data_1PYI # _model_server_result.job_id f-ZjBx9dUn6njhc6JqYRpQ _model_server_result.datetime_utc '2024-10-18 16:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":322}' # _entry.id 1PYI # _exptl.entry_id 1PYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PYI _cell.length_a 53.8 _cell.length_b 92.6 _cell.length_c 174.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E ZN ZN . A ZN 21 1_555 C SG CYS 7 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 E ZN ZN . A ZN 21 1_555 C SG CYS 24 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 E ZN ZN . A ZN 21 1_555 C SG CYS 27 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 E ZN ZN . A ZN 21 1_555 C SG CYS 34 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 F ZN ZN . A ZN 22 1_555 C SG CYS 7 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc6 F ZN ZN . A ZN 22 1_555 C SG CYS 10 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc7 F ZN ZN . A ZN 22 1_555 C SG CYS 17 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc8 F ZN ZN . A ZN 22 1_555 C SG CYS 24 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 D SG CYS 7 B CYS 34 1_555 G ZN ZN . B ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 D SG CYS 7 B CYS 34 1_555 H ZN ZN . B ZN 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc11 D SG CYS 10 B CYS 37 1_555 H ZN ZN . B ZN 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 D SG CYS 17 B CYS 44 1_555 H ZN ZN . B ZN 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc13 D SG CYS 24 B CYS 51 1_555 G ZN ZN . B ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 D SG CYS 24 B CYS 51 1_555 H ZN ZN . B ZN 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc15 D SG CYS 27 B CYS 54 1_555 G ZN ZN . B ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc16 D SG CYS 34 B CYS 61 1_555 G ZN ZN . B ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 D DT 1 1_555 B N1 DA 14 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 D DT 1 1_555 B N6 DA 14 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 2 D DC 2 1_555 B N1 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 2 D DC 2 1_555 B O6 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 2 D DC 2 1_555 B N2 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 D DG 3 1_555 B N3 DC 12 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 D DG 3 1_555 B O2 DC 12 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 D DG 3 1_555 B N4 DC 12 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 4 D DG 4 1_555 B N3 DC 11 E DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 4 D DG 4 1_555 B O2 DC 11 E DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 4 D DG 4 1_555 B N4 DC 11 E DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog12 A N1 DA 6 D DA 6 1_555 B N3 DT 9 E DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 7 D DA 7 1_555 B N3 DT 8 E DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 7 D DA 7 1_555 B O4 DT 8 E DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 8 D DT 8 1_555 B N1 DA 7 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 8 D DT 8 1_555 B N6 DA 7 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 10 D DG 10 1_555 B N3 DC 5 E DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 10 D DG 10 1_555 B O2 DC 5 E DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 10 D DG 10 1_555 B N4 DC 5 E DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 11 D DC 11 1_555 B N1 DG 4 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 11 D DC 11 1_555 B O6 DG 4 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 11 D DC 11 1_555 B N2 DG 4 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 12 D DC 12 1_555 B N1 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 12 D DC 12 1_555 B O6 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 12 D DC 12 1_555 B N2 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DG 13 D DG 13 1_555 B N3 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N2 DG 13 D DG 13 1_555 B O2 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O6 DG 13 D DG 13 1_555 B N4 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N1 DA 14 D DA 14 1_555 B N3 DT 1 E DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N6 DA 14 D DA 14 1_555 B O4 DT 1 E DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PYI _atom_sites.fract_transf_matrix[1][1] 0.018587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 21 21 ZN ZN . F 3 ZN A 1 22 22 ZN ZN . G 3 ZN B 1 321 321 ZN ZN . H 3 ZN B 1 322 322 ZN ZN . I 4 HOH E 1 501 501 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.399 _atom_site.Cartn_y 94.419 _atom_site.Cartn_z 119.397 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 322 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #