data_1Q24 # _model_server_result.job_id wP2dAGC3XCilGLu-IshLKA _model_server_result.datetime_utc '2024-11-20 00:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1Q24 # _exptl.entry_id 1Q24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q24 _cell.length_a 73.286 _cell.length_b 75.387 _cell.length_c 80.377 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD2 ASP 184 A ASP 184 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A OD1 ASP 184 A ASP 184 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc3 D O3G ATP . A ATP 400 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 D O2B ATP . A ATP 400 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1Q24 _atom_sites.fract_transf_matrix[1][1] 0.013645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 402 402 MG MG . D 4 ATP A 1 400 400 ATP ATP . E 5 HOH A 1 403 2 HOH HOH . E 5 HOH A 2 404 4 HOH HOH . E 5 HOH A 3 405 5 HOH HOH . E 5 HOH A 4 406 6 HOH HOH . E 5 HOH A 5 407 8 HOH HOH . E 5 HOH A 6 408 9 HOH HOH . E 5 HOH A 7 409 10 HOH HOH . E 5 HOH A 8 410 11 HOH HOH . E 5 HOH A 9 411 12 HOH HOH . E 5 HOH A 10 412 13 HOH HOH . E 5 HOH A 11 413 14 HOH HOH . E 5 HOH A 12 414 15 HOH HOH . E 5 HOH A 13 415 16 HOH HOH . E 5 HOH A 14 416 17 HOH HOH . E 5 HOH A 15 417 18 HOH HOH . E 5 HOH A 16 418 19 HOH HOH . E 5 HOH A 17 419 20 HOH HOH . E 5 HOH A 18 420 21 HOH HOH . E 5 HOH A 19 421 22 HOH HOH . E 5 HOH A 20 422 24 HOH HOH . E 5 HOH A 21 423 25 HOH HOH . E 5 HOH A 22 424 26 HOH HOH . E 5 HOH A 23 425 28 HOH HOH . E 5 HOH A 24 426 29 HOH HOH . E 5 HOH A 25 427 30 HOH HOH . E 5 HOH A 26 428 31 HOH HOH . E 5 HOH A 27 429 33 HOH HOH . E 5 HOH A 28 430 34 HOH HOH . E 5 HOH A 29 431 35 HOH HOH . E 5 HOH A 30 432 36 HOH HOH . E 5 HOH A 31 433 37 HOH HOH . E 5 HOH A 32 434 38 HOH HOH . E 5 HOH A 33 435 39 HOH HOH . E 5 HOH A 34 436 40 HOH HOH . E 5 HOH A 35 437 41 HOH HOH . E 5 HOH A 36 438 42 HOH HOH . E 5 HOH A 37 439 43 HOH HOH . E 5 HOH A 38 440 44 HOH HOH . E 5 HOH A 39 441 45 HOH HOH . E 5 HOH A 40 442 46 HOH HOH . E 5 HOH A 41 443 47 HOH HOH . E 5 HOH A 42 444 48 HOH HOH . E 5 HOH A 43 445 49 HOH HOH . E 5 HOH A 44 446 50 HOH HOH . E 5 HOH A 45 447 51 HOH HOH . E 5 HOH A 46 448 52 HOH HOH . E 5 HOH A 47 449 53 HOH HOH . E 5 HOH A 48 450 55 HOH HOH . E 5 HOH A 49 451 56 HOH HOH . E 5 HOH A 50 452 57 HOH HOH . E 5 HOH A 51 453 58 HOH HOH . E 5 HOH A 52 454 59 HOH HOH . E 5 HOH A 53 455 60 HOH HOH . E 5 HOH A 54 456 61 HOH HOH . E 5 HOH A 55 457 62 HOH HOH . E 5 HOH A 56 458 63 HOH HOH . E 5 HOH A 57 459 64 HOH HOH . E 5 HOH A 58 460 65 HOH HOH . E 5 HOH A 59 461 67 HOH HOH . E 5 HOH A 60 462 68 HOH HOH . E 5 HOH A 61 463 69 HOH HOH . E 5 HOH A 62 464 70 HOH HOH . E 5 HOH A 63 465 72 HOH HOH . E 5 HOH A 64 466 73 HOH HOH . E 5 HOH A 65 467 74 HOH HOH . E 5 HOH A 66 468 75 HOH HOH . E 5 HOH A 67 469 76 HOH HOH . E 5 HOH A 68 470 77 HOH HOH . E 5 HOH A 69 471 78 HOH HOH . E 5 HOH A 70 472 79 HOH HOH . E 5 HOH A 71 473 80 HOH HOH . E 5 HOH A 72 474 81 HOH HOH . E 5 HOH A 73 475 82 HOH HOH . E 5 HOH A 74 476 83 HOH HOH . E 5 HOH A 75 477 84 HOH HOH . E 5 HOH A 76 478 85 HOH HOH . E 5 HOH A 77 479 87 HOH HOH . E 5 HOH A 78 480 88 HOH HOH . E 5 HOH A 79 481 89 HOH HOH . E 5 HOH A 80 482 90 HOH HOH . E 5 HOH A 81 483 91 HOH HOH . E 5 HOH A 82 484 93 HOH HOH . E 5 HOH A 83 485 94 HOH HOH . E 5 HOH A 84 486 96 HOH HOH . E 5 HOH A 85 487 97 HOH HOH . E 5 HOH A 86 488 98 HOH HOH . E 5 HOH A 87 489 99 HOH HOH . E 5 HOH A 88 490 100 HOH HOH . E 5 HOH A 89 491 101 HOH HOH . E 5 HOH A 90 492 102 HOH HOH . E 5 HOH A 91 493 103 HOH HOH . E 5 HOH A 92 494 104 HOH HOH . E 5 HOH A 93 495 105 HOH HOH . E 5 HOH A 94 496 106 HOH HOH . E 5 HOH A 95 497 107 HOH HOH . E 5 HOH A 96 498 108 HOH HOH . E 5 HOH A 97 499 109 HOH HOH . E 5 HOH A 98 500 110 HOH HOH . E 5 HOH A 99 501 111 HOH HOH . E 5 HOH A 100 502 112 HOH HOH . E 5 HOH A 101 503 113 HOH HOH . E 5 HOH A 102 504 114 HOH HOH . E 5 HOH A 103 505 115 HOH HOH . E 5 HOH A 104 506 116 HOH HOH . E 5 HOH A 105 507 117 HOH HOH . E 5 HOH A 106 508 118 HOH HOH . E 5 HOH A 107 509 119 HOH HOH . E 5 HOH A 108 510 120 HOH HOH . E 5 HOH A 109 511 121 HOH HOH . E 5 HOH A 110 512 122 HOH HOH . E 5 HOH A 111 513 123 HOH HOH . E 5 HOH A 112 514 124 HOH HOH . E 5 HOH A 113 515 125 HOH HOH . E 5 HOH A 114 516 126 HOH HOH . E 5 HOH A 115 517 127 HOH HOH . E 5 HOH A 116 518 128 HOH HOH . E 5 HOH A 117 519 129 HOH HOH . E 5 HOH A 118 520 130 HOH HOH . E 5 HOH A 119 521 131 HOH HOH . E 5 HOH A 120 522 132 HOH HOH . F 5 HOH I 1 25 1 HOH HOH . F 5 HOH I 2 26 3 HOH HOH . F 5 HOH I 3 27 7 HOH HOH . F 5 HOH I 4 28 23 HOH HOH . F 5 HOH I 5 29 27 HOH HOH . F 5 HOH I 6 30 32 HOH HOH . F 5 HOH I 7 31 54 HOH HOH . F 5 HOH I 8 32 66 HOH HOH . F 5 HOH I 9 33 71 HOH HOH . F 5 HOH I 10 34 86 HOH HOH . F 5 HOH I 11 35 92 HOH HOH . F 5 HOH I 12 36 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 15.943 8.231 -0.381 1 24.67 ? PG ATP 400 A 1 HETATM 2 O O1G ATP . . . D 4 15.257 7.017 0.155 1 23.49 ? O1G ATP 400 A 1 HETATM 3 O O2G ATP . . . D 4 17.32 8.433 0.293 1 24.09 ? O2G ATP 400 A 1 HETATM 4 O O3G ATP . . . D 4 16.165 8.081 -1.902 1 23.97 ? O3G ATP 400 A 1 HETATM 5 P PB ATP . . . D 4 14.218 10.414 -0.996 1 21.1 ? PB ATP 400 A 1 HETATM 6 O O1B ATP . . . D 4 14.967 11.679 -1.162 1 22.71 ? O1B ATP 400 A 1 HETATM 7 O O2B ATP . . . D 4 14.013 9.674 -2.337 1 20.52 ? O2B ATP 400 A 1 HETATM 8 O O3B ATP . . . D 4 15.015 9.492 0.04 1 23.31 ? O3B ATP 400 A 1 HETATM 9 P PA ATP . . . D 4 11.753 9.583 0.184 1 20.24 ? PA ATP 400 A 1 HETATM 10 O O1A ATP . . . D 4 10.651 9.448 -0.798 1 20.26 ? O1A ATP 400 A 1 HETATM 11 O O2A ATP . . . D 4 12.44 8.238 0.483 1 19.74 ? O2A ATP 400 A 1 HETATM 12 O O3A ATP . . . D 4 12.808 10.728 -0.275 1 21.81 ? O3A ATP 400 A 1 HETATM 13 O O5' ATP . . . D 4 11.17 10.255 1.524 1 21.96 ? O5' ATP 400 A 1 HETATM 14 C C5' ATP . . . D 4 11.888 10.224 2.739 1 21.37 ? C5' ATP 400 A 1 HETATM 15 C C4' ATP . . . D 4 10.977 9.719 3.849 1 21.34 ? C4' ATP 400 A 1 HETATM 16 O O4' ATP . . . D 4 9.773 10.47 3.935 1 21.28 ? O4' ATP 400 A 1 HETATM 17 C C3' ATP . . . D 4 10.52 8.284 3.657 1 21 ? C3' ATP 400 A 1 HETATM 18 O O3' ATP . . . D 4 11.518 7.342 3.991 1 20.29 ? O3' ATP 400 A 1 HETATM 19 C C2' ATP . . . D 4 9.31 8.281 4.57 1 20.82 ? C2' ATP 400 A 1 HETATM 20 O O2' ATP . . . D 4 9.676 8.145 5.921 1 19.13 ? O2' ATP 400 A 1 HETATM 21 C C1' ATP . . . D 4 8.706 9.659 4.387 1 21.27 ? C1' ATP 400 A 1 HETATM 22 N N9 ATP . . . D 4 7.587 9.629 3.417 1 23.26 ? N9 ATP 400 A 1 HETATM 23 C C8 ATP . . . D 4 7.68 9.595 2.043 1 24.25 ? C8 ATP 400 A 1 HETATM 24 N N7 ATP . . . D 4 6.43 9.574 1.51 1 24.08 ? N7 ATP 400 A 1 HETATM 25 C C5 ATP . . . D 4 5.535 9.591 2.521 1 24.72 ? C5 ATP 400 A 1 HETATM 26 C C6 ATP . . . D 4 4.139 9.585 2.541 1 25.31 ? C6 ATP 400 A 1 HETATM 27 N N6 ATP . . . D 4 3.446 9.593 1.402 1 24.43 ? N6 ATP 400 A 1 HETATM 28 N N1 ATP . . . D 4 3.475 9.608 3.759 1 25.23 ? N1 ATP 400 A 1 HETATM 29 C C2 ATP . . . D 4 4.194 9.629 4.94 1 24.58 ? C2 ATP 400 A 1 HETATM 30 N N3 ATP . . . D 4 5.578 9.643 4.909 1 24.54 ? N3 ATP 400 A 1 HETATM 31 C C4 ATP . . . D 4 6.244 9.625 3.724 1 24.41 ? C4 ATP 400 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #