data_1Q0T
#
_model_server_result.job_id            z6GQLHWoNf53VGYOnVURkQ 
_model_server_result.datetime_utc      '2025-03-05 19:25:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q0t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    1Q0T 
#
_exptl.entry_id    1Q0T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.2 
_cell.angle_gamma         90 
_cell.entry_id            1Q0T 
_cell.length_a            39.7 
_cell.length_b            109.7 
_cell.length_c            73.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q0T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N1 DA 1 C DA 402 1_555 B N3 DT 12 D DT 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 DA 1 C DA 402 1_555 B O4 DT 12 D DT 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N3 DC 2 C DC 403 1_555 B N1 DG 11 D DG 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N4 DC 2 C DC 403 1_555 B O6 DG 11 D DG 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O2 DC 2 C DC 403 1_555 B N2 DG 11 D DG 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 DA 3 C DA 404 1_555 B N3 DT 10 D DT 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 DA 3 C DA 404 1_555 B O4 DT 10 D DT 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N1 DG 4 C DG 405 1_555 B N3 DC 9 D DC 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N2 DG 4 C DG 405 1_555 B O2 DC 9 D DC 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O6 DG 4 C DG 405 1_555 B N4 DC 9 D DC 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N1 DG 5 C DG 406 1_555 B N3 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N2 DG 5 C DG 406 1_555 B O2 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O6 DG 5 C DG 406 1_555 B N4 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DA 6 C DA 407 1_555 B N3 DT 7 D DT 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N6 DA 6 C DA 407 1_555 B O4 DT 7 D DT 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 DT 7 C DT 408 1_555 B N1 DA 6 D DA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O4 DT 7 C DT 408 1_555 B N6 DA 6 D DA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 DC 8 C DC 409 1_555 B N1 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N4 DC 8 C DC 409 1_555 B O6 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O2 DC 8 C DC 409 1_555 B N2 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N3 DC 9 C DC 410 1_555 B N1 DG 4 D DG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N4 DC 9 C DC 410 1_555 B O6 DG 4 D DG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O2 DC 9 C DC 410 1_555 B N2 DG 4 D DG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 DT 10 C DT 411 1_555 B N1 DA 3 D DA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A O4 DT 10 C DT 411 1_555 B N6 DA 3 D DA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N1 DG 11 C DG 412 1_555 B N3 DC 2 D DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N2 DG 11 C DG 412 1_555 B O2 DC 2 D DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A O6 DG 11 C DG 412 1_555 B N4 DC 2 D DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A N3 DT 12 C DT 413 1_555 B N1 DA 1 D DA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A O4 DT 12 C DT 413 1_555 B N6 DA 1 D DA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 424 n n 
N HN1 SAH sing 425 n n 
N HN2 SAH sing 426 n n 
CA CB SAH sing 427 n n 
CA C SAH sing 428 n n 
CA HA SAH sing 429 n n 
CB CG SAH sing 430 n n 
CB HB1 SAH sing 431 n n 
CB HB2 SAH sing 432 n n 
CG SD SAH sing 433 n n 
CG HG1 SAH sing 434 n n 
CG HG2 SAH sing 435 n n 
SD C5' SAH sing 436 n n 
C O SAH doub 437 n n 
C OXT SAH sing 438 n n 
OXT HXT SAH sing 439 n n 
C5' C4' SAH sing 440 n n 
C5' "H5'1" SAH sing 441 n n 
C5' "H5'2" SAH sing 442 n n 
C4' O4' SAH sing 443 n n 
C4' C3' SAH sing 444 n n 
C4' H4' SAH sing 445 n n 
O4' C1' SAH sing 446 n n 
C3' O3' SAH sing 447 n n 
C3' C2' SAH sing 448 n n 
C3' H3' SAH sing 449 n n 
O3' HO3' SAH sing 450 n n 
C2' O2' SAH sing 451 n n 
C2' C1' SAH sing 452 n n 
C2' H2' SAH sing 453 n n 
O2' HO2' SAH sing 454 n n 
C1' N9 SAH sing 455 n n 
C1' H1' SAH sing 456 n n 
N9 C8 SAH sing 457 n y 
N9 C4 SAH sing 458 n y 
C8 N7 SAH doub 459 n y 
C8 H8 SAH sing 460 n n 
N7 C5 SAH sing 461 n y 
C5 C6 SAH sing 462 n y 
C5 C4 SAH doub 463 n y 
C6 N6 SAH sing 464 n n 
C6 N1 SAH doub 465 n y 
N6 HN61 SAH sing 466 n n 
N6 HN62 SAH sing 467 n n 
N1 C2 SAH sing 468 n y 
C2 N3 SAH doub 469 n y 
C2 H2 SAH sing 470 n n 
N3 C4 SAH sing 471 n y 
#
_atom_sites.entry_id                     1Q0T 
_atom_sites.fract_transf_matrix[1][1]    0.025189 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006374 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 IOD C 1 2 2 IOD I1 . 
F 3 IOD D 1 1 1 IOD I1 . 
G 4 SAH A 1 300 300 SAH SAH . 
H 4 SAH B 1 301 301 SAH SAH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . H 4 -5.857 2.963 37.61 1 15.94 ? N SAH 301 B 1 
HETATM 2 C CA SAH . . . H 4 -5.443 2.026 36.627 1 4.46 ? CA SAH 301 B 1 
HETATM 3 C CB SAH . . . H 4 -3.951 1.784 36.797 1 5.62 ? CB SAH 301 B 1 
HETATM 4 C CG SAH . . . H 4 -3.13 3.047 36.979 1 14.59 ? CG SAH 301 B 1 
HETATM 5 S SD SAH . . . H 4 -1.34 2.75 36.812 1 20.57 ? SD SAH 301 B 1 
HETATM 6 C C SAH . . . H 4 -6.24 0.787 37.011 1 12.68 ? C SAH 301 B 1 
HETATM 7 O O SAH . . . H 4 -5.662 -0.385 36.867 1 19.68 ? O SAH 301 B 1 
HETATM 8 O OXT SAH . . . H 4 -7.226 0.995 37.853 1 7.82 ? OXT SAH 301 B 1 
HETATM 9 C C5' SAH . . . H 4 -0.615 4.165 35.923 1 22.46 ? C5' SAH 301 B 1 
HETATM 10 C C4' SAH . . . H 4 -0.096 3.576 34.646 1 24.34 ? C4' SAH 301 B 1 
HETATM 11 O O4' SAH . . . H 4 0.345 4.645 33.782 1 26.76 ? O4' SAH 301 B 1 
HETATM 12 C C3' SAH . . . H 4 1.164 2.731 34.76 1 30.56 ? C3' SAH 301 B 1 
HETATM 13 O O3' SAH . . . H 4 0.866 1.402 35.167 1 38.28 ? O3' SAH 301 B 1 
HETATM 14 C C2' SAH . . . H 4 1.701 2.731 33.326 1 27.81 ? C2' SAH 301 B 1 
HETATM 15 O O2' SAH . . . H 4 1.175 1.684 32.538 1 14.28 ? O2' SAH 301 B 1 
HETATM 16 C C1' SAH . . . H 4 1.223 4.097 32.812 1 30.04 ? C1' SAH 301 B 1 
HETATM 17 N N9 SAH . . . H 4 2.306 5.034 32.565 1 28.38 ? N9 SAH 301 B 1 
HETATM 18 C C8 SAH . . . H 4 3.501 5.132 33.234 1 24.84 ? C8 SAH 301 B 1 
HETATM 19 N N7 SAH . . . H 4 4.306 6.043 32.733 1 33.48 ? N7 SAH 301 B 1 
HETATM 20 C C5 SAH . . . H 4 3.581 6.583 31.674 1 25.33 ? C5 SAH 301 B 1 
HETATM 21 C C6 SAH . . . H 4 3.885 7.579 30.738 1 25.61 ? C6 SAH 301 B 1 
HETATM 22 N N6 SAH . . . H 4 5.056 8.244 30.716 1 19.42 ? N6 SAH 301 B 1 
HETATM 23 N N1 SAH . . . H 4 2.943 7.877 29.812 1 27.22 ? N1 SAH 301 B 1 
HETATM 24 C C2 SAH . . . H 4 1.777 7.213 29.842 1 20.52 ? C2 SAH 301 B 1 
HETATM 25 N N3 SAH . . . H 4 1.378 6.254 30.676 1 26.38 ? N3 SAH 301 B 1 
HETATM 26 C C4 SAH . . . H 4 2.342 5.982 31.571 1 24.71 ? C4 SAH 301 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           26 
#