data_1PYX # _model_server_result.job_id u5rhmJktqpOqzB7iyrUKQg _model_server_result.datetime_utc '2024-11-29 17:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2002}' # _entry.id 1PYX # _exptl.entry_id 1PYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PYX _cell.length_a 82.691 _cell.length_b 85.209 _cell.length_c 178.138 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 188 A ASN 186 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A OD2 ASP 202 A ASP 200 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A OD2 ASP 202 A ASP 200 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc4 A OD1 ASP 202 A ASP 200 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 I O HOH . A HOH 664 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc6 I O HOH . A HOH 665 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 E O2G ANP . A ANP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc8 E N3B ANP . A ANP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc9 E O2A ANP . A ANP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 E O3G ANP . A ANP 1001 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 E O2B ANP . A ANP 1001 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc12 B OD1 ASN 188 B ASN 186 1_555 F MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc13 B OD2 ASP 202 B ASP 200 1_555 F MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 B OD2 ASP 202 B ASP 200 1_555 G MG MG . B MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc15 B OD1 ASP 202 B ASP 200 1_555 G MG MG . B MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc16 J O HOH . B HOH 666 1_555 G MG MG . B MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc17 J O HOH . B HOH 667 1_555 G MG MG . B MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc18 H O2G ANP . B ANP 2001 1_555 F MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc19 H N3B ANP . B ANP 2001 1_555 F MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc20 H O2A ANP . B ANP 2001 1_555 F MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc21 H O2B ANP . B ANP 2001 1_555 G MG MG . B MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc22 H O3G ANP . B ANP 2001 1_555 G MG MG . B MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PYX _atom_sites.fract_transf_matrix[1][1] 0.012093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1002 1002 MG MG . D 2 MG A 1 1003 1003 MG MG . E 3 ANP A 1 1001 1001 ANP ANP . F 2 MG B 1 2002 2002 MG MG . G 2 MG B 1 2003 2003 MG MG . H 3 ANP B 1 2001 2001 ANP ANP . I 4 HOH A 1 503 503 HOH HOH . I 4 HOH A 2 504 504 HOH HOH . I 4 HOH A 3 509 509 HOH HOH . I 4 HOH A 4 510 510 HOH HOH . I 4 HOH A 5 511 511 HOH HOH . I 4 HOH A 6 512 512 HOH HOH . I 4 HOH A 7 513 513 HOH HOH . I 4 HOH A 8 518 518 HOH HOH . I 4 HOH A 9 519 519 HOH HOH . I 4 HOH A 10 520 520 HOH HOH . I 4 HOH A 11 521 521 HOH HOH . I 4 HOH A 12 523 523 HOH HOH . I 4 HOH A 13 525 525 HOH HOH . I 4 HOH A 14 526 526 HOH HOH . I 4 HOH A 15 527 527 HOH HOH . I 4 HOH A 16 528 528 HOH HOH . I 4 HOH A 17 530 530 HOH HOH . I 4 HOH A 18 533 533 HOH HOH . I 4 HOH A 19 534 534 HOH HOH . I 4 HOH A 20 538 538 HOH HOH . I 4 HOH A 21 543 543 HOH HOH . I 4 HOH A 22 544 544 HOH HOH . I 4 HOH A 23 545 545 HOH HOH . I 4 HOH A 24 549 549 HOH HOH . I 4 HOH A 25 552 552 HOH HOH . I 4 HOH A 26 556 556 HOH HOH . I 4 HOH A 27 557 557 HOH HOH . I 4 HOH A 28 559 559 HOH HOH . I 4 HOH A 29 560 560 HOH HOH . I 4 HOH A 30 561 561 HOH HOH . I 4 HOH A 31 563 563 HOH HOH . I 4 HOH A 32 567 567 HOH HOH . I 4 HOH A 33 568 568 HOH HOH . I 4 HOH A 34 569 569 HOH HOH . I 4 HOH A 35 570 570 HOH HOH . I 4 HOH A 36 571 571 HOH HOH . I 4 HOH A 37 572 572 HOH HOH . I 4 HOH A 38 573 573 HOH HOH . I 4 HOH A 39 574 574 HOH HOH . I 4 HOH A 40 575 575 HOH HOH . I 4 HOH A 41 576 576 HOH HOH . I 4 HOH A 42 577 577 HOH HOH . I 4 HOH A 43 579 579 HOH HOH . I 4 HOH A 44 581 581 HOH HOH . I 4 HOH A 45 583 583 HOH HOH . I 4 HOH A 46 590 590 HOH HOH . I 4 HOH A 47 597 597 HOH HOH . I 4 HOH A 48 598 598 HOH HOH . I 4 HOH A 49 599 599 HOH HOH . I 4 HOH A 50 600 600 HOH HOH . I 4 HOH A 51 601 601 HOH HOH . I 4 HOH A 52 602 602 HOH HOH . I 4 HOH A 53 605 605 HOH HOH . I 4 HOH A 54 606 606 HOH HOH . I 4 HOH A 55 608 608 HOH HOH . I 4 HOH A 56 610 610 HOH HOH . I 4 HOH A 57 611 611 HOH HOH . I 4 HOH A 58 612 612 HOH HOH . I 4 HOH A 59 616 616 HOH HOH . I 4 HOH A 60 617 617 HOH HOH . I 4 HOH A 61 618 618 HOH HOH . I 4 HOH A 62 619 619 HOH HOH . I 4 HOH A 63 626 626 HOH HOH . I 4 HOH A 64 627 627 HOH HOH . I 4 HOH A 65 628 628 HOH HOH . I 4 HOH A 66 629 629 HOH HOH . I 4 HOH A 67 630 630 HOH HOH . I 4 HOH A 68 632 632 HOH HOH . I 4 HOH A 69 633 633 HOH HOH . I 4 HOH A 70 634 634 HOH HOH . I 4 HOH A 71 635 635 HOH HOH . I 4 HOH A 72 636 636 HOH HOH . I 4 HOH A 73 637 637 HOH HOH . I 4 HOH A 74 638 638 HOH HOH . I 4 HOH A 75 639 639 HOH HOH . I 4 HOH A 76 640 640 HOH HOH . I 4 HOH A 77 641 641 HOH HOH . I 4 HOH A 78 642 642 HOH HOH . I 4 HOH A 79 644 644 HOH HOH . I 4 HOH A 80 645 645 HOH HOH . I 4 HOH A 81 660 660 HOH HOH . I 4 HOH A 82 662 662 HOH HOH . I 4 HOH A 83 663 663 HOH HOH . I 4 HOH A 84 664 664 HOH HOH . I 4 HOH A 85 665 665 HOH HOH . J 4 HOH B 1 501 501 HOH HOH . J 4 HOH B 2 502 502 HOH HOH . J 4 HOH B 3 505 505 HOH HOH . J 4 HOH B 4 506 506 HOH HOH . J 4 HOH B 5 507 507 HOH HOH . J 4 HOH B 6 508 508 HOH HOH . J 4 HOH B 7 514 514 HOH HOH . J 4 HOH B 8 515 515 HOH HOH . J 4 HOH B 9 516 516 HOH HOH . J 4 HOH B 10 517 517 HOH HOH . J 4 HOH B 11 522 522 HOH HOH . J 4 HOH B 12 524 524 HOH HOH . J 4 HOH B 13 529 529 HOH HOH . J 4 HOH B 14 531 531 HOH HOH . J 4 HOH B 15 532 532 HOH HOH . J 4 HOH B 16 535 535 HOH HOH . J 4 HOH B 17 536 536 HOH HOH . J 4 HOH B 18 537 537 HOH HOH . J 4 HOH B 19 539 539 HOH HOH . J 4 HOH B 20 540 540 HOH HOH . J 4 HOH B 21 541 541 HOH HOH . J 4 HOH B 22 542 542 HOH HOH . J 4 HOH B 23 546 546 HOH HOH . J 4 HOH B 24 547 547 HOH HOH . J 4 HOH B 25 548 548 HOH HOH . J 4 HOH B 26 550 550 HOH HOH . J 4 HOH B 27 551 551 HOH HOH . J 4 HOH B 28 553 553 HOH HOH . J 4 HOH B 29 554 554 HOH HOH . J 4 HOH B 30 555 555 HOH HOH . J 4 HOH B 31 558 558 HOH HOH . J 4 HOH B 32 562 562 HOH HOH . J 4 HOH B 33 564 564 HOH HOH . J 4 HOH B 34 565 565 HOH HOH . J 4 HOH B 35 566 566 HOH HOH . J 4 HOH B 36 578 578 HOH HOH . J 4 HOH B 37 580 580 HOH HOH . J 4 HOH B 38 582 582 HOH HOH . J 4 HOH B 39 584 584 HOH HOH . J 4 HOH B 40 585 585 HOH HOH . J 4 HOH B 41 586 586 HOH HOH . J 4 HOH B 42 587 587 HOH HOH . J 4 HOH B 43 588 588 HOH HOH . J 4 HOH B 44 589 589 HOH HOH . J 4 HOH B 45 591 591 HOH HOH . J 4 HOH B 46 592 592 HOH HOH . J 4 HOH B 47 593 593 HOH HOH . J 4 HOH B 48 594 594 HOH HOH . J 4 HOH B 49 595 595 HOH HOH . J 4 HOH B 50 596 596 HOH HOH . J 4 HOH B 51 603 603 HOH HOH . J 4 HOH B 52 604 604 HOH HOH . J 4 HOH B 53 607 607 HOH HOH . J 4 HOH B 54 609 609 HOH HOH . J 4 HOH B 55 613 613 HOH HOH . J 4 HOH B 56 614 614 HOH HOH . J 4 HOH B 57 615 615 HOH HOH . J 4 HOH B 58 620 620 HOH HOH . J 4 HOH B 59 621 621 HOH HOH . J 4 HOH B 60 622 622 HOH HOH . J 4 HOH B 61 623 623 HOH HOH . J 4 HOH B 62 624 624 HOH HOH . J 4 HOH B 63 625 625 HOH HOH . J 4 HOH B 64 631 631 HOH HOH . J 4 HOH B 65 643 643 HOH HOH . J 4 HOH B 66 646 646 HOH HOH . J 4 HOH B 67 647 647 HOH HOH . J 4 HOH B 68 648 648 HOH HOH . J 4 HOH B 69 649 649 HOH HOH . J 4 HOH B 70 650 650 HOH HOH . J 4 HOH B 71 651 651 HOH HOH . J 4 HOH B 72 652 652 HOH HOH . J 4 HOH B 73 653 653 HOH HOH . J 4 HOH B 74 654 654 HOH HOH . J 4 HOH B 75 655 655 HOH HOH . J 4 HOH B 76 656 656 HOH HOH . J 4 HOH B 77 657 657 HOH HOH . J 4 HOH B 78 658 658 HOH HOH . J 4 HOH B 79 659 659 HOH HOH . J 4 HOH B 80 661 661 HOH HOH . J 4 HOH B 81 666 666 HOH HOH . J 4 HOH B 82 667 667 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.39 _atom_site.Cartn_y -11.367 _atom_site.Cartn_z 11.933 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #