data_1Q20
#
_model_server_result.job_id            W3Kk-10XJvqs-kWuvx3JgQ 
_model_server_result.datetime_utc      '2024-11-22 20:20:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":314}' 
#
_entry.id    1Q20 
#
_exptl.entry_id    1Q20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3'-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q20 
_cell.length_a            75.962 
_cell.length_b            75.962 
_cell.length_c            253.623 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 147 A SER 160 1_555 B NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A O ALA 150 A ALA 163 1_555 B NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A O LEU 153 A LEU 166 1_555 B NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 B NA NA . A NA 313 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc5 B NA NA . A NA 313 1_555 E O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                A3P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-3'-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P A3P doub 1 n n 
P1 O2P A3P sing 2 n n 
P1 O3P A3P sing 3 n n 
P1 O3' A3P sing 4 n n 
O2P HOP2 A3P sing 5 n n 
O3P HOP3 A3P sing 6 n n 
P2 O4P A3P doub 7 n n 
P2 O5P A3P sing 8 n n 
P2 O6P A3P sing 9 n n 
P2 O5' A3P sing 10 n n 
O5P HOP5 A3P sing 11 n n 
O6P HOP6 A3P sing 12 n n 
O5' C5' A3P sing 13 n n 
C5' C4' A3P sing 14 n n 
C5' "H5'1" A3P sing 15 n n 
C5' "H5'2" A3P sing 16 n n 
C4' O4' A3P sing 17 n n 
C4' C3' A3P sing 18 n n 
C4' H4' A3P sing 19 n n 
O4' C1' A3P sing 20 n n 
C3' O3' A3P sing 21 n n 
C3' C2' A3P sing 22 n n 
C3' H3' A3P sing 23 n n 
C2' O2' A3P sing 24 n n 
C2' C1' A3P sing 25 n n 
C2' H2' A3P sing 26 n n 
O2' HO2' A3P sing 27 n n 
C1' N9 A3P sing 28 n n 
C1' H1' A3P sing 29 n n 
N9 C8 A3P sing 30 n y 
N9 C4 A3P sing 31 n y 
C8 N7 A3P doub 32 n y 
C8 H8 A3P sing 33 n n 
N7 C5 A3P sing 34 n y 
C5 C6 A3P sing 35 n y 
C5 C4 A3P doub 36 n y 
C6 N6 A3P sing 37 n n 
C6 N1 A3P doub 38 n y 
N6 HN61 A3P sing 39 n n 
N6 HN62 A3P sing 40 n n 
N1 C2 A3P sing 41 n y 
C2 N3 A3P doub 42 n y 
C2 H2 A3P sing 43 n n 
N3 C4 A3P sing 44 n y 
#
_atom_sites.entry_id                     1Q20 
_atom_sites.fract_transf_matrix[1][1]    0.013164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003943 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 313 1 NA NA . 
C 3 A3P A 1 314 302 A3P PAP . 
D 4 PLO A 1 401 401 PLO PRG . 
E 5 HOH A 1 402 1 HOH TIP . 
E 5 HOH A 2 403 2 HOH TIP . 
E 5 HOH A 3 404 3 HOH TIP . 
E 5 HOH A 4 405 4 HOH TIP . 
E 5 HOH A 5 406 5 HOH TIP . 
E 5 HOH A 6 407 6 HOH TIP . 
E 5 HOH A 7 408 7 HOH TIP . 
E 5 HOH A 8 409 8 HOH TIP . 
E 5 HOH A 9 410 9 HOH TIP . 
E 5 HOH A 10 411 10 HOH TIP . 
E 5 HOH A 11 412 11 HOH TIP . 
E 5 HOH A 12 413 12 HOH TIP . 
E 5 HOH A 13 414 13 HOH TIP . 
E 5 HOH A 14 415 14 HOH TIP . 
E 5 HOH A 15 416 15 HOH TIP . 
E 5 HOH A 16 417 16 HOH TIP . 
E 5 HOH A 17 418 17 HOH TIP . 
E 5 HOH A 18 419 18 HOH TIP . 
E 5 HOH A 19 420 19 HOH TIP . 
E 5 HOH A 20 421 20 HOH TIP . 
E 5 HOH A 21 422 21 HOH TIP . 
E 5 HOH A 22 423 22 HOH TIP . 
E 5 HOH A 23 424 23 HOH TIP . 
E 5 HOH A 24 425 24 HOH TIP . 
E 5 HOH A 25 426 25 HOH TIP . 
E 5 HOH A 26 427 26 HOH TIP . 
E 5 HOH A 27 428 27 HOH TIP . 
E 5 HOH A 28 429 28 HOH TIP . 
E 5 HOH A 29 430 29 HOH TIP . 
E 5 HOH A 30 431 30 HOH TIP . 
E 5 HOH A 31 432 31 HOH TIP . 
E 5 HOH A 32 433 32 HOH TIP . 
E 5 HOH A 33 434 33 HOH TIP . 
E 5 HOH A 34 435 34 HOH TIP . 
E 5 HOH A 35 436 35 HOH TIP . 
E 5 HOH A 36 437 36 HOH TIP . 
E 5 HOH A 37 438 37 HOH TIP . 
E 5 HOH A 38 439 38 HOH TIP . 
E 5 HOH A 39 440 39 HOH TIP . 
E 5 HOH A 40 441 40 HOH TIP . 
E 5 HOH A 41 442 41 HOH TIP . 
E 5 HOH A 42 443 42 HOH TIP . 
E 5 HOH A 43 444 43 HOH TIP . 
E 5 HOH A 44 445 44 HOH TIP . 
E 5 HOH A 45 446 45 HOH TIP . 
E 5 HOH A 46 447 46 HOH TIP . 
E 5 HOH A 47 448 47 HOH TIP . 
E 5 HOH A 48 449 48 HOH TIP . 
E 5 HOH A 49 450 49 HOH TIP . 
E 5 HOH A 50 451 50 HOH TIP . 
E 5 HOH A 51 452 51 HOH TIP . 
E 5 HOH A 52 453 52 HOH TIP . 
E 5 HOH A 53 454 53 HOH TIP . 
E 5 HOH A 54 455 54 HOH TIP . 
E 5 HOH A 55 456 55 HOH TIP . 
E 5 HOH A 56 457 56 HOH TIP . 
E 5 HOH A 57 458 57 HOH TIP . 
E 5 HOH A 58 459 58 HOH TIP . 
E 5 HOH A 59 460 59 HOH TIP . 
E 5 HOH A 60 461 60 HOH TIP . 
E 5 HOH A 61 462 61 HOH TIP . 
E 5 HOH A 62 463 62 HOH TIP . 
E 5 HOH A 63 464 63 HOH TIP . 
E 5 HOH A 64 465 64 HOH TIP . 
E 5 HOH A 65 466 65 HOH TIP . 
E 5 HOH A 66 467 66 HOH TIP . 
E 5 HOH A 67 468 67 HOH TIP . 
E 5 HOH A 68 469 68 HOH TIP . 
E 5 HOH A 69 470 69 HOH TIP . 
E 5 HOH A 70 471 70 HOH TIP . 
E 5 HOH A 71 472 71 HOH TIP . 
E 5 HOH A 72 473 72 HOH TIP . 
E 5 HOH A 73 474 73 HOH TIP . 
E 5 HOH A 74 475 74 HOH TIP . 
E 5 HOH A 75 476 75 HOH TIP . 
E 5 HOH A 76 477 76 HOH TIP . 
E 5 HOH A 77 478 77 HOH TIP . 
E 5 HOH A 78 479 78 HOH TIP . 
E 5 HOH A 79 480 79 HOH TIP . 
E 5 HOH A 80 481 80 HOH TIP . 
E 5 HOH A 81 482 81 HOH TIP . 
E 5 HOH A 82 483 82 HOH TIP . 
E 5 HOH A 83 484 83 HOH TIP . 
E 5 HOH A 84 485 84 HOH TIP . 
E 5 HOH A 85 486 85 HOH TIP . 
E 5 HOH A 86 487 86 HOH TIP . 
E 5 HOH A 87 488 87 HOH TIP . 
E 5 HOH A 88 489 88 HOH TIP . 
E 5 HOH A 89 490 89 HOH TIP . 
E 5 HOH A 90 491 90 HOH TIP . 
E 5 HOH A 91 492 91 HOH TIP . 
E 5 HOH A 92 493 92 HOH TIP . 
E 5 HOH A 93 494 93 HOH TIP . 
E 5 HOH A 94 495 94 HOH TIP . 
E 5 HOH A 95 496 95 HOH TIP . 
E 5 HOH A 96 497 96 HOH TIP . 
E 5 HOH A 97 498 97 HOH TIP . 
E 5 HOH A 98 499 98 HOH TIP . 
E 5 HOH A 99 500 99 HOH TIP . 
E 5 HOH A 100 501 100 HOH TIP . 
E 5 HOH A 101 502 101 HOH TIP . 
E 5 HOH A 102 503 102 HOH TIP . 
E 5 HOH A 103 504 103 HOH TIP . 
E 5 HOH A 104 505 104 HOH TIP . 
E 5 HOH A 105 506 105 HOH TIP . 
E 5 HOH A 106 507 106 HOH TIP . 
E 5 HOH A 107 508 107 HOH TIP . 
E 5 HOH A 108 509 109 HOH TIP . 
E 5 HOH A 109 510 110 HOH TIP . 
E 5 HOH A 110 511 111 HOH TIP . 
E 5 HOH A 111 512 112 HOH TIP . 
E 5 HOH A 112 513 113 HOH TIP . 
E 5 HOH A 113 514 114 HOH TIP . 
E 5 HOH A 114 515 115 HOH TIP . 
E 5 HOH A 115 516 116 HOH TIP . 
E 5 HOH A 116 517 117 HOH TIP . 
E 5 HOH A 117 518 118 HOH TIP . 
E 5 HOH A 118 519 119 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 A3P . . . C 3 23.46 14.558 16.657 1 32.22 ? P1 A3P 314 A 1 
HETATM 2 O O1P A3P . . . C 3 21.964 14.479 16.57 1 28.74 ? O1P A3P 314 A 1 
HETATM 3 O O2P A3P . . . C 3 24.073 13.221 16.552 1 30.67 ? O2P A3P 314 A 1 
HETATM 4 O O3P A3P . . . C 3 24.033 15.477 15.666 1 28.47 ? O3P A3P 314 A 1 
HETATM 5 P P2 A3P . . . C 3 21.614 17.048 23.596 1 30.92 ? P2 A3P 314 A 1 
HETATM 6 O O4P A3P . . . C 3 21.863 18.449 24.016 1 29.68 ? O4P A3P 314 A 1 
HETATM 7 O O5P A3P . . . C 3 22.197 16.125 24.575 1 30.55 ? O5P A3P 314 A 1 
HETATM 8 O O6P A3P . . . C 3 20.166 16.784 23.44 1 29.44 ? O6P A3P 314 A 1 
HETATM 9 O O5' A3P . . . C 3 22.331 16.839 22.19 1 28.55 ? O5' A3P 314 A 1 
HETATM 10 C C5' A3P . . . C 3 22.355 15.595 21.492 1 28.92 ? C5' A3P 314 A 1 
HETATM 11 C C4' A3P . . . C 3 23.41 15.689 20.392 1 28.86 ? C4' A3P 314 A 1 
HETATM 12 O O4' A3P . . . C 3 24.729 15.566 21.021 1 29.32 ? O4' A3P 314 A 1 
HETATM 13 C C3' A3P . . . C 3 23.354 14.582 19.349 1 29.29 ? C3' A3P 314 A 1 
HETATM 14 O O3' A3P . . . C 3 23.819 15.135 18.103 1 30.22 ? O3' A3P 314 A 1 
HETATM 15 C C2' A3P . . . C 3 24.277 13.55 19.962 1 30.11 ? C2' A3P 314 A 1 
HETATM 16 O O2' A3P . . . C 3 24.735 12.512 19.126 1 31.24 ? O2' A3P 314 A 1 
HETATM 17 C C1' A3P . . . C 3 25.416 14.471 20.441 1 28.87 ? C1' A3P 314 A 1 
HETATM 18 N N9 A3P . . . C 3 26.275 13.79 21.42 1 28.46 ? N9 A3P 314 A 1 
HETATM 19 C C8 A3P . . . C 3 25.94 13.268 22.658 1 25.78 ? C8 A3P 314 A 1 
HETATM 20 N N7 A3P . . . C 3 26.941 12.707 23.293 1 27.28 ? N7 A3P 314 A 1 
HETATM 21 C C5 A3P . . . C 3 28.007 12.865 22.427 1 24.5 ? C5 A3P 314 A 1 
HETATM 22 C C6 A3P . . . C 3 29.363 12.481 22.504 1 27.67 ? C6 A3P 314 A 1 
HETATM 23 N N6 A3P . . . C 3 29.876 11.829 23.544 1 31.47 ? N6 A3P 314 A 1 
HETATM 24 N N1 A3P . . . C 3 30.186 12.797 21.451 1 29.63 ? N1 A3P 314 A 1 
HETATM 25 C C2 A3P . . . C 3 29.677 13.461 20.376 1 28.18 ? C2 A3P 314 A 1 
HETATM 26 N N3 A3P . . . C 3 28.404 13.872 20.189 1 25.79 ? N3 A3P 314 A 1 
HETATM 27 C C4 A3P . . . C 3 27.618 13.54 21.257 1 25.05 ? C4 A3P 314 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#