data_1Q3C
#
_model_server_result.job_id            AGL6GerILb4TOJ7j1NlXIw 
_model_server_result.datetime_utc      '2024-11-01 23:22:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":353}' 
#
_entry.id    1Q3C 
#
_exptl.entry_id    1Q3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q3C 
_cell.length_a            57.779 
_cell.length_b            81.067 
_cell.length_c            169.935 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA,PQS tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 184 A HIS 184 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc2 A OD1 ASP 195 A ASP 195 2_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
metalc ? metalc3 A OD2 ASP 195 A ASP 195 2_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc4 A NE2 HIS 199 A HIS 199 2_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc5 A NE2 HIS 220 A HIS 220 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc6 A SG CYS 237 A CYS 237 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc7 A SG CYS 240 A CYS 240 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc8 A SG CYS 257 A CYS 257 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc9 A SG CYS 260 A CYS 260 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc10 A O HIS 262 A HIS 262 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc11 A OXT HIS 262 A HIS 262 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? 
metalc ? metalc12 A NE2 HIS 262 A HIS 262 3_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc13 C MG MG . A MG 302 1_555 H O HOH . A HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc14 D MG MG . A MG 303 1_555 H O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1Q3C 
_atom_sites.fract_transf_matrix[1][1]    0.017307 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN2 . 
C 3 MG A 1 302 302 MG MG2 . 
D 3 MG A 1 303 303 MG MG2 . 
E 4 GOL A 1 351 351 GOL GOL . 
F 4 GOL A 1 352 352 GOL GOL . 
G 4 GOL A 1 353 353 GOL GOL . 
H 5 HOH A 1 401 401 HOH WAT . 
H 5 HOH A 2 402 402 HOH WAT . 
H 5 HOH A 3 403 403 HOH WAT . 
H 5 HOH A 4 404 404 HOH WAT . 
H 5 HOH A 5 405 405 HOH WAT . 
H 5 HOH A 6 406 406 HOH WAT . 
H 5 HOH A 7 407 407 HOH WAT . 
H 5 HOH A 8 408 408 HOH WAT . 
H 5 HOH A 9 409 409 HOH WAT . 
H 5 HOH A 10 410 410 HOH WAT . 
H 5 HOH A 11 411 411 HOH WAT . 
H 5 HOH A 12 412 412 HOH WAT . 
H 5 HOH A 13 413 413 HOH WAT . 
H 5 HOH A 14 414 414 HOH WAT . 
H 5 HOH A 15 415 415 HOH WAT . 
H 5 HOH A 16 416 416 HOH WAT . 
H 5 HOH A 17 417 417 HOH WAT . 
H 5 HOH A 18 418 418 HOH WAT . 
H 5 HOH A 19 419 419 HOH WAT . 
H 5 HOH A 20 420 420 HOH WAT . 
H 5 HOH A 21 421 421 HOH WAT . 
H 5 HOH A 22 422 422 HOH WAT . 
H 5 HOH A 23 423 423 HOH WAT . 
H 5 HOH A 24 424 424 HOH WAT . 
H 5 HOH A 25 425 425 HOH WAT . 
H 5 HOH A 26 426 426 HOH WAT . 
H 5 HOH A 27 427 427 HOH WAT . 
H 5 HOH A 28 428 428 HOH WAT . 
H 5 HOH A 29 429 429 HOH WAT . 
H 5 HOH A 30 430 430 HOH WAT . 
H 5 HOH A 31 431 431 HOH WAT . 
H 5 HOH A 32 432 432 HOH WAT . 
H 5 HOH A 33 433 433 HOH WAT . 
H 5 HOH A 34 435 435 HOH WAT . 
H 5 HOH A 35 436 436 HOH WAT . 
H 5 HOH A 36 437 437 HOH WAT . 
H 5 HOH A 37 438 438 HOH WAT . 
H 5 HOH A 38 439 439 HOH WAT . 
H 5 HOH A 39 440 440 HOH WAT . 
H 5 HOH A 40 441 441 HOH WAT . 
H 5 HOH A 41 442 442 HOH WAT . 
H 5 HOH A 42 443 443 HOH WAT . 
H 5 HOH A 43 444 444 HOH WAT . 
H 5 HOH A 44 445 445 HOH WAT . 
H 5 HOH A 45 446 446 HOH WAT . 
H 5 HOH A 46 448 448 HOH WAT . 
H 5 HOH A 47 449 449 HOH WAT . 
H 5 HOH A 48 451 451 HOH WAT . 
H 5 HOH A 49 452 452 HOH WAT . 
H 5 HOH A 50 453 453 HOH WAT . 
H 5 HOH A 51 454 454 HOH WAT . 
H 5 HOH A 52 455 455 HOH WAT . 
H 5 HOH A 53 456 456 HOH WAT . 
H 5 HOH A 54 457 457 HOH WAT . 
H 5 HOH A 55 458 458 HOH WAT . 
H 5 HOH A 56 459 459 HOH WAT . 
H 5 HOH A 57 460 460 HOH WAT . 
H 5 HOH A 58 461 461 HOH WAT . 
H 5 HOH A 59 462 462 HOH WAT . 
H 5 HOH A 60 464 464 HOH WAT . 
H 5 HOH A 61 465 465 HOH WAT . 
H 5 HOH A 62 466 466 HOH WAT . 
H 5 HOH A 63 467 467 HOH WAT . 
H 5 HOH A 64 469 469 HOH WAT . 
H 5 HOH A 65 470 470 HOH WAT . 
H 5 HOH A 66 471 471 HOH WAT . 
H 5 HOH A 67 472 472 HOH WAT . 
H 5 HOH A 68 473 473 HOH WAT . 
H 5 HOH A 69 474 474 HOH WAT . 
H 5 HOH A 70 475 475 HOH WAT . 
H 5 HOH A 71 476 476 HOH WAT . 
H 5 HOH A 72 477 477 HOH WAT . 
H 5 HOH A 73 478 478 HOH WAT . 
H 5 HOH A 74 479 479 HOH WAT . 
H 5 HOH A 75 480 480 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 12.353 15.77 20.217 0.5 90.67 ? C1 GOL 353 A 1 
HETATM 2 O O1 GOL . . . G 4 13.232 16.714 20.811 0.5 90.74 ? O1 GOL 353 A 1 
HETATM 3 C C2 GOL . . . G 4 12.845 14.311 20.503 0.5 90.15 ? C2 GOL 353 A 1 
HETATM 4 O O2 GOL . . . G 4 12.932 14.023 21.887 0.5 90.63 ? O2 GOL 353 A 1 
HETATM 5 C C3 GOL . . . G 4 14.237 14.01 19.852 0.5 89.79 ? C3 GOL 353 A 1 
HETATM 6 O O3 GOL . . . G 4 14.122 13.433 18.566 0.5 88.07 ? O3 GOL 353 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#