data_1Q12
#
_model_server_result.job_id            VQ_lD1gEKJc096Z9hwRCMg 
_model_server_result.datetime_utc      '2024-11-06 03:10:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":382}' 
#
_entry.id    1Q12 
#
_exptl.entry_id    1Q12 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         74.59 
_cell.angle_beta          82.47 
_cell.angle_gamma         76.85 
_cell.entry_id            1Q12 
_cell.length_a            59.88 
_cell.length_b            97.278 
_cell.length_c            101.862 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1Q12 
_atom_sites.fract_transf_matrix[1][1]    0.0167 
_atom_sites.fract_transf_matrix[1][2]    -0.003902 
_atom_sites.fract_transf_matrix[1][3]    -0.001293 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010557 
_atom_sites.fract_transf_matrix[2][3]    -0.00266 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 382 302 ATP ATP . 
F 2 ATP B 1 382 301 ATP ATP . 
G 2 ATP C 1 382 304 ATP ATP . 
H 2 ATP D 1 382 303 ATP ATP . 
I 3 HOH C 1 383 1 HOH HOH . 
I 3 HOH C 2 384 2 HOH HOH . 
I 3 HOH C 3 385 3 HOH HOH . 
I 3 HOH C 4 386 4 HOH HOH . 
I 3 HOH C 5 387 6 HOH HOH . 
I 3 HOH C 6 388 7 HOH HOH . 
I 3 HOH C 7 389 8 HOH HOH . 
I 3 HOH C 8 390 9 HOH HOH . 
I 3 HOH C 9 391 10 HOH HOH . 
J 3 HOH D 1 383 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 2 7.477 3.263 13.597 1 66.61 ? PG ATP 382 B 1 
HETATM 2 O O1G ATP . . . F 2 6.384 2.843 14.541 1 64.9 ? O1G ATP 382 B 1 
HETATM 3 O O2G ATP . . . F 2 8.692 2.409 13.557 1 63.09 ? O2G ATP 382 B 1 
HETATM 4 O O3G ATP . . . F 2 6.892 3.436 12.249 1 65.2 ? O3G ATP 382 B 1 
HETATM 5 P PB ATP . . . F 2 7.366 5.985 14.659 1 68.07 ? PB ATP 382 B 1 
HETATM 6 O O1B ATP . . . F 2 7.985 7.249 14.468 1 66.48 ? O1B ATP 382 B 1 
HETATM 7 O O2B ATP . . . F 2 6.043 5.875 15.241 1 67.77 ? O2B ATP 382 B 1 
HETATM 8 O O3B ATP . . . F 2 8.022 4.728 13.927 1 66.3 ? O3B ATP 382 B 1 
HETATM 9 P PA ATP . . . F 2 8.106 6.232 17.525 1 71.88 ? PA ATP 382 B 1 
HETATM 10 O O1A ATP . . . F 2 7.773 5.179 18.443 1 74.94 ? O1A ATP 382 B 1 
HETATM 11 O O2A ATP . . . F 2 8.114 7.637 17.91 1 72.53 ? O2A ATP 382 B 1 
HETATM 12 O O3A ATP . . . F 2 8.363 5.843 16.014 1 70.96 ? O3A ATP 382 B 1 
HETATM 13 O O5' ATP . . . F 2 9.45 5.859 17.948 1 76.58 ? O5' ATP 382 B 1 
HETATM 14 C C5' ATP . . . F 2 10.709 5.919 17.979 1 83.89 ? C5' ATP 382 B 1 
HETATM 15 C C4' ATP . . . F 2 11.961 6.694 18.089 1 87.89 ? C4' ATP 382 B 1 
HETATM 16 O O4' ATP . . . F 2 11.903 7.225 19.434 1 89.96 ? O4' ATP 382 B 1 
HETATM 17 C C3' ATP . . . F 2 12.839 5.521 17.954 1 90.9 ? C3' ATP 382 B 1 
HETATM 18 O O3' ATP . . . F 2 13.616 5.491 16.765 1 91.91 ? O3' ATP 382 B 1 
HETATM 19 C C2' ATP . . . F 2 13.637 5.529 19.29 1 91.74 ? C2' ATP 382 B 1 
HETATM 20 O O2' ATP . . . F 2 14.978 5.885 19.037 1 94.46 ? O2' ATP 382 B 1 
HETATM 21 C C1' ATP . . . F 2 12.945 6.571 20.225 1 92.51 ? C1' ATP 382 B 1 
HETATM 22 N N9 ATP . . . F 2 12.323 5.988 21.435 1 94.93 ? N9 ATP 382 B 1 
HETATM 23 C C8 ATP . . . F 2 11.07 5.38 21.634 1 95.66 ? C8 ATP 382 B 1 
HETATM 24 N N7 ATP . . . F 2 10.856 4.984 22.851 1 96.81 ? N7 ATP 382 B 1 
HETATM 25 C C5 ATP . . . F 2 12.041 5.349 23.498 1 97.67 ? C5 ATP 382 B 1 
HETATM 26 C C6 ATP . . . F 2 12.507 5.227 24.866 1 98.56 ? C6 ATP 382 B 1 
HETATM 27 N N6 ATP . . . F 2 11.767 4.666 25.81 1 98.61 ? N6 ATP 382 B 1 
HETATM 28 N N1 ATP . . . F 2 13.776 5.711 25.191 1 98.83 ? N1 ATP 382 B 1 
HETATM 29 C C2 ATP . . . F 2 14.552 6.289 24.249 1 98.34 ? C2 ATP 382 B 1 
HETATM 30 N N3 ATP . . . F 2 14.233 6.465 22.945 1 97.77 ? N3 ATP 382 B 1 
HETATM 31 C C4 ATP . . . F 2 12.926 5.961 22.64 1 96.8 ? C4 ATP 382 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           31 
#