data_1Q3D # _model_server_result.job_id kjmwnphuaIrly95JoP4KMA _model_server_result.datetime_utc '2024-11-26 08:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":452}' # _entry.id 1Q3D # _exptl.entry_id 1Q3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q3D _cell.length_a 83.726 _cell.length_b 87.05 _cell.length_c 177.805 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 290 n n O4 C21 STU sing 291 n n C25 C24 STU sing 292 n n C25 N3 STU sing 293 n n C25 H25 STU sing 294 n n C24 C23 STU sing 295 n n C24 H241 STU sing 296 n n C24 H242 STU sing 297 n n C23 C22 STU sing 298 n n C23 N4 STU sing 299 n n C23 H23 STU sing 300 n n C22 C21 STU sing 301 n n C22 O6 STU sing 302 n n C22 H22 STU sing 303 n n C21 C26 STU sing 304 n n C21 N2 STU sing 305 n n C26 H261 STU sing 306 n n C26 H262 STU sing 307 n n C26 H263 STU sing 308 n n N2 C18 STU sing 309 n y N2 C17 STU sing 310 n y C18 C19 STU doub 311 n y C18 C11 STU sing 312 n y C19 C6 STU sing 313 n y C19 N3 STU sing 314 n y C6 C7 STU doub 315 n y C6 C5 STU sing 316 n y C7 C10 STU sing 317 n y C7 C8 STU sing 318 n n C10 C11 STU doub 319 n y C10 C9 STU sing 320 n n C11 C12 STU sing 321 n y C12 C17 STU doub 322 n y C12 C13 STU sing 323 n y C17 C16 STU sing 324 n y C16 C15 STU doub 325 n y C16 H16 STU sing 326 n n C15 C14 STU sing 327 n y C15 H15 STU sing 328 n n C14 C13 STU doub 329 n y C14 H14 STU sing 330 n n C13 H13 STU sing 331 n n C9 N1 STU sing 332 n n C9 H91 STU sing 333 n n C9 H92 STU sing 334 n n N1 C8 STU sing 335 n n N1 HN1 STU sing 336 n n C8 O5 STU doub 337 n n C5 C20 STU doub 338 n y C5 C4 STU sing 339 n y C20 C1 STU sing 340 n y C20 N3 STU sing 341 n y C1 C2 STU doub 342 n y C1 H1 STU sing 343 n n C2 C3 STU sing 344 n y C2 H2 STU sing 345 n n C3 C4 STU doub 346 n y C3 H3 STU sing 347 n n C4 H4 STU sing 348 n n O6 C27 STU sing 349 n n C27 H271 STU sing 350 n n C27 H272 STU sing 351 n n C27 H273 STU sing 352 n n N4 C28 STU sing 353 n n N4 HN4 STU sing 354 n n C28 H281 STU sing 355 n n C28 H282 STU sing 356 n n C28 H283 STU sing 357 n n # _atom_sites.entry_id 1Q3D _atom_sites.fract_transf_matrix[1][1] 0.011944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STU A 1 451 451 STU STU . D 2 STU B 1 452 452 STU STU . E 3 HOH A 1 501 501 HOH WAT . E 3 HOH A 2 502 502 HOH WAT . E 3 HOH A 3 504 504 HOH WAT . E 3 HOH A 4 506 506 HOH WAT . E 3 HOH A 5 514 514 HOH WAT . E 3 HOH A 6 519 519 HOH WAT . E 3 HOH A 7 520 520 HOH WAT . E 3 HOH A 8 521 521 HOH WAT . E 3 HOH A 9 523 523 HOH WAT . E 3 HOH A 10 527 527 HOH WAT . E 3 HOH A 11 529 529 HOH WAT . E 3 HOH A 12 531 531 HOH WAT . E 3 HOH A 13 532 532 HOH WAT . E 3 HOH A 14 533 533 HOH WAT . E 3 HOH A 15 537 537 HOH WAT . E 3 HOH A 16 538 538 HOH WAT . E 3 HOH A 17 542 542 HOH WAT . E 3 HOH A 18 543 543 HOH WAT . E 3 HOH A 19 547 547 HOH WAT . E 3 HOH A 20 548 548 HOH WAT . E 3 HOH A 21 550 550 HOH WAT . E 3 HOH A 22 553 553 HOH WAT . E 3 HOH A 23 554 554 HOH WAT . E 3 HOH A 24 555 555 HOH WAT . E 3 HOH A 25 556 556 HOH WAT . E 3 HOH A 26 559 559 HOH WAT . E 3 HOH A 27 561 561 HOH WAT . E 3 HOH A 28 562 562 HOH WAT . E 3 HOH A 29 563 563 HOH WAT . E 3 HOH A 30 564 564 HOH WAT . E 3 HOH A 31 565 565 HOH WAT . E 3 HOH A 32 569 569 HOH WAT . E 3 HOH A 33 572 572 HOH WAT . E 3 HOH A 34 577 577 HOH WAT . E 3 HOH A 35 580 580 HOH WAT . E 3 HOH A 36 586 586 HOH WAT . E 3 HOH A 37 587 587 HOH WAT . E 3 HOH A 38 589 589 HOH WAT . E 3 HOH A 39 591 591 HOH WAT . E 3 HOH A 40 592 592 HOH WAT . E 3 HOH A 41 596 596 HOH WAT . E 3 HOH A 42 597 597 HOH WAT . E 3 HOH A 43 601 601 HOH WAT . E 3 HOH A 44 602 602 HOH WAT . E 3 HOH A 45 604 604 HOH WAT . E 3 HOH A 46 607 607 HOH WAT . E 3 HOH A 47 608 608 HOH WAT . E 3 HOH A 48 609 609 HOH WAT . E 3 HOH A 49 611 611 HOH WAT . E 3 HOH A 50 612 612 HOH WAT . E 3 HOH A 51 613 613 HOH WAT . E 3 HOH A 52 614 614 HOH WAT . E 3 HOH A 53 615 615 HOH WAT . E 3 HOH A 54 616 616 HOH WAT . E 3 HOH A 55 631 631 HOH WAT . E 3 HOH A 56 632 632 HOH WAT . E 3 HOH A 57 633 633 HOH WAT . E 3 HOH A 58 634 634 HOH WAT . E 3 HOH A 59 635 635 HOH WAT . E 3 HOH A 60 636 636 HOH WAT . E 3 HOH A 61 637 637 HOH WAT . E 3 HOH A 62 638 638 HOH WAT . E 3 HOH A 63 639 639 HOH WAT . E 3 HOH A 64 640 640 HOH WAT . E 3 HOH A 65 650 650 HOH WAT . E 3 HOH A 66 651 651 HOH WAT . E 3 HOH A 67 653 653 HOH WAT . E 3 HOH A 68 654 654 HOH WAT . E 3 HOH A 69 655 655 HOH WAT . E 3 HOH A 70 656 656 HOH WAT . E 3 HOH A 71 657 657 HOH WAT . F 3 HOH B 1 503 503 HOH WAT . F 3 HOH B 2 505 505 HOH WAT . F 3 HOH B 3 507 507 HOH WAT . F 3 HOH B 4 508 508 HOH WAT . F 3 HOH B 5 509 509 HOH WAT . F 3 HOH B 6 510 510 HOH WAT . F 3 HOH B 7 511 511 HOH WAT . F 3 HOH B 8 512 512 HOH WAT . F 3 HOH B 9 513 513 HOH WAT . F 3 HOH B 10 515 515 HOH WAT . F 3 HOH B 11 516 516 HOH WAT . F 3 HOH B 12 517 517 HOH WAT . F 3 HOH B 13 518 518 HOH WAT . F 3 HOH B 14 522 522 HOH WAT . F 3 HOH B 15 524 524 HOH WAT . F 3 HOH B 16 525 525 HOH WAT . F 3 HOH B 17 526 526 HOH WAT . F 3 HOH B 18 528 528 HOH WAT . F 3 HOH B 19 530 530 HOH WAT . F 3 HOH B 20 534 534 HOH WAT . F 3 HOH B 21 535 535 HOH WAT . F 3 HOH B 22 536 536 HOH WAT . F 3 HOH B 23 539 539 HOH WAT . F 3 HOH B 24 540 540 HOH WAT . F 3 HOH B 25 541 541 HOH WAT . F 3 HOH B 26 544 544 HOH WAT . F 3 HOH B 27 545 545 HOH WAT . F 3 HOH B 28 546 546 HOH WAT . F 3 HOH B 29 549 549 HOH WAT . F 3 HOH B 30 551 551 HOH WAT . F 3 HOH B 31 552 552 HOH WAT . F 3 HOH B 32 557 557 HOH WAT . F 3 HOH B 33 558 558 HOH WAT . F 3 HOH B 34 560 560 HOH WAT . F 3 HOH B 35 566 566 HOH WAT . F 3 HOH B 36 568 568 HOH WAT . F 3 HOH B 37 570 570 HOH WAT . F 3 HOH B 38 571 571 HOH WAT . F 3 HOH B 39 573 573 HOH WAT . F 3 HOH B 40 574 574 HOH WAT . F 3 HOH B 41 575 575 HOH WAT . F 3 HOH B 42 576 576 HOH WAT . F 3 HOH B 43 578 578 HOH WAT . F 3 HOH B 44 579 579 HOH WAT . F 3 HOH B 45 581 581 HOH WAT . F 3 HOH B 46 582 582 HOH WAT . F 3 HOH B 47 583 583 HOH WAT . F 3 HOH B 48 584 584 HOH WAT . F 3 HOH B 49 585 585 HOH WAT . F 3 HOH B 50 588 588 HOH WAT . F 3 HOH B 51 590 590 HOH WAT . F 3 HOH B 52 593 593 HOH WAT . F 3 HOH B 53 594 594 HOH WAT . F 3 HOH B 54 595 595 HOH WAT . F 3 HOH B 55 598 598 HOH WAT . F 3 HOH B 56 599 599 HOH WAT . F 3 HOH B 57 600 600 HOH WAT . F 3 HOH B 58 603 603 HOH WAT . F 3 HOH B 59 605 605 HOH WAT . F 3 HOH B 60 606 606 HOH WAT . F 3 HOH B 61 610 610 HOH WAT . F 3 HOH B 62 617 617 HOH WAT . F 3 HOH B 63 618 618 HOH WAT . F 3 HOH B 64 619 619 HOH WAT . F 3 HOH B 65 620 620 HOH WAT . F 3 HOH B 66 621 621 HOH WAT . F 3 HOH B 67 622 622 HOH WAT . F 3 HOH B 68 623 623 HOH WAT . F 3 HOH B 69 624 624 HOH WAT . F 3 HOH B 70 625 625 HOH WAT . F 3 HOH B 71 626 626 HOH WAT . F 3 HOH B 72 627 627 HOH WAT . F 3 HOH B 73 628 628 HOH WAT . F 3 HOH B 74 629 629 HOH WAT . F 3 HOH B 75 630 630 HOH WAT . F 3 HOH B 76 641 641 HOH WAT . F 3 HOH B 77 642 642 HOH WAT . F 3 HOH B 78 643 643 HOH WAT . F 3 HOH B 79 644 644 HOH WAT . F 3 HOH B 80 645 645 HOH WAT . F 3 HOH B 81 646 646 HOH WAT . F 3 HOH B 82 647 647 HOH WAT . F 3 HOH B 83 648 648 HOH WAT . F 3 HOH B 84 649 649 HOH WAT . F 3 HOH B 85 652 652 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . D 2 21.444 -18.169 13.511 1 33.54 ? O4 STU 452 B 1 HETATM 2 C C25 STU . . . D 2 22.754 -18.448 13.06 1 33.56 ? C25 STU 452 B 1 HETATM 3 C C24 STU . . . D 2 23.815 -17.373 13.412 1 31.33 ? C24 STU 452 B 1 HETATM 4 C C23 STU . . . D 2 23.266 -15.993 13.873 1 34.18 ? C23 STU 452 B 1 HETATM 5 C C22 STU . . . D 2 21.956 -15.72 13.034 1 31.55 ? C22 STU 452 B 1 HETATM 6 C C21 STU . . . D 2 20.86 -16.859 13.165 1 32.52 ? C21 STU 452 B 1 HETATM 7 C C26 STU . . . D 2 20.036 -16.58 14.436 1 31.16 ? C26 STU 452 B 1 HETATM 8 N N2 STU . . . D 2 20.065 -17.057 11.896 1 32.23 ? N2 STU 452 B 1 HETATM 9 C C18 STU . . . D 2 20.462 -17.884 10.87 1 32.54 ? C18 STU 452 B 1 HETATM 10 C C19 STU . . . D 2 21.669 -18.703 10.742 1 32.8 ? C19 STU 452 B 1 HETATM 11 C C6 STU . . . D 2 21.98 -19.388 9.53 1 32.32 ? C6 STU 452 B 1 HETATM 12 C C7 STU . . . D 2 21.036 -19.277 8.439 1 31.62 ? C7 STU 452 B 1 HETATM 13 C C10 STU . . . D 2 19.868 -18.517 8.573 1 30.57 ? C10 STU 452 B 1 HETATM 14 C C11 STU . . . D 2 19.571 -17.799 9.777 1 31.26 ? C11 STU 452 B 1 HETATM 15 C C12 STU . . . D 2 18.546 -16.867 10.158 1 32.18 ? C12 STU 452 B 1 HETATM 16 C C17 STU . . . D 2 18.865 -16.406 11.474 1 32.53 ? C17 STU 452 B 1 HETATM 17 C C16 STU . . . D 2 18.006 -15.415 12.114 1 30.88 ? C16 STU 452 B 1 HETATM 18 C C15 STU . . . D 2 16.861 -14.924 11.415 1 30.91 ? C15 STU 452 B 1 HETATM 19 C C14 STU . . . D 2 16.527 -15.386 10.09 1 29.07 ? C14 STU 452 B 1 HETATM 20 C C13 STU . . . D 2 17.356 -16.358 9.448 1 31.65 ? C13 STU 452 B 1 HETATM 21 C C9 STU . . . D 2 19.056 -18.681 7.302 1 31.43 ? C9 STU 452 B 1 HETATM 22 N N1 STU . . . D 2 20.004 -19.266 6.428 1 33.4 ? N1 STU 452 B 1 HETATM 23 C C8 STU . . . D 2 21.053 -19.827 7.089 1 32.01 ? C8 STU 452 B 1 HETATM 24 O O5 STU . . . D 2 21.87 -20.645 6.639 1 35.44 ? O5 STU 452 B 1 HETATM 25 C C5 STU . . . D 2 23.221 -20.055 9.726 1 30.3 ? C5 STU 452 B 1 HETATM 26 C C20 STU . . . D 2 23.608 -19.799 11.077 1 32.09 ? C20 STU 452 B 1 HETATM 27 C C1 STU . . . D 2 24.824 -20.296 11.708 1 31.85 ? C1 STU 452 B 1 HETATM 28 C C2 STU . . . D 2 25.619 -21.066 10.827 1 30.87 ? C2 STU 452 B 1 HETATM 29 C C3 STU . . . D 2 25.275 -21.333 9.467 1 32.56 ? C3 STU 452 B 1 HETATM 30 C C4 STU . . . D 2 24.07 -20.849 8.851 1 32.73 ? C4 STU 452 B 1 HETATM 31 N N3 STU . . . D 2 22.637 -18.957 11.679 1 32.29 ? N3 STU 452 B 1 HETATM 32 O O6 STU . . . D 2 22.401 -15.759 11.656 1 34.68 ? O6 STU 452 B 1 HETATM 33 C C27 STU . . . D 2 22.08 -14.613 10.839 1 32.29 ? C27 STU 452 B 1 HETATM 34 N N4 STU . . . D 2 24.191 -14.808 13.801 1 38.45 ? N4 STU 452 B 1 HETATM 35 C C28 STU . . . D 2 23.571 -13.488 14.238 1 41.3 ? C28 STU 452 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #