data_1PYH
#
_model_server_result.job_id            OoKzuQbFgmPAFHbxVOvbww 
_model_server_result.datetime_utc      '2024-11-12 20:48:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":402}' 
#
_entry.id    1PYH 
#
_exptl.entry_id    1PYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              889.215 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BACTERIOPHEOPHYTIN A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         69.32 
_cell.angle_beta          72.69 
_cell.angle_gamma         66.52 
_cell.entry_id            1PYH 
_cell.length_a            76.037 
_cell.length_b            119.024 
_cell.length_c            130.432 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    34-meric 
_pdbx_struct_assembly.oligomeric_count      34 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 KA N N 
? 7 OA N N 
#
_chem_comp.formula           'C55 H76 N4 O6' 
_chem_comp.formula_weight    889.215 
_chem_comp.id                BPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BACTERIOPHEOPHYTIN A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1D CGD BPH doub 149 n n 
CGD O2D BPH sing 150 n n 
CGD CBD BPH sing 151 n n 
O2D CED BPH sing 152 n n 
CBD CHA BPH sing 153 n n 
CBD CAD BPH sing 154 n n 
CHA C4D BPH doub 155 n y 
CHA C1A BPH sing 156 n y 
C4D C3D BPH sing 157 n y 
C4D ND BPH sing 158 n y 
C3D CAD BPH sing 159 n n 
C3D C2D BPH doub 160 n y 
CAD OBD BPH doub 161 n n 
C2D CMD BPH sing 162 n n 
C2D C1D BPH sing 163 n y 
C1D ND BPH sing 164 n y 
C1D CHD BPH doub 165 n y 
CHD C4C BPH sing 166 n y 
C4C C3C BPH sing 167 n n 
C4C NC BPH doub 168 n y 
C3C CAC BPH sing 169 n n 
C3C C2C BPH sing 170 n n 
CAC CBC BPH sing 171 n n 
C2C CMC BPH sing 172 n n 
C2C C1C BPH sing 173 n n 
C1C NC BPH sing 174 n y 
C1C CHC BPH doub 175 n y 
CHC C4B BPH sing 176 n y 
C4B C3B BPH doub 177 n y 
C4B NB BPH sing 178 n y 
C3B CAB BPH sing 179 n n 
C3B C2B BPH sing 180 n y 
CAB CBB BPH sing 181 n n 
CAB OBB BPH doub 182 n n 
C2B CMB BPH sing 183 n n 
C2B C1B BPH doub 184 n y 
C1B NB BPH sing 185 n y 
C1B CHB BPH sing 186 n y 
CHB C4A BPH doub 187 n y 
C4A C3A BPH sing 188 n n 
C4A NA BPH sing 189 n y 
C3A CMA BPH sing 190 n n 
C3A C2A BPH sing 191 n n 
C2A C1A BPH sing 192 n n 
C2A CAA BPH sing 193 n n 
C1A NA BPH doub 194 n y 
CAA CBA BPH sing 195 n n 
CBA CGA BPH sing 196 n n 
CGA O1A BPH doub 197 n n 
CGA O2A BPH sing 198 n n 
O2A C1 BPH sing 199 n n 
C1 C2 BPH sing 200 n n 
C2 C3 BPH doub 201 e n 
C3 C4 BPH sing 202 n n 
C3 C5 BPH sing 203 n n 
C5 C6 BPH sing 204 n n 
C6 C7 BPH sing 205 n n 
C7 C8 BPH sing 206 n n 
C8 C9 BPH sing 207 n n 
C8 C10 BPH sing 208 n n 
C10 C11 BPH sing 209 n n 
C11 C12 BPH sing 210 n n 
C12 C13 BPH sing 211 n n 
C13 C14 BPH sing 212 n n 
C13 C15 BPH sing 213 n n 
C15 C16 BPH sing 214 n n 
C16 C17 BPH sing 215 n n 
C17 C18 BPH sing 216 n n 
C18 C19 BPH sing 217 n n 
C18 C20 BPH sing 218 n n 
CED HED1 BPH sing 219 n n 
CED HED2 BPH sing 220 n n 
CED HED3 BPH sing 221 n n 
CBD HBD BPH sing 222 n n 
CMD HMD1 BPH sing 223 n n 
CMD HMD2 BPH sing 224 n n 
CMD HMD3 BPH sing 225 n n 
ND HD BPH sing 226 n n 
CHD HHD BPH sing 227 n n 
C3C H3C BPH sing 228 n n 
CAC HAC1 BPH sing 229 n n 
CAC HAC2 BPH sing 230 n n 
CBC HBC1 BPH sing 231 n n 
CBC HBC2 BPH sing 232 n n 
CBC HBC3 BPH sing 233 n n 
C2C H2C BPH sing 234 n n 
CMC HMC1 BPH sing 235 n n 
CMC HMC2 BPH sing 236 n n 
CMC HMC3 BPH sing 237 n n 
CHC HHC BPH sing 238 n n 
CBB HBB1 BPH sing 239 n n 
CBB HBB2 BPH sing 240 n n 
CBB HBB3 BPH sing 241 n n 
CMB HMB1 BPH sing 242 n n 
CMB HMB2 BPH sing 243 n n 
CMB HMB3 BPH sing 244 n n 
NB HB BPH sing 245 n n 
CHB HHB BPH sing 246 n n 
C3A H3A BPH sing 247 n n 
CMA HMA1 BPH sing 248 n n 
CMA HMA2 BPH sing 249 n n 
CMA HMA3 BPH sing 250 n n 
C2A H2A BPH sing 251 n n 
CAA HAA1 BPH sing 252 n n 
CAA HAA2 BPH sing 253 n n 
CBA HBA1 BPH sing 254 n n 
CBA HBA2 BPH sing 255 n n 
C1 H1C1 BPH sing 256 n n 
C1 H1C2 BPH sing 257 n n 
C2 H2 BPH sing 258 n n 
C4 H4C1 BPH sing 259 n n 
C4 H4C2 BPH sing 260 n n 
C4 H4C3 BPH sing 261 n n 
C5 H5C1 BPH sing 262 n n 
C5 H5C2 BPH sing 263 n n 
C6 H6C1 BPH sing 264 n n 
C6 H6C2 BPH sing 265 n n 
C7 H7C1 BPH sing 266 n n 
C7 H7C2 BPH sing 267 n n 
C8 H8 BPH sing 268 n n 
C9 H9C1 BPH sing 269 n n 
C9 H9C2 BPH sing 270 n n 
C9 H9C3 BPH sing 271 n n 
C10 H101 BPH sing 272 n n 
C10 H102 BPH sing 273 n n 
C11 H111 BPH sing 274 n n 
C11 H112 BPH sing 275 n n 
C12 H121 BPH sing 276 n n 
C12 H122 BPH sing 277 n n 
C13 H13 BPH sing 278 n n 
C14 H141 BPH sing 279 n n 
C14 H142 BPH sing 280 n n 
C14 H143 BPH sing 281 n n 
C15 H151 BPH sing 282 n n 
C15 H152 BPH sing 283 n n 
C16 H161 BPH sing 284 n n 
C16 H162 BPH sing 285 n n 
C17 H171 BPH sing 286 n n 
C17 H172 BPH sing 287 n n 
C18 H18 BPH sing 288 n n 
C19 H191 BPH sing 289 n n 
C19 H192 BPH sing 290 n n 
C19 H193 BPH sing 291 n n 
C20 H201 BPH sing 292 n n 
C20 H202 BPH sing 293 n n 
C20 H203 BPH sing 294 n n 
#
_atom_sites.entry_id                     1PYH 
_atom_sites.fract_transf_matrix[1][1]    0.013151 
_atom_sites.fract_transf_matrix[1][2]    -0.005713 
_atom_sites.fract_transf_matrix[1][3]    -0.002667 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00916 
_atom_sites.fract_transf_matrix[2][3]    -0.002546 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IA 6 BCL A 1 301 301 BCL BCL . 
JA 6 BCL A 1 302 302 BCL BCL . 
KA 7 BPH A 1 401 401 BPH BPH . 
LA 8 FE B 1 500 500 FE FE . 
MA 6 BCL B 1 303 303 BCL BCL . 
NA 6 BCL B 1 304 304 BCL BCL . 
OA 7 BPH B 1 402 402 BPH BPH . 
PA 6 BCL D 1 2 2 BCL BCL . 
QA 6 BCL E 1 1 1 BCL BCL . 
RA 6 BCL F 1 4 4 BCL BCL . 
SA 6 BCL G 1 3 3 BCL BCL . 
TA 6 BCL H 1 6 6 BCL BCL . 
UA 6 BCL I 1 5 5 BCL BCL . 
VA 6 BCL J 1 8 8 BCL BCL . 
WA 6 BCL K 1 36 7 BCL BCL . 
XA 6 BCL L 1 10 10 BCL BCL . 
YA 6 BCL M 1 36 9 BCL BCL . 
ZA 6 BCL N 1 11 11 BCL BCL . 
AB 6 BCL N 1 38 12 BCL BCL . 
BB 6 BCL P 1 38 13 BCL BCL . 
CB 6 BCL P 1 39 14 BCL BCL . 
DB 6 BCL R 1 38 16 BCL BCL . 
EB 6 BCL S 1 36 15 BCL BCL . 
FB 6 BCL T 1 38 18 BCL BCL . 
GB 6 BCL U 1 36 17 BCL BCL . 
HB 6 BCL V 1 38 19 BCL BCL . 
IB 6 BCL W 1 36 20 BCL BCL . 
JB 6 BCL Y 1 36 21 BCL BCL . 
KB 6 BCL Y 1 37 22 BCL BCL . 
LB 6 BCL 1 1 38 26 BCL BCL . 
MB 6 BCL 2 1 36 25 BCL BCL . 
NB 6 BCL 3 1 38 27 BCL BCL . 
OB 6 BCL 3 1 39 28 BCL BCL . 
PB 6 BCL 5 1 38 30 BCL BCL . 
QB 6 BCL 6 1 36 29 BCL BCL . 
RB 6 BCL 7 1 38 32 BCL BCL . 
SB 6 BCL 8 1 36 31 BCL BCL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1D BPH . . . OA 7 -0.483 -1.78 13.914 1 198.26 ? O1D BPH 402 B 1 
HETATM 2 C CGD BPH . . . OA 7 0.18 -1.954 12.907 1 198.26 ? CGD BPH 402 B 1 
HETATM 3 O O2D BPH . . . OA 7 0.539 -0.963 12.11 1 198.26 ? O2D BPH 402 B 1 
HETATM 4 C CED BPH . . . OA 7 0.137 0.341 12.471 1 198.26 ? CED BPH 402 B 1 
HETATM 5 C CBD BPH . . . OA 7 0.696 -3.272 12.458 1 198.26 ? CBD BPH 402 B 1 
HETATM 6 C CHA BPH . . . OA 7 2.088 -3.216 11.829 1 198.26 ? CHA BPH 402 B 1 
HETATM 7 C C4D BPH . . . OA 7 1.933 -3.603 10.528 1 198.26 ? C4D BPH 402 B 1 
HETATM 8 C C3D BPH . . . OA 7 0.594 -3.951 10.175 1 198.26 ? C3D BPH 402 B 1 
HETATM 9 C CAD BPH . . . OA 7 -0.229 -3.751 11.335 1 198.26 ? CAD BPH 402 B 1 
HETATM 10 O OBD BPH . . . OA 7 -1.398 -3.975 11.492 1 198.26 ? OBD BPH 402 B 1 
HETATM 11 C C2D BPH . . . OA 7 0.581 -4.352 8.878 1 198.26 ? C2D BPH 402 B 1 
HETATM 12 C CMD BPH . . . OA 7 -0.584 -4.782 8.048 1 198.26 ? CMD BPH 402 B 1 
HETATM 13 C C1D BPH . . . OA 7 1.943 -4.241 8.406 1 198.26 ? C1D BPH 402 B 1 
HETATM 14 N ND BPH . . . OA 7 2.73 -3.766 9.43 1 198.26 ? ND BPH 402 B 1 
HETATM 15 C CHD BPH . . . OA 7 2.504 -4.48 7.145 1 198.26 ? CHD BPH 402 B 1 
HETATM 16 C C4C BPH . . . OA 7 3.844 -4.386 6.805 1 198.26 ? C4C BPH 402 B 1 
HETATM 17 C C3C BPH . . . OA 7 4.375 -4.59 5.421 1 198.26 ? C3C BPH 402 B 1 
HETATM 18 C CAC BPH . . . OA 7 3.741 -5.692 4.558 1 198.26 ? CAC BPH 402 B 1 
HETATM 19 C CBC BPH . . . OA 7 3.691 -7.036 5.249 1 198.26 ? CBC BPH 402 B 1 
HETATM 20 C C2C BPH . . . OA 7 5.9 -4.54 5.646 1 198.26 ? C2C BPH 402 B 1 
HETATM 21 C CMC BPH . . . OA 7 6.827 -3.935 4.611 1 198.26 ? CMC BPH 402 B 1 
HETATM 22 C C1C BPH . . . OA 7 5.999 -4.011 7.04 1 198.26 ? C1C BPH 402 B 1 
HETATM 23 N NC BPH . . . OA 7 4.815 -3.964 7.694 1 198.26 ? NC BPH 402 B 1 
HETATM 24 C CHC BPH . . . OA 7 7.224 -3.643 7.549 1 198.26 ? CHC BPH 402 B 1 
HETATM 25 C C4B BPH . . . OA 7 7.499 -3.021 8.742 1 198.26 ? C4B BPH 402 B 1 
HETATM 26 C C3B BPH . . . OA 7 8.761 -2.493 9.182 1 198.26 ? C3B BPH 402 B 1 
HETATM 27 C CAB BPH . . . OA 7 9.981 -2.501 8.337 1 198.26 ? CAB BPH 402 B 1 
HETATM 28 C CBB BPH . . . OA 7 11.367 -2.568 8.941 1 198.26 ? CBB BPH 402 B 1 
HETATM 29 O OBB BPH . . . OA 7 9.886 -2.488 7.156 1 198.26 ? OBB BPH 402 B 1 
HETATM 30 C C2B BPH . . . OA 7 8.611 -1.981 10.42 1 198.26 ? C2B BPH 402 B 1 
HETATM 31 C CMB BPH . . . OA 7 9.627 -1.31 11.291 1 198.26 ? CMB BPH 402 B 1 
HETATM 32 C C1B BPH . . . OA 7 7.255 -2.201 10.832 1 198.26 ? C1B BPH 402 B 1 
HETATM 33 N NB BPH . . . OA 7 6.63 -2.805 9.771 1 198.26 ? NB BPH 402 B 1 
HETATM 34 C CHB BPH . . . OA 7 6.656 -1.791 11.988 1 198.26 ? CHB BPH 402 B 1 
HETATM 35 C C4A BPH . . . OA 7 5.312 -2.031 12.387 1 198.26 ? C4A BPH 402 B 1 
HETATM 36 C C3A BPH . . . OA 7 4.757 -1.525 13.653 1 198.26 ? C3A BPH 402 B 1 
HETATM 37 C CMA BPH . . . OA 7 4.591 -0.023 13.51 1 198.26 ? CMA BPH 402 B 1 
HETATM 38 C C2A BPH . . . OA 7 3.374 -2.136 13.72 1 198.26 ? C2A BPH 402 B 1 
HETATM 39 C C1A BPH . . . OA 7 3.232 -2.726 12.378 1 198.26 ? C1A BPH 402 B 1 
HETATM 40 N NA BPH . . . OA 7 4.403 -2.688 11.646 1 198.26 ? NA BPH 402 B 1 
HETATM 41 C CAA BPH . . . OA 7 3.492 -3.316 14.701 1 198.26 ? CAA BPH 402 B 1 
HETATM 42 C CBA BPH . . . OA 7 3.535 -2.925 16.169 1 198.26 ? CBA BPH 402 B 1 
HETATM 43 C CGA BPH . . . OA 7 3.832 -4.012 17.116 1 198.26 ? CGA BPH 402 B 1 
HETATM 44 O O1A BPH . . . OA 7 4.113 -5.168 16.9 1 198.26 ? O1A BPH 402 B 1 
HETATM 45 O O2A BPH . . . OA 7 3.729 -3.678 18.352 1 198.26 ? O2A BPH 402 B 1 
HETATM 46 C C1 BPH . . . OA 7 4.012 -4.646 19.374 1 198.26 ? C1 BPH 402 B 1 
HETATM 47 C C2 BPH . . . OA 7 5.493 -4.567 19.734 1 198.26 ? C2 BPH 402 B 1 
HETATM 48 C C3 BPH . . . OA 7 6 -3.627 20.505 1 198.26 ? C3 BPH 402 B 1 
HETATM 49 C C4 BPH . . . OA 7 5.171 -2.523 21.137 1 198.26 ? C4 BPH 402 B 1 
HETATM 50 C C5 BPH . . . OA 7 7.474 -3.513 20.828 1 198.26 ? C5 BPH 402 B 1 
HETATM 51 C C6 BPH . . . OA 7 8.159 -4.806 21.134 1 198.26 ? C6 BPH 402 B 1 
HETATM 52 C C7 BPH . . . OA 7 9.598 -4.522 21.55 1 198.26 ? C7 BPH 402 B 1 
HETATM 53 C C8 BPH . . . OA 7 10.428 -5.794 21.481 1 198.26 ? C8 BPH 402 B 1 
HETATM 54 C C9 BPH . . . OA 7 9.976 -6.78 22.545 1 198.26 ? C9 BPH 402 B 1 
HETATM 55 C C10 BPH . . . OA 7 11.898 -5.462 21.642 1 198.26 ? C10 BPH 402 B 1 
HETATM 56 C C11 BPH . . . OA 7 12.542 -4.828 20.419 1 198.26 ? C11 BPH 402 B 1 
HETATM 57 C C12 BPH . . . OA 7 13.124 -5.929 19.606 1 198.26 ? C12 BPH 402 B 1 
HETATM 58 C C13 BPH . . . OA 7 13.35 -5.557 18.168 1 198.26 ? C13 BPH 402 B 1 
HETATM 59 C C14 BPH . . . OA 7 13.516 -6.836 17.387 1 198.26 ? C14 BPH 402 B 1 
HETATM 60 C C15 BPH . . . OA 7 14.61 -4.712 18.063 1 198.26 ? C15 BPH 402 B 1 
HETATM 61 C C16 BPH . . . OA 7 14.824 -4.287 16.619 1 198.26 ? C16 BPH 402 B 1 
HETATM 62 C C17 BPH . . . OA 7 15.931 -3.266 16.524 1 198.26 ? C17 BPH 402 B 1 
HETATM 63 C C18 BPH . . . OA 7 16.079 -2.653 15.154 1 198.26 ? C18 BPH 402 B 1 
HETATM 64 C C19 BPH . . . OA 7 16.605 -3.653 14.171 1 198.26 ? C19 BPH 402 B 1 
HETATM 65 C C20 BPH . . . OA 7 17.036 -1.479 15.159 1 198.26 ? C20 BPH 402 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           65 
#