data_1Q20
#
_model_server_result.job_id            S6nMAjW5dvJF1b2sorsLCQ 
_model_server_result.datetime_utc      '2024-10-12 04:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1Q20 
#
_exptl.entry_id    1Q20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              316.478 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3BETA)-3-HYDROXYPREGN-5-EN-20-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q20 
_cell.length_a            75.962 
_cell.length_b            75.962 
_cell.length_c            253.623 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 147 A SER 160 1_555 B NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A O ALA 150 A ALA 163 1_555 B NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A O LEU 153 A LEU 166 1_555 B NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 B NA NA . A NA 313 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc5 B NA NA . A NA 313 1_555 E O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C21 H32 O2' 
_chem_comp.formula_weight    316.478 
_chem_comp.id                PLO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3BETA)-3-HYDROXYPREGN-5-EN-20-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PREGNENOLONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLO sing 304 n n 
C1 C10 PLO sing 305 n n 
C1 H11 PLO sing 306 n n 
C1 H12 PLO sing 307 n n 
C2 C3 PLO sing 308 n n 
C2 H21 PLO sing 309 n n 
C2 H22 PLO sing 310 n n 
C3 O3 PLO sing 311 n n 
C3 C4 PLO sing 312 n n 
C3 H3 PLO sing 313 n n 
O3 HO3 PLO sing 314 n n 
C4 C5 PLO sing 315 n n 
C4 H41 PLO sing 316 n n 
C4 H42 PLO sing 317 n n 
C5 C6 PLO doub 318 n n 
C5 C10 PLO sing 319 n n 
C6 C7 PLO sing 320 n n 
C6 H6 PLO sing 321 n n 
C7 C8 PLO sing 322 n n 
C7 H71 PLO sing 323 n n 
C7 H72 PLO sing 324 n n 
C8 C9 PLO sing 325 n n 
C8 C14 PLO sing 326 n n 
C8 H8 PLO sing 327 n n 
C9 C10 PLO sing 328 n n 
C9 C11 PLO sing 329 n n 
C9 H9 PLO sing 330 n n 
C10 C19 PLO sing 331 n n 
C11 C12 PLO sing 332 n n 
C11 H111 PLO sing 333 n n 
C11 H112 PLO sing 334 n n 
C12 C13 PLO sing 335 n n 
C12 H121 PLO sing 336 n n 
C12 H122 PLO sing 337 n n 
C13 C14 PLO sing 338 n n 
C13 C17 PLO sing 339 n n 
C13 C18 PLO sing 340 n n 
C14 C15 PLO sing 341 n n 
C14 H14 PLO sing 342 n n 
C15 C16 PLO sing 343 n n 
C15 H151 PLO sing 344 n n 
C15 H152 PLO sing 345 n n 
C16 C17 PLO sing 346 n n 
C16 H161 PLO sing 347 n n 
C16 H162 PLO sing 348 n n 
C17 C20 PLO sing 349 n n 
C17 H17 PLO sing 350 n n 
C18 H181 PLO sing 351 n n 
C18 H182 PLO sing 352 n n 
C18 H183 PLO sing 353 n n 
C19 H191 PLO sing 354 n n 
C19 H192 PLO sing 355 n n 
C19 H193 PLO sing 356 n n 
C20 C21 PLO sing 357 n n 
C20 O20 PLO doub 358 n n 
C21 H211 PLO sing 359 n n 
C21 H212 PLO sing 360 n n 
C21 H213 PLO sing 361 n n 
#
_atom_sites.entry_id                     1Q20 
_atom_sites.fract_transf_matrix[1][1]    0.013164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003943 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 313 1 NA NA . 
C 3 A3P A 1 314 302 A3P PAP . 
D 4 PLO A 1 401 401 PLO PRG . 
E 5 HOH A 1 402 1 HOH TIP . 
E 5 HOH A 2 403 2 HOH TIP . 
E 5 HOH A 3 404 3 HOH TIP . 
E 5 HOH A 4 405 4 HOH TIP . 
E 5 HOH A 5 406 5 HOH TIP . 
E 5 HOH A 6 407 6 HOH TIP . 
E 5 HOH A 7 408 7 HOH TIP . 
E 5 HOH A 8 409 8 HOH TIP . 
E 5 HOH A 9 410 9 HOH TIP . 
E 5 HOH A 10 411 10 HOH TIP . 
E 5 HOH A 11 412 11 HOH TIP . 
E 5 HOH A 12 413 12 HOH TIP . 
E 5 HOH A 13 414 13 HOH TIP . 
E 5 HOH A 14 415 14 HOH TIP . 
E 5 HOH A 15 416 15 HOH TIP . 
E 5 HOH A 16 417 16 HOH TIP . 
E 5 HOH A 17 418 17 HOH TIP . 
E 5 HOH A 18 419 18 HOH TIP . 
E 5 HOH A 19 420 19 HOH TIP . 
E 5 HOH A 20 421 20 HOH TIP . 
E 5 HOH A 21 422 21 HOH TIP . 
E 5 HOH A 22 423 22 HOH TIP . 
E 5 HOH A 23 424 23 HOH TIP . 
E 5 HOH A 24 425 24 HOH TIP . 
E 5 HOH A 25 426 25 HOH TIP . 
E 5 HOH A 26 427 26 HOH TIP . 
E 5 HOH A 27 428 27 HOH TIP . 
E 5 HOH A 28 429 28 HOH TIP . 
E 5 HOH A 29 430 29 HOH TIP . 
E 5 HOH A 30 431 30 HOH TIP . 
E 5 HOH A 31 432 31 HOH TIP . 
E 5 HOH A 32 433 32 HOH TIP . 
E 5 HOH A 33 434 33 HOH TIP . 
E 5 HOH A 34 435 34 HOH TIP . 
E 5 HOH A 35 436 35 HOH TIP . 
E 5 HOH A 36 437 36 HOH TIP . 
E 5 HOH A 37 438 37 HOH TIP . 
E 5 HOH A 38 439 38 HOH TIP . 
E 5 HOH A 39 440 39 HOH TIP . 
E 5 HOH A 40 441 40 HOH TIP . 
E 5 HOH A 41 442 41 HOH TIP . 
E 5 HOH A 42 443 42 HOH TIP . 
E 5 HOH A 43 444 43 HOH TIP . 
E 5 HOH A 44 445 44 HOH TIP . 
E 5 HOH A 45 446 45 HOH TIP . 
E 5 HOH A 46 447 46 HOH TIP . 
E 5 HOH A 47 448 47 HOH TIP . 
E 5 HOH A 48 449 48 HOH TIP . 
E 5 HOH A 49 450 49 HOH TIP . 
E 5 HOH A 50 451 50 HOH TIP . 
E 5 HOH A 51 452 51 HOH TIP . 
E 5 HOH A 52 453 52 HOH TIP . 
E 5 HOH A 53 454 53 HOH TIP . 
E 5 HOH A 54 455 54 HOH TIP . 
E 5 HOH A 55 456 55 HOH TIP . 
E 5 HOH A 56 457 56 HOH TIP . 
E 5 HOH A 57 458 57 HOH TIP . 
E 5 HOH A 58 459 58 HOH TIP . 
E 5 HOH A 59 460 59 HOH TIP . 
E 5 HOH A 60 461 60 HOH TIP . 
E 5 HOH A 61 462 61 HOH TIP . 
E 5 HOH A 62 463 62 HOH TIP . 
E 5 HOH A 63 464 63 HOH TIP . 
E 5 HOH A 64 465 64 HOH TIP . 
E 5 HOH A 65 466 65 HOH TIP . 
E 5 HOH A 66 467 66 HOH TIP . 
E 5 HOH A 67 468 67 HOH TIP . 
E 5 HOH A 68 469 68 HOH TIP . 
E 5 HOH A 69 470 69 HOH TIP . 
E 5 HOH A 70 471 70 HOH TIP . 
E 5 HOH A 71 472 71 HOH TIP . 
E 5 HOH A 72 473 72 HOH TIP . 
E 5 HOH A 73 474 73 HOH TIP . 
E 5 HOH A 74 475 74 HOH TIP . 
E 5 HOH A 75 476 75 HOH TIP . 
E 5 HOH A 76 477 76 HOH TIP . 
E 5 HOH A 77 478 77 HOH TIP . 
E 5 HOH A 78 479 78 HOH TIP . 
E 5 HOH A 79 480 79 HOH TIP . 
E 5 HOH A 80 481 80 HOH TIP . 
E 5 HOH A 81 482 81 HOH TIP . 
E 5 HOH A 82 483 82 HOH TIP . 
E 5 HOH A 83 484 83 HOH TIP . 
E 5 HOH A 84 485 84 HOH TIP . 
E 5 HOH A 85 486 85 HOH TIP . 
E 5 HOH A 86 487 86 HOH TIP . 
E 5 HOH A 87 488 87 HOH TIP . 
E 5 HOH A 88 489 88 HOH TIP . 
E 5 HOH A 89 490 89 HOH TIP . 
E 5 HOH A 90 491 90 HOH TIP . 
E 5 HOH A 91 492 91 HOH TIP . 
E 5 HOH A 92 493 92 HOH TIP . 
E 5 HOH A 93 494 93 HOH TIP . 
E 5 HOH A 94 495 94 HOH TIP . 
E 5 HOH A 95 496 95 HOH TIP . 
E 5 HOH A 96 497 96 HOH TIP . 
E 5 HOH A 97 498 97 HOH TIP . 
E 5 HOH A 98 499 98 HOH TIP . 
E 5 HOH A 99 500 99 HOH TIP . 
E 5 HOH A 100 501 100 HOH TIP . 
E 5 HOH A 101 502 101 HOH TIP . 
E 5 HOH A 102 503 102 HOH TIP . 
E 5 HOH A 103 504 103 HOH TIP . 
E 5 HOH A 104 505 104 HOH TIP . 
E 5 HOH A 105 506 105 HOH TIP . 
E 5 HOH A 106 507 106 HOH TIP . 
E 5 HOH A 107 508 107 HOH TIP . 
E 5 HOH A 108 509 109 HOH TIP . 
E 5 HOH A 109 510 110 HOH TIP . 
E 5 HOH A 110 511 111 HOH TIP . 
E 5 HOH A 111 512 112 HOH TIP . 
E 5 HOH A 112 513 113 HOH TIP . 
E 5 HOH A 113 514 114 HOH TIP . 
E 5 HOH A 114 515 115 HOH TIP . 
E 5 HOH A 115 516 116 HOH TIP . 
E 5 HOH A 116 517 117 HOH TIP . 
E 5 HOH A 117 518 118 HOH TIP . 
E 5 HOH A 118 519 119 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLO . . . D 4 14.154 16.654 28.817 1 42.87 ? C1 PLO 401 A 1 
HETATM 2 C C2 PLO . . . D 4 15.018 17.435 27.754 1 42.31 ? C2 PLO 401 A 1 
HETATM 3 C C3 PLO . . . D 4 16.403 16.772 27.483 1 44 ? C3 PLO 401 A 1 
HETATM 4 O O3 PLO . . . D 4 17.198 17.492 26.482 1 43.46 ? O3 PLO 401 A 1 
HETATM 5 C C4 PLO . . . D 4 16.267 15.26 27.028 1 43.54 ? C4 PLO 401 A 1 
HETATM 6 C C5 PLO . . . D 4 15.436 14.438 28.038 1 43.29 ? C5 PLO 401 A 1 
HETATM 7 C C6 PLO . . . D 4 15.882 13.028 28.457 1 44.53 ? C6 PLO 401 A 1 
HETATM 8 C C7 PLO . . . D 4 15.078 12.16 29.453 1 44.87 ? C7 PLO 401 A 1 
HETATM 9 C C8 PLO . . . D 4 13.709 12.76 30.034 1 44.45 ? C8 PLO 401 A 1 
HETATM 10 C C9 PLO . . . D 4 13.763 14.316 30.142 1 44.07 ? C9 PLO 401 A 1 
HETATM 11 C C10 PLO . . . D 4 14.045 14.984 28.736 1 42.77 ? C10 PLO 401 A 1 
HETATM 12 C C11 PLO . . . D 4 12.449 14.878 30.743 1 44.36 ? C11 PLO 401 A 1 
HETATM 13 C C12 PLO . . . D 4 12.12 14.247 32.114 1 47.35 ? C12 PLO 401 A 1 
HETATM 14 C C13 PLO . . . D 4 12.021 12.691 32.03 1 47.11 ? C13 PLO 401 A 1 
HETATM 15 C C14 PLO . . . D 4 13.395 12.178 31.433 1 45.94 ? C14 PLO 401 A 1 
HETATM 16 C C15 PLO . . . D 4 13.279 10.647 31.632 1 45.54 ? C15 PLO 401 A 1 
HETATM 17 C C16 PLO . . . D 4 12.687 10.515 33.034 1 47.76 ? C16 PLO 401 A 1 
HETATM 18 C C17 PLO . . . D 4 12.026 11.897 33.401 1 49.02 ? C17 PLO 401 A 1 
HETATM 19 C C18 PLO . . . D 4 10.79 12.275 31.148 1 45.94 ? C18 PLO 401 A 1 
HETATM 20 C C19 PLO . . . D 4 12.893 14.823 27.703 1 43.55 ? C19 PLO 401 A 1 
HETATM 21 C C20 PLO . . . D 4 10.629 11.697 34.052 1 52.06 ? C20 PLO 401 A 1 
HETATM 22 C C21 PLO . . . D 4 9.962 12.919 34.599 1 54.19 ? C21 PLO 401 A 1 
HETATM 23 O O20 PLO . . . D 4 10.075 10.613 34.135 1 55.42 ? O20 PLO 401 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#