data_1PZM # _model_server_result.job_id kdJBZ1AP1dsjDEo-rOwphg _model_server_result.datetime_utc '2025-02-27 08:17:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1PZM # _exptl.entry_id 1PZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PZM _cell.length_a 58.104 _cell.length_b 85.443 _cell.length_c 87.598 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1PZM _atom_sites.fract_transf_matrix[1][1] 0.017211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 301 301 5GP 5GP . D 2 5GP B 1 302 302 5GP 5GP . E 3 HOH A 1 302 1 HOH HOH . E 3 HOH A 2 303 3 HOH HOH . E 3 HOH A 3 304 4 HOH HOH . E 3 HOH A 4 305 6 HOH HOH . E 3 HOH A 5 306 7 HOH HOH . E 3 HOH A 6 307 8 HOH HOH . E 3 HOH A 7 308 12 HOH HOH . E 3 HOH A 8 309 14 HOH HOH . E 3 HOH A 9 310 16 HOH HOH . E 3 HOH A 10 311 21 HOH HOH . E 3 HOH A 11 312 23 HOH HOH . E 3 HOH A 12 313 25 HOH HOH . E 3 HOH A 13 314 26 HOH HOH . E 3 HOH A 14 315 27 HOH HOH . E 3 HOH A 15 316 31 HOH HOH . E 3 HOH A 16 317 32 HOH HOH . E 3 HOH A 17 318 33 HOH HOH . E 3 HOH A 18 319 36 HOH HOH . E 3 HOH A 19 320 37 HOH HOH . E 3 HOH A 20 321 40 HOH HOH . E 3 HOH A 21 322 42 HOH HOH . E 3 HOH A 22 323 45 HOH HOH . E 3 HOH A 23 324 53 HOH HOH . E 3 HOH A 24 325 54 HOH HOH . E 3 HOH A 25 326 59 HOH HOH . E 3 HOH A 26 327 61 HOH HOH . E 3 HOH A 27 328 62 HOH HOH . E 3 HOH A 28 329 67 HOH HOH . E 3 HOH A 29 330 69 HOH HOH . E 3 HOH A 30 331 71 HOH HOH . E 3 HOH A 31 332 79 HOH HOH . E 3 HOH A 32 333 82 HOH HOH . E 3 HOH A 33 334 83 HOH HOH . E 3 HOH A 34 335 84 HOH HOH . E 3 HOH A 35 336 85 HOH HOH . E 3 HOH A 36 337 89 HOH HOH . E 3 HOH A 37 338 95 HOH HOH . E 3 HOH A 38 339 96 HOH HOH . E 3 HOH A 39 340 98 HOH HOH . E 3 HOH A 40 341 99 HOH HOH . E 3 HOH A 41 342 100 HOH HOH . E 3 HOH A 42 343 104 HOH HOH . E 3 HOH A 43 344 106 HOH HOH . E 3 HOH A 44 345 108 HOH HOH . E 3 HOH A 45 346 110 HOH HOH . E 3 HOH A 46 347 111 HOH HOH . E 3 HOH A 47 348 114 HOH HOH . E 3 HOH A 48 349 115 HOH HOH . E 3 HOH A 49 350 120 HOH HOH . E 3 HOH A 50 351 121 HOH HOH . E 3 HOH A 51 352 122 HOH HOH . E 3 HOH A 52 353 129 HOH HOH . E 3 HOH A 53 354 130 HOH HOH . E 3 HOH A 54 355 131 HOH HOH . E 3 HOH A 55 356 134 HOH HOH . E 3 HOH A 56 357 135 HOH HOH . E 3 HOH A 57 358 136 HOH HOH . E 3 HOH A 58 359 140 HOH HOH . E 3 HOH A 59 360 141 HOH HOH . E 3 HOH A 60 361 142 HOH HOH . E 3 HOH A 61 362 144 HOH HOH . E 3 HOH A 62 363 145 HOH HOH . E 3 HOH A 63 364 147 HOH HOH . E 3 HOH A 64 365 149 HOH HOH . E 3 HOH A 65 366 150 HOH HOH . E 3 HOH A 66 367 153 HOH HOH . E 3 HOH A 67 368 155 HOH HOH . E 3 HOH A 68 369 156 HOH HOH . E 3 HOH A 69 370 157 HOH HOH . E 3 HOH A 70 371 158 HOH HOH . E 3 HOH A 71 372 160 HOH HOH . E 3 HOH A 72 373 163 HOH HOH . E 3 HOH A 73 374 167 HOH HOH . E 3 HOH A 74 375 169 HOH HOH . E 3 HOH A 75 376 171 HOH HOH . E 3 HOH A 76 377 173 HOH HOH . E 3 HOH A 77 378 175 HOH HOH . E 3 HOH A 78 379 178 HOH HOH . E 3 HOH A 79 380 188 HOH HOH . E 3 HOH A 80 381 190 HOH HOH . E 3 HOH A 81 382 193 HOH HOH . E 3 HOH A 82 383 194 HOH HOH . E 3 HOH A 83 384 195 HOH HOH . E 3 HOH A 84 385 197 HOH HOH . E 3 HOH A 85 386 198 HOH HOH . E 3 HOH A 86 387 199 HOH HOH . E 3 HOH A 87 388 200 HOH HOH . E 3 HOH A 88 389 207 HOH HOH . E 3 HOH A 89 390 208 HOH HOH . E 3 HOH A 90 391 209 HOH HOH . E 3 HOH A 91 392 211 HOH HOH . E 3 HOH A 92 393 212 HOH HOH . E 3 HOH A 93 394 213 HOH HOH . E 3 HOH A 94 395 214 HOH HOH . E 3 HOH A 95 396 215 HOH HOH . E 3 HOH A 96 397 218 HOH HOH . E 3 HOH A 97 398 223 HOH HOH . E 3 HOH A 98 399 224 HOH HOH . E 3 HOH A 99 400 225 HOH HOH . E 3 HOH A 100 401 226 HOH HOH . E 3 HOH A 101 402 227 HOH HOH . E 3 HOH A 102 403 230 HOH HOH . E 3 HOH A 103 404 233 HOH HOH . E 3 HOH A 104 405 236 HOH HOH . E 3 HOH A 105 406 237 HOH HOH . E 3 HOH A 106 407 239 HOH HOH . E 3 HOH A 107 408 240 HOH HOH . E 3 HOH A 108 409 242 HOH HOH . E 3 HOH A 109 410 243 HOH HOH . F 3 HOH B 1 303 2 HOH HOH . F 3 HOH B 2 304 5 HOH HOH . F 3 HOH B 3 305 9 HOH HOH . F 3 HOH B 4 306 10 HOH HOH . F 3 HOH B 5 307 11 HOH HOH . F 3 HOH B 6 308 13 HOH HOH . F 3 HOH B 7 309 15 HOH HOH . F 3 HOH B 8 310 17 HOH HOH . F 3 HOH B 9 311 18 HOH HOH . F 3 HOH B 10 312 19 HOH HOH . F 3 HOH B 11 313 20 HOH HOH . F 3 HOH B 12 314 22 HOH HOH . F 3 HOH B 13 315 24 HOH HOH . F 3 HOH B 14 316 28 HOH HOH . F 3 HOH B 15 317 29 HOH HOH . F 3 HOH B 16 318 30 HOH HOH . F 3 HOH B 17 319 34 HOH HOH . F 3 HOH B 18 320 35 HOH HOH . F 3 HOH B 19 321 38 HOH HOH . F 3 HOH B 20 322 39 HOH HOH . F 3 HOH B 21 323 41 HOH HOH . F 3 HOH B 22 324 43 HOH HOH . F 3 HOH B 23 325 44 HOH HOH . F 3 HOH B 24 326 46 HOH HOH . F 3 HOH B 25 327 47 HOH HOH . F 3 HOH B 26 328 48 HOH HOH . F 3 HOH B 27 329 49 HOH HOH . F 3 HOH B 28 330 50 HOH HOH . F 3 HOH B 29 331 51 HOH HOH . F 3 HOH B 30 332 52 HOH HOH . F 3 HOH B 31 333 55 HOH HOH . F 3 HOH B 32 334 56 HOH HOH . F 3 HOH B 33 335 57 HOH HOH . F 3 HOH B 34 336 58 HOH HOH . F 3 HOH B 35 337 60 HOH HOH . F 3 HOH B 36 338 63 HOH HOH . F 3 HOH B 37 339 64 HOH HOH . F 3 HOH B 38 340 65 HOH HOH . F 3 HOH B 39 341 66 HOH HOH . F 3 HOH B 40 342 68 HOH HOH . F 3 HOH B 41 343 70 HOH HOH . F 3 HOH B 42 344 72 HOH HOH . F 3 HOH B 43 345 73 HOH HOH . F 3 HOH B 44 346 74 HOH HOH . F 3 HOH B 45 347 75 HOH HOH . F 3 HOH B 46 348 76 HOH HOH . F 3 HOH B 47 349 77 HOH HOH . F 3 HOH B 48 350 78 HOH HOH . F 3 HOH B 49 351 80 HOH HOH . F 3 HOH B 50 352 81 HOH HOH . F 3 HOH B 51 353 86 HOH HOH . F 3 HOH B 52 354 87 HOH HOH . F 3 HOH B 53 355 88 HOH HOH . F 3 HOH B 54 356 90 HOH HOH . F 3 HOH B 55 357 91 HOH HOH . F 3 HOH B 56 358 92 HOH HOH . F 3 HOH B 57 359 93 HOH HOH . F 3 HOH B 58 360 94 HOH HOH . F 3 HOH B 59 361 97 HOH HOH . F 3 HOH B 60 362 101 HOH HOH . F 3 HOH B 61 363 102 HOH HOH . F 3 HOH B 62 364 103 HOH HOH . F 3 HOH B 63 365 105 HOH HOH . F 3 HOH B 64 366 107 HOH HOH . F 3 HOH B 65 367 109 HOH HOH . F 3 HOH B 66 368 112 HOH HOH . F 3 HOH B 67 369 113 HOH HOH . F 3 HOH B 68 370 116 HOH HOH . F 3 HOH B 69 371 117 HOH HOH . F 3 HOH B 70 372 118 HOH HOH . F 3 HOH B 71 373 119 HOH HOH . F 3 HOH B 72 374 123 HOH HOH . F 3 HOH B 73 375 124 HOH HOH . F 3 HOH B 74 376 125 HOH HOH . F 3 HOH B 75 377 126 HOH HOH . F 3 HOH B 76 378 127 HOH HOH . F 3 HOH B 77 379 128 HOH HOH . F 3 HOH B 78 380 132 HOH HOH . F 3 HOH B 79 381 133 HOH HOH . F 3 HOH B 80 382 137 HOH HOH . F 3 HOH B 81 383 138 HOH HOH . F 3 HOH B 82 384 139 HOH HOH . F 3 HOH B 83 385 143 HOH HOH . F 3 HOH B 84 386 146 HOH HOH . F 3 HOH B 85 387 148 HOH HOH . F 3 HOH B 86 388 151 HOH HOH . F 3 HOH B 87 389 152 HOH HOH . F 3 HOH B 88 390 154 HOH HOH . F 3 HOH B 89 391 159 HOH HOH . F 3 HOH B 90 392 161 HOH HOH . F 3 HOH B 91 393 162 HOH HOH . F 3 HOH B 92 394 164 HOH HOH . F 3 HOH B 93 395 165 HOH HOH . F 3 HOH B 94 396 166 HOH HOH . F 3 HOH B 95 397 168 HOH HOH . F 3 HOH B 96 398 170 HOH HOH . F 3 HOH B 97 399 172 HOH HOH . F 3 HOH B 98 400 174 HOH HOH . F 3 HOH B 99 401 176 HOH HOH . F 3 HOH B 100 402 177 HOH HOH . F 3 HOH B 101 403 179 HOH HOH . F 3 HOH B 102 404 180 HOH HOH . F 3 HOH B 103 405 181 HOH HOH . F 3 HOH B 104 406 182 HOH HOH . F 3 HOH B 105 407 183 HOH HOH . F 3 HOH B 106 408 184 HOH HOH . F 3 HOH B 107 409 185 HOH HOH . F 3 HOH B 108 410 186 HOH HOH . F 3 HOH B 109 411 187 HOH HOH . F 3 HOH B 110 412 189 HOH HOH . F 3 HOH B 111 413 191 HOH HOH . F 3 HOH B 112 414 192 HOH HOH . F 3 HOH B 113 415 196 HOH HOH . F 3 HOH B 114 416 201 HOH HOH . F 3 HOH B 115 417 202 HOH HOH . F 3 HOH B 116 418 203 HOH HOH . F 3 HOH B 117 419 204 HOH HOH . F 3 HOH B 118 420 205 HOH HOH . F 3 HOH B 119 421 206 HOH HOH . F 3 HOH B 120 422 210 HOH HOH . F 3 HOH B 121 423 216 HOH HOH . F 3 HOH B 122 424 217 HOH HOH . F 3 HOH B 123 425 219 HOH HOH . F 3 HOH B 124 426 220 HOH HOH . F 3 HOH B 125 427 221 HOH HOH . F 3 HOH B 126 428 222 HOH HOH . F 3 HOH B 127 429 228 HOH HOH . F 3 HOH B 128 430 229 HOH HOH . F 3 HOH B 129 431 231 HOH HOH . F 3 HOH B 130 432 232 HOH HOH . F 3 HOH B 131 433 234 HOH HOH . F 3 HOH B 132 434 235 HOH HOH . F 3 HOH B 133 435 238 HOH HOH . F 3 HOH B 134 436 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . D 2 9.498 19.444 36.84 1 21.04 ? P 5GP 302 B 1 HETATM 2 O O1P 5GP . . . D 2 8.132 19.043 36.367 1 20.68 ? O1P 5GP 302 B 1 HETATM 3 O O2P 5GP . . . D 2 9.441 19.724 38.32 1 24.23 ? O2P 5GP 302 B 1 HETATM 4 O O3P 5GP . . . D 2 10.561 18.44 36.492 1 24.05 ? O3P 5GP 302 B 1 HETATM 5 O O5' 5GP . . . D 2 9.885 20.782 36.095 1 23.12 ? O5' 5GP 302 B 1 HETATM 6 C C5' 5GP . . . D 2 8.986 21.653 35.442 1 21.1 ? C5' 5GP 302 B 1 HETATM 7 C C4' 5GP . . . D 2 9.69 22.992 35.223 1 26.02 ? C4' 5GP 302 B 1 HETATM 8 O O4' 5GP . . . D 2 11 22.8 34.716 1 25.07 ? O4' 5GP 302 B 1 HETATM 9 C C3' 5GP . . . D 2 8.966 23.767 34.102 1 27.67 ? C3' 5GP 302 B 1 HETATM 10 O O3' 5GP . . . D 2 7.916 24.539 34.653 1 30.54 ? O3' 5GP 302 B 1 HETATM 11 C C2' 5GP . . . D 2 10.027 24.617 33.48 1 25.87 ? C2' 5GP 302 B 1 HETATM 12 O O2' 5GP . . . D 2 10.197 25.855 34.207 1 32.95 ? O2' 5GP 302 B 1 HETATM 13 C C1' 5GP . . . D 2 11.256 23.756 33.629 1 24.22 ? C1' 5GP 302 B 1 HETATM 14 N N9 5GP . . . D 2 11.315 22.997 32.385 1 23.6 ? N9 5GP 302 B 1 HETATM 15 C C8 5GP . . . D 2 11.224 21.635 32.161 1 24.21 ? C8 5GP 302 B 1 HETATM 16 N N7 5GP . . . D 2 11.575 21.373 30.836 1 25.51 ? N7 5GP 302 B 1 HETATM 17 C C5 5GP . . . D 2 11.819 22.589 30.277 1 19.73 ? C5 5GP 302 B 1 HETATM 18 C C6 5GP . . . D 2 12.097 22.953 28.947 1 23.98 ? C6 5GP 302 B 1 HETATM 19 O O6 5GP . . . D 2 12.2 22.112 28.024 1 18.78 ? O6 5GP 302 B 1 HETATM 20 N N1 5GP . . . D 2 12.313 24.286 28.66 1 20.72 ? N1 5GP 302 B 1 HETATM 21 C C2 5GP . . . D 2 12.209 25.234 29.636 1 22.85 ? C2 5GP 302 B 1 HETATM 22 N N2 5GP . . . D 2 12.439 26.513 29.341 1 21.95 ? N2 5GP 302 B 1 HETATM 23 N N3 5GP . . . D 2 11.91 24.871 30.915 1 23.41 ? N3 5GP 302 B 1 HETATM 24 C C4 5GP . . . D 2 11.722 23.53 31.211 1 24.12 ? C4 5GP 302 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #