34 n n CGA O1A BCL doub 35 n n CGA O2A BCL sing 36 n n O2A C1 BCL sing 37 n n NB C1B BCL sing 38 n y NB C4B BCL sing 39 n y C1B C2B BCL doub 40 n y C2B C3B BCL sing 41 n y C2B CMB BCL sing 42 n n C3B C4B BCL doub 43 n y C3B CAB BCL sing 44 n n CMB HMB1 BCL sing 45 n n CMB HMB2 BCL sing 46 n n CMB HMB3 BCL sing 47 n n CAB OBB BCL doub 48 n n CAB CBB BCL sing 49 n n CBB HBB1 BCL sing 50 n n CBB HBB2 BCL sing 51 n n CBB HBB3 BCL sing 52 n n NC C1C BCL sing 53 n n NC C4C BCL doub 54 n n C1C C2C BCL sing 55 n n C2C C3C BCL sing 56 n n C2C CMC BCL sing 57 n n C2C H2C BCL sing 58 n n C3C C4C BCL sing 59 n n C3C CAC BCL sing 60 n n C3C H3C BCL sing 61 n n CMC HMC1 BCL sing 62 n n CMC HMC2 BCL sing 63 n n CMC HMC3 BCL sing 64 n n CAC CBC BCL sing 65 n n CAC HAC1 BCL sing 66 n n CAC HAC2 BCL sing 67 n n CBC HBC1 BCL sing 68 n n CBC HBC2 BCL sing 69 n n CBC HBC3 BCL sing 70 n n ND C1D BCL sing 71 n n ND C4D BCL sing 72 n n C1D C2D BCL sing 73 n n C2D C3D BCL doub 74 n n C2D CMD BCL sing 75 n n C3D C4D BCL sing 76 n n C3D CAD BCL sing 77 n n CMD HMD1 BCL sing 78 n n CMD HMD2 BCL sing 79 n n CMD HMD3 BCL sing 80 n n CAD OBD BCL doub 81 n n CAD CBD BCL sing 82 n n CBD CGD BCL sing 83 n n CBD HBD BCL sing 84 n n CGD O1D BCL doub 85 n n CGD O2D BCL sing 86 n n O2D CED BCL sing 87 n n CED HED1 BCL sing 88 n n CED HED2 BCL sing 89 n n CED HED3 BCL sing 90 n n C1 C2 BCL sing 91 n n C1 H11 BCL sing 92 n n C1 H12 BCL sing 93 n n C2 C3 BCL doub 94 e n C2 H2 BCL sing 95 n n C3 C4 BCL sing 96 n n C3 C5 BCL sing 97 n n C4 H41 BCL sing 98 n n C4 H42 BCL sing 99 n n C4 H43 BCL sing 100 n n C5 C6 BCL sing 101 n n C5 H51 BCL sing 102 n n C5 H52 BCL sing 103 n n C6 C7 BCL sing 104 n n C6 H61 BCL sing 105 n n C6 H62 BCL sing 106 n n C7 C8 BCL sing 107 n n C7 H71 BCL sing 108 n n C7 H72 BCL sing 109 n n C8 C9 BCL sing 110 n n C8 C10 BCL sing 111 n n C8 H8 BCL sing 112 n n C9 H91 BCL sing 113 n n C9 H92 BCL sing 114 n n C9 H93 BCL sing 115 n n C10 C11 BCL sing 116 n n C10 H101 BCL sing 117 n n C10 H102 BCL sing 118 n n C11 C12 BCL sing 119 n n C11 H111 BCL sing 120 n n C11 H112 BCL sing 121 n n C12 C13 BCL sing 122 n n C12 H121 BCL sing 123 n n C12 H122 BCL sing 124 n n C13 C14 BCL sing 125 n n C13 C15 BCL sing 126 n n C13 H13 BCL sing 127 n n C14 H141 BCL sing 128 n n C14 H142 BCL sing 129 n n C14 H143 BCL sing 130 n n C15 C16 BCL sing 131 n n C15 H151 BCL sing 132 n n C15 H152 BCL sing 133 n n C16 C17 BCL sing 134 n n C16 H161 BCL sing 135 n n C16 H162 BCL sing 136 n n C17 C18 BCL sing 137 n n C17 H171 BCL sing 138 n n C17 H172 BCL sing 139 n n C18 C19 BCL sing 140 n n C18 C20 BCL sing 141 n n C18 H18 BCL sing 142 n n C19 H191 BCL sing 143 n n C19 H192 BCL sing 144 n n C19 H193 BCL sing 145 n n C20 H201 BCL sing 146 n n C20 H202 BCL sing 147 n n C20 H203 BCL sing 148 n n # _atom_sites.entry_id 1PYH _atom_sites.fract_transf_matrix[1][1] 0.013151 _atom_sites.fract_transf_matrix[1][2] -0.005713 _atom_sites.fract_transf_matrix[1][3] -0.002667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00916 _atom_sites.fract_transf_matrix[2][3] -0.002546 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 6 BCL A 1 301 301 BCL BCL . JA 6 BCL A 1 302 302 BCL BCL . KA 7 BPH A 1 401 401 BPH BPH . LA 8 FE B 1 500 500 FE FE . MA 6 BCL B 1 303 303 BCL BCL . NA 6 BCL B 1 304 304 BCL BCL . OA 7 BPH B 1 402 402 BPH BPH . PA 6 BCL D 1 2 2 BCL BCL . QA 6 BCL E 1 1 1 BCL BCL . RA 6 BCL F 1 4 4 BCL BCL . SA 6 BCL G 1 3 3 BCL BCL . TA 6 BCL H 1 6 6 BCL BCL . UA 6 BCL I 1 5 5 BCL BCL . VA 6 BCL J 1 8 8 BCL BCL . WA 6 BCL K 1 36 7 BCL BCL . XA 6 BCL L 1 10 10 BCL BCL . YA 6 BCL M 1 36 9 BCL BCL . ZA 6 BCL N 1 11 11 BCL BCL . AB 6 BCL N 1 38 12 BCL BCL . BB 6 BCL P 1 38 13 BCL BCL . CB 6 BCL P 1 39 14 BCL BCL . DB 6 BCL R 1 38 16 BCL BCL . EB 6 BCL S 1 36 15 BCL BCL . FB 6 BCL T 1 38 18 BCL BCL . GB 6 BCL U 1 36 17 BCL BCL . HB 6 BCL V 1 38 19 BCL BCL . IB 6 BCL W 1 36 20 BCL BCL . JB 6 BCL Y 1 36 21 BCL BCL . KB 6 BCL Y 1 37 22 BCL BCL . LB 6 BCL 1 1 38 26 BCL BCL . MB 6 BCL 2 1 36 25 BCL BCL . NB 6 BCL 3 1 38 27 BCL BCL . OB 6 BCL 3 1 39 28 BCL BCL . PB 6 BCL 5 1 38 30 BCL BCL . QB 6 BCL 6 1 36 29 BCL BCL . RB 6 BCL 7 1 38 32 BCL BCL . SB 6 BCL 8 1 36 31 BCL BCL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . JA 6 18.266 -6.106 -0.666 1 198.26 ? MG BCL 302 A 1 HETATM 2 C CHA BCL . . . JA 6 16.46 -7.56 1.93 1 198.26 ? CHA BCL 302 A 1 HETATM 3 C CHB BCL . . . JA 6 15.453 -4.374 -1.365 1 198.26 ? CHB BCL 302 A 1 HETATM 4 C CHC BCL . . . JA 6 20.122 -3.87 -2.428 1 198.26 ? CHC BCL 302 A 1 HETATM 5 C CHD BCL . . . JA 6 21.152 -7.396 0.672 1 198.26 ? CHD BCL 302 A 1 HETATM 6 N NA BCL . . . JA 6 16.268 -6.017 0.188 1 198.26 ? NA BCL 302 A 1 HETATM 7 C C1A BCL . . . JA 6 15.683 -6.841 1.126 1 198.26 ? C1A BCL 302 A 1 HETATM 8 C C2A BCL . . . JA 6 14.17 -6.679 1.233 1 198.26 ? C2A BCL 302 A 1 HETATM 9 C C3A BCL . . . JA 6 13.924 -5.788 0.042 1 198.26 ? C3A BCL 302 A 1 HETATM 10 C C4A BCL . . . JA 6 15.273 -5.348 -0.394 1 198.26 ? C4A BCL 302 A 1 HETATM 11 C CMA BCL . . . JA 6 13.412 -6.755 -1.009 1 198.26 ? CMA BCL 302 A 1 HETATM 12 C CAA BCL . . . JA 6 13.871 -5.816 2.447 1 198.26 ? CAA BCL 302 A 1 HETATM 13 C CBA BCL . . . JA 6 12.413 -5.635 2.89 1 198.26 ? CBA BCL 302 A 1 HETATM 14 C CGA BCL . . . JA 6 11.986 -6.726 3.75 1 198.26 ? CGA BCL 302 A 1 HETATM 15 O O1A BCL . . . JA 6 12.504 -7.816 3.86 1 198.26 ? O1A BCL 302 A 1 HETATM 16 O O2A BCL . . . JA 6 10.995 -6.417 4.58 1 198.26 ? O2A BCL 302 A 1 HETATM 17 N NB BCL . . . JA 6 17.873 -4.326 -1.643 1 198.26 ? NB BCL 302 A 1 HETATM 18 C C1B BCL . . . JA 6 16.601 -3.85 -1.875 1 198.26 ? C1B BCL 302 A 1 HETATM 19 C C2B BCL . . . JA 6 16.71 -2.725 -2.763 1 198.26 ? C2B BCL 302 A 1 HETATM 20 C C3B BCL . . . JA 6 18.01 -2.593 -3.118 1 198.26 ? C3B BCL 302 A 1 HETATM 21 C C4B BCL . . . JA 6 18.765 -3.622 -2.396 1 198.26 ? C4B BCL 302 A 1 HETATM 22 C CMB BCL . . . JA 6 15.528 -1.939 -3.269 1 198.26 ? CMB BCL 302 A 1 HETATM 23 C CAB BCL . . . JA 6 18.666 -1.614 -4.049 1 198.26 ? CAB BCL 302 A 1 HETATM 24 O OBB BCL . . . JA 6 19.793 -1.756 -4.444 1 198.26 ? OBB BCL 302 A 1 HETATM 25 C CBB BCL . . . JA 6 17.992 -0.382 -4.564 1 198.26 ? CBB BCL 302 A 1 HETATM 26 N NC BCL . . . JA 6 20.308 -5.686 -0.842 1 198.26 ? NC BCL 302 A 1 HETATM 27 C C1C BCL . . . JA 6 20.839 -4.76 -1.652 1 198.26 ? C1C BCL 302 A 1 HETATM 28 C C2C BCL . . . JA 6 22.341 -4.796 -1.728 1 198.26 ? C2C BCL 302 A 1 HETATM 29 C C3C BCL . . . JA 6 22.661 -5.812 -0.681 1 198.26 ? C3C BCL 302 A 1 HETATM 30 C C4C BCL . . . JA 6 21.319 -6.359 -0.234 1 198.26 ? C4C BCL 302 A 1 HETATM 31 C CMC BCL . . . JA 6 22.754 -5.301 -3.095 1 198.26 ? CMC BCL 302 A 1 HETATM 32 C CAC BCL . . . JA 6 23.294 -5.079 0.489 1 198.26 ? CAC BCL 302 A 1 HETATM 33 C CBC BCL . . . JA 6 24.663 -4.49 0.176 1 198.26 ? CBC BCL 302 A 1 HETATM 34 N ND BCL . . . JA 6 18.749 -7.241 0.927 1 198.26 ? ND BCL 302 A 1 HETATM 35 C C1D BCL . . . JA 6 19.977 -7.755 1.323 1 198.26 ? C1D BCL 302 A 1 HETATM 36 C C2D BCL . . . JA 6 19.8 -8.563 2.463 1 198.26 ? C2D BCL 302 A 1 HETATM 37 C C3D BCL . . . JA 6 18.464 -8.556 2.727 1 198.26 ? C3D BCL 302 A 1 HETATM 38 C C4D BCL . . . JA 6 17.835 -7.726 1.775 1 198.26 ? C4D BCL 302 A 1 HETATM 39 C CMD BCL . . . JA 6 20.876 -9.306 3.2 1 198.26 ? CMD BCL 302 A 1 HETATM 40 C CAD BCL . . . JA 6 17.49 -8.995 3.68 1 198.26 ? CAD BCL 302 A 1 HETATM 41 O OBD BCL . . . JA 6 17.59 -9.733 4.642 1 198.26 ? OBD BCL 302 A 1 HETATM 42 C CBD BCL . . . JA 6 16.139 -8.41 3.16 1 198.26 ? CBD BCL 302 A 1 HETATM 43 C CGD BCL . . . JA 6 15.057 -9.468 3.167 1 198.26 ? CGD BCL 302 A 1 HETATM 44 O O1D BCL . . . JA 6 14.669 -9.921 2.118 1 198.26 ? O1D BCL 302 A 1 HETATM 45 O O2D BCL . . . JA 6 14.653 -9.874 4.354 1 198.26 ? O2D BCL 302 A 1 HETATM 46 C CED BCL . . . JA 6 13.659 -10.901 4.349 1 198.26 ? CED BCL 302 A 1 HETATM 47 C C1 BCL . . . JA 6 10.57 -7.405 5.509 1 198.26 ? C1 BCL 302 A 1 HETATM 48 C C2 BCL . . . JA 6 10.069 -6.668 6.722 1 198.26 ? C2 BCL 302 A 1 HETATM 49 C C3 BCL . . . JA 6 10.497 -6.878 7.964 1 198.26 ? C3 BCL 302 A 1 HETATM 50 C C4 BCL . . . JA 6 11.522 -7.962 8.314 1 198.26 ? C4 BCL 302 A 1 HETATM 51 C C5 BCL . . . JA 6 9.916 -6.034 9.088 1 198.26 ? C5 BCL 302 A 1 HETATM 52 C C6 BCL . . . JA 6 9.303 -6.875 10.227 1 198.26 ? C6 BCL 302 A 1 HETATM 53 C C7 BCL . . . JA 6 8.582 -5.944 11.181 1 198.26 ? C7 BCL 302 A 1 HETATM 54 C C8 BCL . . . JA 6 8.099 -6.627 12.466 1 198.26 ? C8 BCL 302 A 1 HETATM 55 C C9 BCL . . . JA 6 7.145 -7.759 12.18 1 198.26 ? C9 BCL 302 A 1 HETATM 56 C C10 BCL . . . JA 6 7.439 -5.638 13.411 1 198.26 ? C10 BCL 302 A 1 HETATM 57 C C11 BCL . . . JA 6 8.443 -4.647 13.942 1 198.26 ? C11 BCL 302 A 1 HETATM 58 C C12 BCL . . . JA 6 7.866 -3.824 15.041 1 198.26 ? C12 BCL 302 A 1 HETATM 59 C C13 BCL . . . JA 6 8.901 -2.906 15.667 1 198.26 ? C13 BCL 302 A 1 HETATM 60 C C14 BCL . . . JA 6 9.759 -3.521 16.751 1 198.26 ? C14 BCL 302 A 1 HETATM 61 C C15 BCL . . . JA 6 7.996 -1.776 16.003 1 198.26 ? C15 BCL 302 A 1 HETATM 62 C C16 BCL . . . JA 6 7.924 -1.392 17.397 1 198.26 ? C16 BCL 302 A 1 HETATM 63 C C17 BCL . . . JA 6 8.033 0.112 17.312 1 198.26 ? C17 BCL 302 A 1 HETATM 64 C C18 BCL . . . JA 6 6.828 0.781 17.922 1 198.26 ? C18 BCL 302 A 1 HETATM 65 C C19 BCL . . . JA 6 7.271 2.161 18.353 1 198.26 ? C19 BCL 302 A 1 HETATM 66 C C20 BCL . . . JA 6 6.312 0.059 19.164 1 198.26 ? C20 BCL 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 183 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 53 _model_server_stats.element_count 66 #