data_1Q0S # _model_server_result.job_id -dI3yRFpDbrEZQezji3adg _model_server_result.datetime_utc '2025-07-21 15:08:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1Q0S # _exptl.entry_id 1Q0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q0S _cell.length_a 58.6 _cell.length_b 63.1 _cell.length_c 72.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1Q0S _atom_sites.fract_transf_matrix[1][1] 0.017065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 300 300 SAH SAH . C 3 HOH A 1 301 1 HOH TIP . C 3 HOH A 2 302 2 HOH TIP . C 3 HOH A 3 303 3 HOH TIP . C 3 HOH A 4 304 4 HOH TIP . C 3 HOH A 5 305 5 HOH TIP . C 3 HOH A 6 306 6 HOH TIP . C 3 HOH A 7 307 7 HOH TIP . C 3 HOH A 8 308 8 HOH TIP . C 3 HOH A 9 309 9 HOH TIP . C 3 HOH A 10 310 10 HOH TIP . C 3 HOH A 11 311 11 HOH TIP . C 3 HOH A 12 312 12 HOH TIP . C 3 HOH A 13 313 13 HOH TIP . C 3 HOH A 14 314 14 HOH TIP . C 3 HOH A 15 315 15 HOH TIP . C 3 HOH A 16 316 16 HOH TIP . C 3 HOH A 17 317 17 HOH TIP . C 3 HOH A 18 318 18 HOH TIP . C 3 HOH A 19 319 19 HOH TIP . C 3 HOH A 20 320 20 HOH TIP . C 3 HOH A 21 321 21 HOH TIP . C 3 HOH A 22 322 22 HOH TIP . C 3 HOH A 23 323 23 HOH TIP . C 3 HOH A 24 324 24 HOH TIP . C 3 HOH A 25 325 25 HOH TIP . C 3 HOH A 26 326 26 HOH TIP . C 3 HOH A 27 327 27 HOH TIP . C 3 HOH A 28 328 28 HOH TIP . C 3 HOH A 29 329 29 HOH TIP . C 3 HOH A 30 330 30 HOH TIP . C 3 HOH A 31 331 31 HOH TIP . C 3 HOH A 32 332 32 HOH TIP . C 3 HOH A 33 333 33 HOH TIP . C 3 HOH A 34 334 34 HOH TIP . C 3 HOH A 35 335 35 HOH TIP . C 3 HOH A 36 336 36 HOH TIP . C 3 HOH A 37 337 37 HOH TIP . C 3 HOH A 38 338 38 HOH TIP . C 3 HOH A 39 339 39 HOH TIP . C 3 HOH A 40 340 40 HOH TIP . C 3 HOH A 41 341 41 HOH TIP . C 3 HOH A 42 342 42 HOH TIP . C 3 HOH A 43 343 43 HOH TIP . C 3 HOH A 44 344 44 HOH TIP . C 3 HOH A 45 345 45 HOH TIP . C 3 HOH A 46 346 46 HOH TIP . C 3 HOH A 47 347 47 HOH TIP . C 3 HOH A 48 348 48 HOH TIP . C 3 HOH A 49 349 49 HOH TIP . C 3 HOH A 50 350 50 HOH TIP . C 3 HOH A 51 351 51 HOH TIP . C 3 HOH A 52 352 52 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 18.303 15.084 18.474 1 31 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 16.981 15.106 17.866 1 34.51 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 16.004 14.194 18.619 1 33.63 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 16.274 12.713 18.484 1 33.38 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 14.961 11.734 19.29 1 37.12 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 16.436 16.537 17.875 1 36.36 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 15.24 16.782 17.409 1 35.75 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 17.175 17.494 18.364 1 37.81 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 15.38 10.107 18.567 1 34.33 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 14.768 9.745 17.23 1 33.6 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 15.162 8.413 16.858 1 28.76 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 13.25 9.695 17.233 1 33.81 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 12.762 10.942 16.768 1 36.23 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 12.878 8.587 16.239 1 33.73 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 12.233 9.041 15.071 1 39.79 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 14.226 7.922 15.939 1 29.24 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 14.287 6.464 15.919 1 30.65 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 13.674 5.558 16.743 1 31.36 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 13.936 4.311 16.441 1 34.29 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 14.783 4.402 15.345 1 32.22 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 15.429 3.429 14.557 1 29.71 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 15.322 2.117 14.759 1 35.57 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 16.204 3.862 13.538 1 35.54 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 16.323 5.178 13.336 1 29.75 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 15.772 6.185 14.009 1 30.87 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 15.005 5.724 15.012 1 30.46 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 502 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #