data_1Q1Q # _model_server_result.job_id jEjOK_PsQmQRS3w0Shj7hQ _model_server_result.datetime_utc '2024-11-22 22:48:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":352}' # _entry.id 1Q1Q # _exptl.entry_id 1Q1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q1Q _cell.length_a 75.244 _cell.length_b 75.244 _cell.length_c 252.246 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 145 A SER 145 1_555 B NA NA . A NA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc2 A O ALA 148 A ALA 148 1_555 B NA NA . A NA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc3 A O LEU 151 A LEU 151 1_555 B NA NA . A NA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A OD1 ASP 153 A ASP 153 1_555 B NA NA . A NA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 1Q1Q _atom_sites.fract_transf_matrix[1][1] 0.01329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 351 10 NA NA . C 3 A3P A 1 352 300 A3P A3P . D 4 NHE A 1 353 301 NHE NHE . E 4 NHE A 1 354 302 NHE NHE . F 5 HOH A 1 355 1 HOH HOH . F 5 HOH A 2 356 2 HOH HOH . F 5 HOH A 3 357 3 HOH HOH . F 5 HOH A 4 358 4 HOH HOH . F 5 HOH A 5 359 11 HOH HOH . F 5 HOH A 6 360 12 HOH HOH . F 5 HOH A 7 361 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . C 3 23.507 14.813 16.511 1 35.93 ? P1 A3P 352 A 1 HETATM 2 O O1P A3P . . . C 3 22.043 14.839 16.226 1 32.72 ? O1P A3P 352 A 1 HETATM 3 O O2P A3P . . . C 3 23.992 13.426 16.594 1 36.28 ? O2P A3P 352 A 1 HETATM 4 O O3P A3P . . . C 3 24.301 15.559 15.5 1 36.45 ? O3P A3P 352 A 1 HETATM 5 P P2 A3P . . . C 3 21.376 17.371 23.463 1 39.46 ? P2 A3P 352 A 1 HETATM 6 O O4P A3P . . . C 3 20.003 17.139 22.896 1 36.14 ? O4P A3P 352 A 1 HETATM 7 O O5P A3P . . . C 3 21.604 16.511 24.649 1 40.2 ? O5P A3P 352 A 1 HETATM 8 O O6P A3P . . . C 3 21.571 18.799 23.808 1 38.66 ? O6P A3P 352 A 1 HETATM 9 O O5' A3P . . . C 3 22.482 16.981 22.361 1 36.77 ? O5' A3P 352 A 1 HETATM 10 C C5' A3P . . . C 3 22.203 16.09 21.275 1 35.06 ? C5' A3P 352 A 1 HETATM 11 C C4' A3P . . . C 3 23.32 16.148 20.23 1 33.07 ? C4' A3P 352 A 1 HETATM 12 O O4' A3P . . . C 3 24.613 15.97 20.895 1 33 ? O4' A3P 352 A 1 HETATM 13 C C3' A3P . . . C 3 23.248 15.029 19.201 1 34.39 ? C3' A3P 352 A 1 HETATM 14 O O3' A3P . . . C 3 23.75 15.529 17.938 1 34.88 ? O3' A3P 352 A 1 HETATM 15 C C2' A3P . . . C 3 24.106 13.978 19.889 1 34.28 ? C2' A3P 352 A 1 HETATM 16 O O2' A3P . . . C 3 24.532 12.877 19.128 1 36.61 ? O2' A3P 352 A 1 HETATM 17 C C1' A3P . . . C 3 25.267 14.849 20.335 1 33.46 ? C1' A3P 352 A 1 HETATM 18 N N9 A3P . . . C 3 26.149 14.18 21.296 1 33.78 ? N9 A3P 352 A 1 HETATM 19 C C8 A3P . . . C 3 25.847 13.624 22.515 1 34.35 ? C8 A3P 352 A 1 HETATM 20 N N7 A3P . . . C 3 26.868 13.098 23.138 1 34.44 ? N7 A3P 352 A 1 HETATM 21 C C5 A3P . . . C 3 27.916 13.322 22.281 1 34.62 ? C5 A3P 352 A 1 HETATM 22 C C6 A3P . . . C 3 29.302 12.997 22.348 1 36.36 ? C6 A3P 352 A 1 HETATM 23 N N6 A3P . . . C 3 29.853 12.364 23.384 1 38.59 ? N6 A3P 352 A 1 HETATM 24 N N1 A3P . . . C 3 30.108 13.368 21.299 1 36.87 ? N1 A3P 352 A 1 HETATM 25 C C2 A3P . . . C 3 29.561 14.012 20.242 1 36.74 ? C2 A3P 352 A 1 HETATM 26 N N3 A3P . . . C 3 28.257 14.37 20.071 1 35.58 ? N3 A3P 352 A 1 HETATM 27 C C4 A3P . . . C 3 27.491 13.986 21.129 1 33.84 ? C4 A3P 352 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #