data_1Q12 # _model_server_result.job_id -RRu9jGN_ixPqFKhs9Rv7w _model_server_result.datetime_utc '2024-11-06 03:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":382}' # _entry.id 1Q12 # _exptl.entry_id 1Q12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.59 _cell.angle_beta 82.47 _cell.angle_gamma 76.85 _cell.entry_id 1Q12 _cell.length_a 59.88 _cell.length_b 97.278 _cell.length_c 101.862 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1Q12 _atom_sites.fract_transf_matrix[1][1] 0.0167 _atom_sites.fract_transf_matrix[1][2] -0.003902 _atom_sites.fract_transf_matrix[1][3] -0.001293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010557 _atom_sites.fract_transf_matrix[2][3] -0.00266 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 382 302 ATP ATP . F 2 ATP B 1 382 301 ATP ATP . G 2 ATP C 1 382 304 ATP ATP . H 2 ATP D 1 382 303 ATP ATP . I 3 HOH C 1 383 1 HOH HOH . I 3 HOH C 2 384 2 HOH HOH . I 3 HOH C 3 385 3 HOH HOH . I 3 HOH C 4 386 4 HOH HOH . I 3 HOH C 5 387 6 HOH HOH . I 3 HOH C 6 388 7 HOH HOH . I 3 HOH C 7 389 8 HOH HOH . I 3 HOH C 8 390 9 HOH HOH . I 3 HOH C 9 391 10 HOH HOH . J 3 HOH D 1 383 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 -6.452 -11.79 10.038 1 47.65 ? PG ATP 382 A 1 HETATM 2 O O1G ATP . . . E 2 -5.311 -11.838 11.026 1 46.37 ? O1G ATP 382 A 1 HETATM 3 O O2G ATP . . . E 2 -7.687 -11.079 10.445 1 47.77 ? O2G ATP 382 A 1 HETATM 4 O O3G ATP . . . E 2 -5.935 -11.251 8.759 1 49.23 ? O3G ATP 382 A 1 HETATM 5 P PB ATP . . . E 2 -6.192 -14.614 9.506 1 44.23 ? PB ATP 382 A 1 HETATM 6 O O1B ATP . . . E 2 -6.787 -15.619 8.682 1 38.15 ? O1B ATP 382 A 1 HETATM 7 O O2B ATP . . . E 2 -4.814 -14.706 9.968 1 42.37 ? O2B ATP 382 A 1 HETATM 8 O O3B ATP . . . E 2 -6.944 -13.23 9.598 1 45.41 ? O3B ATP 382 A 1 HETATM 9 P PA ATP . . . E 2 -6.693 -16.506 11.755 1 56.96 ? PA ATP 382 A 1 HETATM 10 O O1A ATP . . . E 2 -6.154 -16.16 13.046 1 56.31 ? O1A ATP 382 A 1 HETATM 11 O O2A ATP . . . E 2 -6.829 -17.886 11.29 1 54.3 ? O2A ATP 382 A 1 HETATM 12 O O3A ATP . . . E 2 -7.056 -15.295 10.785 1 53.33 ? O3A ATP 382 A 1 HETATM 13 O O5' ATP . . . E 2 -7.984 -16.403 12.448 1 63.79 ? O5' ATP 382 A 1 HETATM 14 C C5' ATP . . . E 2 -9.249 -16.446 12.531 1 73.72 ? C5' ATP 382 A 1 HETATM 15 C C4' ATP . . . E 2 -10.545 -17.147 12.335 1 78.74 ? C4' ATP 382 A 1 HETATM 16 O O4' ATP . . . E 2 -10.448 -18.283 13.221 1 81.69 ? O4' ATP 382 A 1 HETATM 17 C C3' ATP . . . E 2 -11.378 -16.049 12.843 1 82.85 ? C3' ATP 382 A 1 HETATM 18 O O3' ATP . . . E 2 -12.298 -15.488 11.912 1 81.47 ? O3' ATP 382 A 1 HETATM 19 C C2' ATP . . . E 2 -12.028 -16.658 14.128 1 84.57 ? C2' ATP 382 A 1 HETATM 20 O O2' ATP . . . E 2 -13.428 -16.758 13.973 1 89.09 ? O2' ATP 382 A 1 HETATM 21 C C1' ATP . . . E 2 -11.382 -18.064 14.322 1 85.45 ? C1' ATP 382 A 1 HETATM 22 N N9 ATP . . . E 2 -10.669 -18.233 15.602 1 88.58 ? N9 ATP 382 A 1 HETATM 23 C C8 ATP . . . E 2 -9.356 -17.907 15.98 1 90.9 ? C8 ATP 382 A 1 HETATM 24 N N7 ATP . . . E 2 -9.066 -18.214 17.212 1 92.04 ? N7 ATP 382 A 1 HETATM 25 C C5 ATP . . . E 2 -10.259 -18.768 17.669 1 91.44 ? C5 ATP 382 A 1 HETATM 26 C C6 ATP . . . E 2 -10.654 -19.336 18.933 1 91.45 ? C6 ATP 382 A 1 HETATM 27 N N6 ATP . . . E 2 -9.822 -19.389 19.961 1 90.94 ? N6 ATP 382 A 1 HETATM 28 N N1 ATP . . . E 2 -11.953 -19.825 19.069 1 91.75 ? N1 ATP 382 A 1 HETATM 29 C C2 ATP . . . E 2 -12.822 -19.78 18.032 1 91.38 ? C2 ATP 382 A 1 HETATM 30 N N3 ATP . . . E 2 -12.574 -19.279 16.801 1 90.68 ? N3 ATP 382 A 1 HETATM 31 C C4 ATP . . . E 2 -11.229 -18.789 16.695 1 90.83 ? C4 ATP 382 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #