data_1PYH # _model_server_result.job_id Wz7m9dfuCFdQwGUzj5MBlQ _model_server_result.datetime_utc '2024-11-12 20:51:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GB","auth_seq_id":36}' # _entry.id 1PYH # _exptl.entry_id 1PYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 34 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.32 _cell.angle_beta 72.69 _cell.angle_gamma 66.52 _cell.entry_id 1PYH _cell.length_a 76.037 _cell.length_b 119.024 _cell.length_c 130.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 IA N N ? 6 JA N N ? 6 MA N N ? 6 NA N N ? 6 PA N N ? 6 QA N N ? 6 RA N N ? 6 SA N N ? 6 TA N N ? 6 UA N N ? 6 VA N N ? 6 WA N N ? 6 XA N N ? 6 YA N N ? 6 ZA N N ? 6 AB N N ? 6 BB N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N ? 6 IB N N ? 6 JB N N ? 6 KB N N ? 6 LB N N ? 6 MB N N ? 6 NB N N ? 6 OB N N ? 6 PB N N ? 6 QB N N ? 6 RB N N ? 6 SB N N # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 1 n n MG NB BCL sing 2 n n MG NC BCL sing 3 n n MG ND BCL sing 4 n n CHA C1A BCL sing 5 n n CHA C4D BCL doub 6 n n CHA CBD BCL sing 7 n n CHB C4A BCL doub 8 n n CHB C1B BCL sing 9 n n CHB HHB BCL sing 10 n n CHC C4B BCL sing 11 n n CHC C1C BCL doub 12 n n CHC HHC BCL sing 13 n n CHD C4C BCL sing 14 n n CHD C1D BCL doub 15 n n CHD HHD BCL sing 16 n n NA C1A BCL doub 17 n n NA C4A BCL sing 18 n n C1A C2A BCL sing 19 n n C2A C3A BCL sing 20 n n C2A CAA BCL sing 21 n n C2A H2A BCL sing 22 n n C3A C4A BCL sing 23 n n C3A CMA BCL sing 24 n n C3A H3A BCL sing 25 n n CMA HMA1 BCL sing 26 n n CMA HMA2 BCL sing 27 n n CMA HMA3 BCL sing 28 n n CAA CBA BCL sing 29 n n CAA HAA1 BCL sing 30 n n CAA HAA2 BCL sing 31 n n CBA CGA BCL sing 32 n n CBA HBA1 BCL sing 33 n n CBA HBA2 BCL sing 34 n n CGA O1A BCL doub 35 n n CGA O2A BCL sing 36 n n O2A C1 BCL sing 37 n n NB C1B BCL sing 38 n y NB C4B BCL sing 39 n y C1B C2B BCL doub 40 n y C2B C3B BCL sing 41 n y C2B CMB BCL sing 42 n n C3B C4B BCL doub 43 n y C3B CAB BCL sing 44 n n CMB HMB1 BCL sing 45 n n CMB HMB2 BCL sing 46 n n CMB HMB3 BCL sing 47 n n CAB OBB BCL doub 48 n n CAB CBB BCL sing 49 n n CBB HBB1 BCL sing 50 n n CBB HBB2 BCL sing 51 n n CBB HBB3 BCL sing 52 n n NC C1C BCL sing 53 n n NC C4C BCL doub 54 n n C1C C2C BCL sing 55 n n C2C C3C BCL sing 56 n n C2C CMC BCL sing 57 n n C2C H2C BCL sing 58 n n C3C C4C BCL sing 59 n n C3C CAC BCL sing 60 n n C3C H3C BCL sing 61 n n CMC HMC1 BCL sing 62 n n CMC HMC2 BCL sing 63 n n CMC HMC3 BCL sing 64 n n CAC CBC BCL sing 65 n n CAC HAC1 BCL sing 66 n n CAC HAC2 BCL sing 67 n n CBC HBC1 BCL sing 68 n n CBC HBC2 BCL sing 69 n n CBC HBC3 BCL sing 70 n n ND C1D BCL sing 71 n n ND C4D BCL sing 72 n n C1D C2D BCL sing 73 n n C2D C3D BCL doub 74 n n C2D CMD BCL sing 75 n n C3D C4D BCL sing 76 n n C3D CAD BCL sing 77 n n CMD HMD1 BCL sing 78 n n CMD HMD2 BCL sing 79 n n CMD HMD3 BCL sing 80 n n CAD OBD BCL doub 81 n n CAD CBD BCL sing 82 n n CBD CGD BCL sing 83 n n CBD HBD BCL sing 84 n n CGD O1D BCL doub 85 n n CGD O2D BCL sing 86 n n O2D CED BCL sing 87 n n CED HED1 BCL sing 88 n n CED HED2 BCL sing 89 n n CED HED3 BCL sing 90 n n C1 C2 BCL sing 91 n n C1 H11 BCL sing 92 n n C1 H12 BCL sing 93 n n C2 C3 BCL doub 94 e n C2 H2 BCL sing 95 n n C3 C4 BCL sing 96 n n C3 C5 BCL sing 97 n n C4 H41 BCL sing 98 n n C4 H42 BCL sing 99 n n C4 H43 BCL sing 100 n n C5 C6 BCL sing 101 n n C5 H51 BCL sing 102 n n C5 H52 BCL sing 103 n n C6 C7 BCL sing 104 n n C6 H61 BCL sing 105 n n C6 H62 BCL sing 106 n n C7 C8 BCL sing 107 n n C7 H71 BCL sing 108 n n C7 H72 BCL sing 109 n n C8 C9 BCL sing 110 n n C8 C10 BCL sing 111 n n C8 H8 BCL sing 112 n n C9 H91 BCL sing 113 n n C9 H92 BCL sing 114 n n C9 H93 BCL sing 115 n n C10 C11 BCL sing 116 n n C10 H101 BCL sing 117 n n C10 H102 BCL sing 118 n n C11 C12 BCL sing 119 n n C11 H111 BCL sing 120 n n C11 H112 BCL sing 121 n n C12 C13 BCL sing 122 n n C12 H121 BCL sing 123 n n C12 H122 BCL sing 124 n n C13 C14 BCL sing 125 n n C13 C15 BCL sing 126 n n C13 H13 BCL sing 127 n n C14 H141 BCL sing 128 n n C14 H142 BCL sing 129 n n C14 H143 BCL sing 130 n n C15 C16 BCL sing 131 n n C15 H151 BCL sing 132 n n C15 H152 BCL sing 133 n n C16 C17 BCL sing 134 n n C16 H161 BCL sing 135 n n C16 H162 BCL sing 136 n n C17 C18 BCL sing 137 n n C17 H171 BCL sing 138 n n C17 H172 BCL sing 139 n n C18 C19 BCL sing 140 n n C18 C20 BCL sing 141 n n C18 H18 BCL sing 142 n n C19 H191 BCL sing 143 n n C19 H192 BCL sing 144 n n C19 H193 BCL sing 145 n n C20 H201 BCL sing 146 n n C20 H202 BCL sing 147 n n C20 H203 BCL sing 148 n n # _atom_sites.entry_id 1PYH _atom_sites.fract_transf_matrix[1][1] 0.013151 _atom_sites.fract_transf_matrix[1][2] -0.005713 _atom_sites.fract_transf_matrix[1][3] -0.002667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00916 _atom_sites.fract_transf_matrix[2][3] -0.002546 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 6 BCL A 1 301 301 BCL BCL . JA 6 BCL A 1 302 302 BCL BCL . KA 7 BPH A 1 401 401 BPH BPH . LA 8 FE B 1 500 500 FE FE . MA 6 BCL B 1 303 303 BCL BCL . NA 6 BCL B 1 304 304 BCL BCL . OA 7 BPH B 1 402 402 BPH BPH . PA 6 BCL D 1 2 2 BCL BCL . QA 6 BCL E 1 1 1 BCL BCL . RA 6 BCL F 1 4 4 BCL BCL . SA 6 BCL G 1 3 3 BCL BCL . TA 6 BCL H 1 6 6 BCL BCL . UA 6 BCL I 1 5 5 BCL BCL . VA 6 BCL J 1 8 8 BCL BCL . WA 6 BCL K 1 36 7 BCL BCL . XA 6 BCL L 1 10 10 BCL BCL . YA 6 BCL M 1 36 9 BCL BCL . ZA 6 BCL N 1 11 11 BCL BCL . AB 6 BCL N 1 38 12 BCL BCL . BB 6 BCL P 1 38 13 BCL BCL . CB 6 BCL P 1 39 14 BCL BCL . DB 6 BCL R 1 38 16 BCL BCL . EB 6 BCL S 1 36 15 BCL BCL . FB 6 BCL T 1 38 18 BCL BCL . GB 6 BCL U 1 36 17 BCL BCL . HB 6 BCL V 1 38 19 BCL BCL . IB 6 BCL W 1 36 20 BCL BCL . JB 6 BCL Y 1 36 21 BCL BCL . KB 6 BCL Y 1 37 22 BCL BCL . LB 6 BCL 1 1 38 26 BCL BCL . MB 6 BCL 2 1 36 25 BCL BCL . NB 6 BCL 3 1 38 27 BCL BCL . OB 6 BCL 3 1 39 28 BCL BCL . PB 6 BCL 5 1 38 30 BCL BCL . QB 6 BCL 6 1 36 29 BCL BCL . RB 6 BCL 7 1 38 32 BCL BCL . SB 6 BCL 8 1 36 31 BCL BCL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . GB 6 13.688 -6.741 -48.754 1 198.26 ? MG BCL 36 U 1 HETATM 2 C CHA BCL . . . GB 6 11.043 -8.687 -49.911 1 198.26 ? CHA BCL 36 U 1 HETATM 3 C CHB BCL . . . GB 6 11.49 -4.133 -48.163 1 198.26 ? CHB BCL 36 U 1 HETATM 4 C CHC BCL . . . GB 6 16.206 -4.799 -47.633 1 198.26 ? CHC BCL 36 U 1 HETATM 5 C CHD BCL . . . GB 6 15.917 -9.214 -49.878 1 198.26 ? CHD BCL 36 U 1 HETATM 6 N NA BCL . . . GB 6 11.649 -6.507 -49.113 1 198.26 ? NA BCL 36 U 1 HETATM 7 C C1A BCL . . . GB 6 10.729 -7.428 -49.574 1 198.26 ? C1A BCL 36 U 1 HETATM 8 C C2A BCL . . . GB 6 9.277 -6.945 -49.488 1 198.26 ? C2A BCL 36 U 1 HETATM 9 C C3A BCL . . . GB 6 9.431 -5.544 -48.996 1 198.26 ? C3A BCL 36 U 1 HETATM 10 C C4A BCL . . . GB 6 10.958 -5.362 -48.735 1 198.26 ? C4A BCL 36 U 1 HETATM 11 C CMA BCL . . . GB 6 9.148 -4.618 -50.258 1 198.26 ? CMA BCL 36 U 1 HETATM 12 C CAA BCL . . . GB 6 8.3 -7.877 -48.749 1 198.26 ? CAA BCL 36 U 1 HETATM 13 C CBA BCL . . . GB 6 7.46 -8.629 -49.818 1 198.26 ? CBA BCL 36 U 1 HETATM 14 C CGA BCL . . . GB 6 6.067 -9.113 -49.508 1 198.26 ? CGA BCL 36 U 1 HETATM 15 O O1A BCL . . . GB 6 5.126 -8.404 -49.355 1 198.26 ? O1A BCL 36 U 1 HETATM 16 O O2A BCL . . . GB 6 5.963 -10.312 -49.386 1 198.26 ? O2A BCL 36 U 1 HETATM 17 N NB BCL . . . GB 6 13.888 -4.979 -47.865 1 198.26 ? NB BCL 36 U 1 HETATM 18 C C1B BCL . . . GB 6 12.861 -3.895 -47.8 1 198.26 ? C1B BCL 36 U 1 HETATM 19 C C2B BCL . . . GB 6 13.328 -2.852 -47.112 1 198.26 ? C2B BCL 36 U 1 HETATM 20 C C3B BCL . . . GB 6 14.783 -3.047 -46.961 1 198.26 ? C3B BCL 36 U 1 HETATM 21 C C4B BCL . . . GB 6 15.002 -4.195 -47.543 1 198.26 ? C4B BCL 36 U 1 HETATM 22 C CMB BCL . . . GB 6 12.336 -1.695 -46.482 1 198.26 ? CMB BCL 36 U 1 HETATM 23 C CAB BCL . . . GB 6 15.697 -2.149 -46.34 1 198.26 ? CAB BCL 36 U 1 HETATM 24 O OBB BCL . . . GB 6 15.176 -1.06 -45.465 1 198.26 ? OBB BCL 36 U 1 HETATM 25 C CBB BCL . . . GB 6 16.896 -2.099 -46.745 1 198.26 ? CBB BCL 36 U 1 HETATM 26 N NC BCL . . . GB 6 15.761 -6.924 -48.775 1 198.26 ? NC BCL 36 U 1 HETATM 27 C C1C BCL . . . GB 6 16.649 -6.041 -48.206 1 198.26 ? C1C BCL 36 U 1 HETATM 28 C C2C BCL . . . GB 6 18.129 -6.623 -48.233 1 198.26 ? C2C BCL 36 U 1 HETATM 29 C C3C BCL . . . GB 6 18.008 -7.946 -48.94 1 198.26 ? C3C BCL 36 U 1 HETATM 30 C C4C BCL . . . GB 6 16.519 -8.017 -49.275 1 198.26 ? C4C BCL 36 U 1 HETATM 31 C CMC BCL . . . GB 6 19.153 -5.667 -48.904 1 198.26 ? CMC BCL 36 U 1 HETATM 32 C CAC BCL . . . GB 6 18.684 -9.054 -48.283 1 198.26 ? CAC BCL 36 U 1 HETATM 33 C CBC BCL . . . GB 6 18.103 -9.728 -46.96 1 198.26 ? CBC BCL 36 U 1 HETATM 34 N ND BCL . . . GB 6 13.455 -8.517 -49.773 1 198.26 ? ND BCL 36 U 1 HETATM 35 C C1D BCL . . . GB 6 14.529 -9.427 -50.08 1 198.26 ? C1D BCL 36 U 1 HETATM 36 C C2D BCL . . . GB 6 14.049 -10.606 -50.573 1 198.26 ? C2D BCL 36 U 1 HETATM 37 C C3D BCL . . . GB 6 12.633 -10.392 -50.609 1 198.26 ? C3D BCL 36 U 1 HETATM 38 C C4D BCL . . . GB 6 12.323 -9.171 -50.11 1 198.26 ? C4D BCL 36 U 1 HETATM 39 C CMD BCL . . . GB 6 14.976 -11.732 -50.987 1 198.26 ? CMD BCL 36 U 1 HETATM 40 C CAD BCL . . . GB 6 11.234 -10.837 -50.816 1 198.26 ? CAD BCL 36 U 1 HETATM 41 O OBD BCL . . . GB 6 11.016 -11.891 -51.367 1 198.26 ? OBD BCL 36 U 1 HETATM 42 C CBD BCL . . . GB 6 10.165 -9.885 -50.39 1 198.26 ? CBD BCL 36 U 1 HETATM 43 C CGD BCL . . . GB 6 9.286 -9.557 -51.593 1 198.26 ? CGD BCL 36 U 1 HETATM 44 O O1D BCL . . . GB 6 9.749 -8.671 -52.461 1 198.26 ? O1D BCL 36 U 1 HETATM 45 O O2D BCL . . . GB 6 8.189 -10.056 -51.738 1 198.26 ? O2D BCL 36 U 1 HETATM 46 C CED BCL . . . GB 6 7.394 -9.681 -52.839 1 198.26 ? CED BCL 36 U 1 HETATM 47 C C1 BCL . . . GB 6 4.483 -10.693 -49.083 1 198.26 ? C1 BCL 36 U 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #