data_1Q2D # _model_server_result.job_id WjBU2VPToJ1I8b1J4gK_HQ _model_server_result.datetime_utc '2024-11-22 11:34:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1Q2D # _exptl.entry_id 1Q2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Q2D _cell.length_a 64.74 _cell.length_b 64.74 _cell.length_c 96.413 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q2D _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1Q2D _atom_sites.fract_transf_matrix[1][1] 0.015446 _atom_sites.fract_transf_matrix[1][2] 0.008918 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 COA A 1 401 401 COA COA . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 525 525 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 527 HOH HOH . D 4 HOH A 28 528 528 HOH HOH . D 4 HOH A 29 529 529 HOH HOH . D 4 HOH A 30 530 530 HOH HOH . D 4 HOH A 31 531 531 HOH HOH . D 4 HOH A 32 532 532 HOH HOH . D 4 HOH A 33 533 533 HOH HOH . D 4 HOH A 34 534 534 HOH HOH . D 4 HOH A 35 535 535 HOH HOH . D 4 HOH A 36 536 536 HOH HOH . D 4 HOH A 37 537 537 HOH HOH . D 4 HOH A 38 538 538 HOH HOH . D 4 HOH A 39 539 539 HOH HOH . D 4 HOH A 40 540 540 HOH HOH . D 4 HOH A 41 541 541 HOH HOH . D 4 HOH A 42 542 542 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 545 HOH HOH . D 4 HOH A 46 546 546 HOH HOH . D 4 HOH A 47 547 547 HOH HOH . D 4 HOH A 48 548 548 HOH HOH . D 4 HOH A 49 549 549 HOH HOH . D 4 HOH A 50 550 550 HOH HOH . D 4 HOH A 51 551 551 HOH HOH . D 4 HOH A 52 552 552 HOH HOH . D 4 HOH A 53 553 553 HOH HOH . D 4 HOH A 54 554 554 HOH HOH . D 4 HOH A 55 555 555 HOH HOH . D 4 HOH A 56 556 556 HOH HOH . D 4 HOH A 57 557 557 HOH HOH . D 4 HOH A 58 558 558 HOH HOH . D 4 HOH A 59 559 559 HOH HOH . D 4 HOH A 60 560 560 HOH HOH . D 4 HOH A 61 561 561 HOH HOH . D 4 HOH A 62 562 562 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 19.326 27.749 27.228 1 71.61 ? N1A COA 401 A 1 HETATM 2 C C2A COA . . . C 3 19.791 28.693 26.307 1 71.33 ? C2A COA 401 A 1 HETATM 3 N N3A COA . . . C 3 19.084 29.234 25.283 1 71.34 ? N3A COA 401 A 1 HETATM 4 C C4A COA . . . C 3 17.813 28.771 25.206 1 69.93 ? C4A COA 401 A 1 HETATM 5 C C5A COA . . . C 3 17.175 27.811 26.059 1 70.12 ? C5A COA 401 A 1 HETATM 6 C C6A COA . . . C 3 18.027 27.262 27.167 1 70.95 ? C6A COA 401 A 1 HETATM 7 N N6A COA . . . C 3 17.593 26.388 28.016 1 71.49 ? N6A COA 401 A 1 HETATM 8 N N7A COA . . . C 3 15.885 27.577 25.69 1 68.82 ? N7A COA 401 A 1 HETATM 9 C C8A COA . . . C 3 15.688 28.378 24.605 1 68.33 ? C8A COA 401 A 1 HETATM 10 N N9A COA . . . C 3 16.82 29.126 24.263 1 67.73 ? N9A COA 401 A 1 HETATM 11 C C1B COA . . . C 3 16.974 30.144 23.135 1 65.44 ? C1B COA 401 A 1 HETATM 12 C C2B COA . . . C 3 17.904 29.679 22.038 1 65.05 ? C2B COA 401 A 1 HETATM 13 O O2B COA . . . C 3 19.231 29.774 22.505 1 65.6 ? O2B COA 401 A 1 HETATM 14 C C3B COA . . . C 3 17.584 30.65 20.876 1 64.26 ? C3B COA 401 A 1 HETATM 15 O O3B COA . . . C 3 18.249 31.856 20.887 1 67.18 ? O3B COA 401 A 1 HETATM 16 P P3B COA . . . C 3 18.084 32.661 19.406 1 71.4 ? P3B COA 401 A 1 HETATM 17 O O7A COA . . . C 3 18.773 31.725 18.309 1 71.28 ? O7A COA 401 A 1 HETATM 18 O O8A COA . . . C 3 18.891 34.041 19.417 1 71.62 ? O8A COA 401 A 1 HETATM 19 O O9A COA . . . C 3 16.534 32.862 19.089 1 70.61 ? O9A COA 401 A 1 HETATM 20 C C4B COA . . . C 3 16.058 30.693 20.964 1 61.28 ? C4B COA 401 A 1 HETATM 21 O O4B COA . . . C 3 15.718 30.329 22.398 1 63.06 ? O4B COA 401 A 1 HETATM 22 C C5B COA . . . C 3 15.384 29.778 19.961 1 55.03 ? C5B COA 401 A 1 HETATM 23 O O5B COA . . . C 3 14.418 29.005 20.68 1 45.61 ? O5B COA 401 A 1 HETATM 24 P P1A COA . . . C 3 14.117 27.494 20.198 1 37.25 ? P1A COA 401 A 1 HETATM 25 O O1A COA . . . C 3 15.331 26.66 20.464 1 40.7 ? O1A COA 401 A 1 HETATM 26 O O2A COA . . . C 3 13.523 27.446 18.823 1 38.25 ? O2A COA 401 A 1 HETATM 27 O O3A COA . . . C 3 13.096 27.21 21.269 1 34.51 ? O3A COA 401 A 1 HETATM 28 P P2A COA . . . C 3 12.84 26.088 22.396 1 25.78 ? P2A COA 401 A 1 HETATM 29 O O4A COA . . . C 3 13.954 25.996 23.395 1 26.67 ? O4A COA 401 A 1 HETATM 30 O O5A COA . . . C 3 12.517 24.704 21.893 1 26.82 ? O5A COA 401 A 1 HETATM 31 O O6A COA . . . C 3 11.478 26.791 23.009 1 27.41 ? O6A COA 401 A 1 HETATM 32 C CBP COA . . . C 3 10.635 28.314 24.785 1 19.54 ? CBP COA 401 A 1 HETATM 33 C CCP COA . . . C 3 11.513 28.142 23.514 1 22.1 ? CCP COA 401 A 1 HETATM 34 C CDP COA . . . C 3 10.476 29.822 25.198 1 17.4 ? CDP COA 401 A 1 HETATM 35 C CEP COA . . . C 3 9.276 27.717 24.347 1 18.49 ? CEP COA 401 A 1 HETATM 36 C CAP COA . . . C 3 11.391 27.53 25.938 1 17.85 ? CAP COA 401 A 1 HETATM 37 O OAP COA . . . C 3 12.647 28.204 26.256 1 16.21 ? OAP COA 401 A 1 HETATM 38 C C9P COA . . . C 3 10.582 27.392 27.222 1 17.68 ? C9P COA 401 A 1 HETATM 39 O O9P COA . . . C 3 9.676 26.391 27.368 1 18.61 ? O9P COA 401 A 1 HETATM 40 N N8P COA . . . C 3 10.834 28.303 28.133 1 16.54 ? N8P COA 401 A 1 HETATM 41 C C7P COA . . . C 3 10.214 28.37 29.454 1 19.89 ? C7P COA 401 A 1 HETATM 42 C C6P COA . . . C 3 8.747 28.772 29.317 1 20.1 ? C6P COA 401 A 1 HETATM 43 C C5P COA . . . C 3 8.634 30.174 28.791 1 21.42 ? C5P COA 401 A 1 HETATM 44 O O5P COA . . . C 3 9.374 31.136 29.229 1 22.22 ? O5P COA 401 A 1 HETATM 45 N N4P COA . . . C 3 7.714 30.3 27.843 1 18.35 ? N4P COA 401 A 1 HETATM 46 C C3P COA . . . C 3 7.341 31.575 27.079 1 20.1 ? C3P COA 401 A 1 HETATM 47 C C2P COA . . . C 3 6.552 32.463 28.021 1 18.94 ? C2P COA 401 A 1 HETATM 48 S S1P COA . . . C 3 5.021 31.691 28.725 1 24.57 ? S1P COA 401 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #