data_1PYH
#
_model_server_result.job_id            kT7Z2M4O6shEE5rbDogkdQ 
_model_server_result.datetime_utc      '2025-03-06 02:23:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JB","auth_seq_id":36}' 
#
_entry.id    1PYH 
#
_exptl.entry_id    1PYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              911.504 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BACTERIOCHLOROPHYLL A' 
_entity.pdbx_number_of_molecules    34 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         69.32 
_cell.angle_beta          72.69 
_cell.angle_gamma         66.52 
_cell.entry_id            1PYH 
_cell.length_a            76.037 
_cell.length_b            119.024 
_cell.length_c            130.432 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    34-meric 
_pdbx_struct_assembly.oligomeric_count      34 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 IA N N 
? 6 JA N N 
? 6 MA N N 
? 6 NA N N 
? 6 PA N N 
? 6 QA N N 
? 6 RA N N 
? 6 SA N N 
? 6 TA N N 
? 6 UA N N 
? 6 VA N N 
? 6 WA N N 
? 6 XA N N 
? 6 YA N N 
? 6 ZA N N 
? 6 AB N N 
? 6 BB N N 
? 6 CB N N 
? 6 DB N N 
? 6 EB N N 
? 6 FB N N 
? 6 GB N N 
? 6 HB N N 
? 6 IB N N 
? 6 JB N N 
? 6 KB N N 
? 6 LB N N 
? 6 MB N N 
? 6 NB N N 
? 6 OB N N 
? 6 PB N N 
? 6 QB N N 
? 6 RB N N 
? 6 SB N N 
#
_chem_comp.formula           'C55 H74 Mg N4 O6' 
_chem_comp.formula_weight    911.504 
_chem_comp.id                BCL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BACTERIOCHLOROPHYLL A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MG NA BCL sing 1 n n 
MG NB BCL sing 2 n n 
MG NC BCL sing 3 n n 
MG ND BCL sing 4 n n 
CHA C1A BCL sing 5 n n 
CHA C4D BCL doub 6 n n 
CHA CBD BCL sing 7 n n 
CHB C4A BCL doub 8 n n 
CHB C1B BCL sing 9 n n 
CHB HHB BCL sing 10 n n 
CHC C4B BCL sing 11 n n 
CHC C1C BCL doub 12 n n 
CHC HHC BCL sing 13 n n 
CHD C4C BCL sing 14 n n 
CHD C1D BCL doub 15 n n 
CHD HHD BCL sing 16 n n 
NA C1A BCL doub 17 n n 
NA C4A BCL sing 18 n n 
C1A C2A BCL sing 19 n n 
C2A C3A BCL sing 20 n n 
C2A CAA BCL sing 21 n n 
C2A H2A BCL sing 22 n n 
C3A C4A BCL sing 23 n n 
C3A CMA BCL sing 24 n n 
C3A H3A BCL sing 25 n n 
CMA HMA1 BCL sing 26 n n 
CMA HMA2 BCL sing 27 n n 
CMA HMA3 BCL sing 28 n n 
CAA CBA BCL sing 29 n n 
CAA HAA1 BCL sing 30 n n 
CAA HAA2 BCL sing 31 n n 
CBA CGA BCL sing 32 n n 
CBA HBA1 BCL sing 33 n n 
CBA HBA2 BCL sing 34 n n 
CGA O1A BCL doub 35 n n 
CGA O2A BCL sing 36 n n 
O2A C1 BCL sing 37 n n 
NB C1B BCL sing 38 n y 
NB C4B BCL sing 39 n y 
C1B C2B BCL doub 40 n y 
C2B C3B BCL sing 41 n y 
C2B CMB BCL sing 42 n n 
C3B C4B BCL doub 43 n y 
C3B CAB BCL sing 44 n n 
CMB HMB1 BCL sing 45 n n 
CMB HMB2 BCL sing 46 n n 
CMB HMB3 BCL sing 47 n n 
CAB OBB BCL doub 48 n n 
CAB CBB BCL sing 49 n n 
CBB HBB1 BCL sing 50 n n 
CBB HBB2 BCL sing 51 n n 
CBB HBB3 BCL sing 52 n n 
NC C1C BCL sing 53 n n 
NC C4C BCL doub 54 n n 
C1C C2C BCL sing 55 n n 
C2C C3C BCL sing 56 n n 
C2C CMC BCL sing 57 n n 
C2C H2C BCL sing 58 n n 
C3C C4C BCL sing 59 n n 
C3C CAC BCL sing 60 n n 
C3C H3C BCL sing 61 n n 
CMC HMC1 BCL sing 62 n n 
CMC HMC2 BCL sing 63 n n 
CMC HMC3 BCL sing 64 n n 
CAC CBC BCL sing 65 n n 
CAC HAC1 BCL sing 66 n n 
CAC HAC2 BCL sing 67 n n 
CBC HBC1 BCL sing 68 n n 
CBC HBC2 BCL sing 69 n n 
CBC HBC3 BCL sing 70 n n 
ND C1D BCL sing 71 n n 
ND C4D BCL sing 72 n n 
C1D C2D BCL sing 73 n n 
C2D C3D BCL doub 74 n n 
C2D CMD BCL sing 75 n n 
C3D C4D BCL sing 76 n n 
C3D CAD BCL sing 77 n n 
CMD HMD1 BCL sing 78 n n 
CMD HMD2 BCL sing 79 n n 
CMD HMD3 BCL sing 80 n n 
CAD OBD BCL doub 81 n n 
CAD CBD BCL sing 82 n n 
CBD CGD BCL sing 83 n n 
CBD HBD BCL sing 84 n n 
CGD O1D BCL doub 85 n n 
CGD O2D BCL sing 86 n n 
O2D CED BCL sing 87 n n 
CED HED1 BCL sing 88 n n 
CED HED2 BCL sing 89 n n 
CED HED3 BCL sing 90 n n 
C1 C2 BCL sing 91 n n 
C1 H11 BCL sing 92 n n 
C1 H12 BCL sing 93 n n 
C2 C3 BCL doub 94 e n 
C2 H2 BCL sing 95 n n 
C3 C4 BCL sing 96 n n 
C3 C5 BCL sing 97 n n 
C4 H41 BCL sing 98 n n 
C4 H42 BCL sing 99 n n 
C4 H43 BCL sing 100 n n 
C5 C6 BCL sing 101 n n 
C5 H51 BCL sing 102 n n 
C5 H52 BCL sing 103 n n 
C6 C7 BCL sing 104 n n 
C6 H61 BCL sing 105 n n 
C6 H62 BCL sing 106 n n 
C7 C8 BCL sing 107 n n 
C7 H71 BCL sing 108 n n 
C7 H72 BCL sing 109 n n 
C8 C9 BCL sing 110 n n 
C8 C10 BCL sing 111 n n 
C8 H8 BCL sing 112 n n 
C9 H91 BCL sing 113 n n 
C9 H92 BCL sing 114 n n 
C9 H93 BCL sing 115 n n 
C10 C11 BCL sing 116 n n 
C10 H101 BCL sing 117 n n 
C10 H102 BCL sing 118 n n 
C11 C12 BCL sing 119 n n 
C11 H111 BCL sing 120 n n 
C11 H112 BCL sing 121 n n 
C12 C13 BCL sing 122 n n 
C12 H121 BCL sing 123 n n 
C12 H122 BCL sing 124 n n 
C13 C14 BCL sing 125 n n 
C13 C15 BCL sing 126 n n 
C13 H13 BCL sing 127 n n 
C14 H141 BCL sing 128 n n 
C14 H142 BCL sing 129 n n 
C14 H143 BCL sing 130 n n 
C15 C16 BCL sing 131 n n 
C15 H151 BCL sing 132 n n 
C15 H152 BCL sing 133 n n 
C16 C17 BCL sing 134 n n 
C16 H161 BCL sing 135 n n 
C16 H162 BCL sing 136 n n 
C17 C18 BCL sing 137 n n 
C17 H171 BCL sing 138 n n 
C17 H172 BCL sing 139 n n 
C18 C19 BCL sing 140 n n 
C18 C20 BCL sing 141 n n 
C18 H18 BCL sing 142 n n 
C19 H191 BCL sing 143 n n 
C19 H192 BCL sing 144 n n 
C19 H193 BCL sing 145 n n 
C20 H201 BCL sing 146 n n 
C20 H202 BCL sing 147 n n 
C20 H203 BCL sing 148 n n 
#
_atom_sites.entry_id                     1PYH 
_atom_sites.fract_transf_matrix[1][1]    0.013151 
_atom_sites.fract_transf_matrix[1][2]    -0.005713 
_atom_sites.fract_transf_matrix[1][3]    -0.002667 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00916 
_atom_sites.fract_transf_matrix[2][3]    -0.002546 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IA 6 BCL A 1 301 301 BCL BCL . 
JA 6 BCL A 1 302 302 BCL BCL . 
KA 7 BPH A 1 401 401 BPH BPH . 
LA 8 FE B 1 500 500 FE FE . 
MA 6 BCL B 1 303 303 BCL BCL . 
NA 6 BCL B 1 304 304 BCL BCL . 
OA 7 BPH B 1 402 402 BPH BPH . 
PA 6 BCL D 1 2 2 BCL BCL . 
QA 6 BCL E 1 1 1 BCL BCL . 
RA 6 BCL F 1 4 4 BCL BCL . 
SA 6 BCL G 1 3 3 BCL BCL . 
TA 6 BCL H 1 6 6 BCL BCL . 
UA 6 BCL I 1 5 5 BCL BCL . 
VA 6 BCL J 1 8 8 BCL BCL . 
WA 6 BCL K 1 36 7 BCL BCL . 
XA 6 BCL L 1 10 10 BCL BCL . 
YA 6 BCL M 1 36 9 BCL BCL . 
ZA 6 BCL N 1 11 11 BCL BCL . 
AB 6 BCL N 1 38 12 BCL BCL . 
BB 6 BCL P 1 38 13 BCL BCL . 
CB 6 BCL P 1 39 14 BCL BCL . 
DB 6 BCL R 1 38 16 BCL BCL . 
EB 6 BCL S 1 36 15 BCL BCL . 
FB 6 BCL T 1 38 18 BCL BCL . 
GB 6 BCL U 1 36 17 BCL BCL . 
HB 6 BCL V 1 38 19 BCL BCL . 
IB 6 BCL W 1 36 20 BCL BCL . 
JB 6 BCL Y 1 36 21 BCL BCL . 
KB 6 BCL Y 1 37 22 BCL BCL . 
LB 6 BCL 1 1 38 26 BCL BCL . 
MB 6 BCL 2 1 36 25 BCL BCL . 
NB 6 BCL 3 1 38 27 BCL BCL . 
OB 6 BCL 3 1 39 28 BCL BCL . 
PB 6 BCL 5 1 38 30 BCL BCL . 
QB 6 BCL 6 1 36 29 BCL BCL . 
RB 6 BCL 7 1 38 32 BCL BCL . 
SB 6 BCL 8 1 36 31 BCL BCL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MG MG BCL . . . JB 6 8.242 -35.043 -28.994 1 198.26 ? MG BCL 36 Y 1 
HETATM 2 C CHA BCL . . . JB 6 5.349 -36.64 -27.862 1 198.26 ? CHA BCL 36 Y 1 
HETATM 3 C CHB BCL . . . JB 6 6.378 -32.235 -29.768 1 198.26 ? CHB BCL 36 Y 1 
HETATM 4 C CHC BCL . . . JB 6 11.002 -33.448 -30.109 1 198.26 ? CHC BCL 36 Y 1 
HETATM 5 C CHD BCL . . . JB 6 9.953 -38.098 -28.683 1 198.26 ? CHD BCL 36 Y 1 
HETATM 6 N NA BCL . . . JB 6 6.195 -34.64 -28.898 1 198.26 ? NA BCL 36 Y 1 
HETATM 7 C C1A BCL . . . JB 6 5.172 -35.413 -28.382 1 198.26 ? C1A BCL 36 Y 1 
HETATM 8 C C2A BCL . . . JB 6 3.828 -34.677 -28.289 1 198.26 ? C2A BCL 36 Y 1 
HETATM 9 C C3A BCL . . . JB 6 4.146 -33.355 -28.911 1 198.26 ? C3A BCL 36 Y 1 
HETATM 10 C C4A BCL . . . JB 6 5.678 -33.392 -29.226 1 198.26 ? C4A BCL 36 Y 1 
HETATM 11 C CMA BCL . . . JB 6 3.46 -33.397 -30.34 1 198.26 ? CMA BCL 36 Y 1 
HETATM 12 C CAA BCL . . . JB 6 3.153 -34.688 -26.91 1 198.26 ? CAA BCL 36 Y 1 
HETATM 13 C CBA BCL . . . JB 6 1.803 -35.448 -27.048 1 198.26 ? CBA BCL 36 Y 1 
HETATM 14 C CGA BCL . . . JB 6 0.756 -35.369 -25.976 1 198.26 ? CGA BCL 36 Y 1 
HETATM 15 O O1A BCL . . . JB 6 0.961 -34.739 -25.015 1 198.26 ? O1A BCL 36 Y 1 
HETATM 16 O O2A BCL . . . JB 6 -0.413 -36.021 -26.261 1 198.26 ? O2A BCL 36 Y 1 
HETATM 17 N NB BCL . . . JB 6 8.736 -33.211 -29.585 1 198.26 ? NB BCL 36 Y 1 
HETATM 18 C C1B BCL . . . JB 6 7.793 -32.134 -30.01 1 198.26 ? C1B BCL 36 Y 1 
HETATM 19 C C2B BCL . . . JB 6 8.47 -31.025 -30.332 1 198.26 ? C2B BCL 36 Y 1 
HETATM 20 C C3B BCL . . . JB 6 9.891 -31.395 -30.454 1 198.26 ? C3B BCL 36 Y 1 
HETATM 21 C C4B BCL . . . JB 6 9.899 -32.672 -30.151 1 198.26 ? C4B BCL 36 Y 1 
HETATM 22 C CMB BCL . . . JB 6 7.747 -29.543 -30.416 1 198.26 ? CMB BCL 36 Y 1 
HETATM 23 C CAB BCL . . . JB 6 10.968 -30.542 -30.84 1 198.26 ? CAB BCL 36 Y 1 
HETATM 24 O OBB BCL . . . JB 6 10.774 -29.056 -30.825 1 198.26 ? OBB BCL 36 Y 1 
HETATM 25 C CBB BCL . . . JB 6 11.962 -31.026 -31.448 1 198.26 ? CBB BCL 36 Y 1 
HETATM 26 N NC BCL . . . JB 6 10.186 -35.657 -29.389 1 198.26 ? NC BCL 36 Y 1 
HETATM 27 C C1C BCL . . . JB 6 11.223 -34.837 -29.798 1 198.26 ? C1C BCL 36 Y 1 
HETATM 28 C C2C BCL . . . JB 6 12.605 -35.618 -29.79 1 198.26 ? C2C BCL 36 Y 1 
HETATM 29 C C3C BCL . . . JB 6 12.245 -37.024 -29.379 1 198.26 ? C3C BCL 36 Y 1 
HETATM 30 C C4C BCL . . . JB 6 10.727 -36.955 -29.197 1 198.26 ? C4C BCL 36 Y 1 
HETATM 31 C CMC BCL . . . JB 6 13.351 -35.558 -31.144 1 198.26 ? CMC BCL 36 Y 1 
HETATM 32 C CAC BCL . . . JB 6 13.103 -37.588 -28.348 1 198.26 ? CAC BCL 36 Y 1 
HETATM 33 C CBC BCL . . . JB 6 12.991 -37.125 -26.829 1 198.26 ? CBC BCL 36 Y 1 
HETATM 34 N ND BCL . . . JB 6 7.668 -36.962 -28.468 1 198.26 ? ND BCL 36 Y 1 
HETATM 35 C C1D BCL . . . JB 6 8.576 -38.072 -28.338 1 198.26 ? C1D BCL 36 Y 1 
HETATM 36 C C2D BCL . . . JB 6 7.951 -39.156 -27.785 1 198.26 ? C2D BCL 36 Y 1 
HETATM 37 C C3D BCL . . . JB 6 6.604 -38.705 -27.608 1 198.26 ? C3D BCL 36 Y 1 
HETATM 38 C C4D BCL . . . JB 6 6.485 -37.41 -27.992 1 198.26 ? C4D BCL 36 Y 1 
HETATM 39 C CMD BCL . . . JB 6 8.68 -40.465 -27.553 1 198.26 ? CMD BCL 36 Y 1 
HETATM 40 C CAD BCL . . . JB 6 5.213 -38.856 -27.114 1 198.26 ? CAD BCL 36 Y 1 
HETATM 41 O OBD BCL . . . JB 6 4.816 -39.94 -26.743 1 198.26 ? OBD BCL 36 Y 1 
HETATM 42 C CBD BCL . . . JB 6 4.353 -37.637 -27.184 1 198.26 ? CBD BCL 36 Y 1 
HETATM 43 C CGD BCL . . . JB 6 3.121 -37.954 -28.03 1 198.26 ? CGD BCL 36 Y 1 
HETATM 44 O O1D BCL . . . JB 6 3.291 -38.056 -29.334 1 198.26 ? O1D BCL 36 Y 1 
HETATM 45 O O2D BCL . . . JB 6 2.014 -38.083 -27.54 1 198.26 ? O2D BCL 36 Y 1 
HETATM 46 C CED BCL . . . JB 6 1.92 -37.891 -26.158 1 198.26 ? CED BCL 36 Y 1 
HETATM 47 C C1 BCL . . . JB 6 -1.45 -35.964 -25.367 1 198.26 ? C1 BCL 36 Y 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#