data_1Q3I
#
_model_server_result.job_id            bBDjdZaerSZQk8_EgvUywg 
_model_server_result.datetime_utc      '2024-11-12 19:41:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q3i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    1Q3I 
#
_exptl.entry_id    1Q3I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q3I 
_cell.length_a            147.31 
_cell.length_b            147.31 
_cell.length_c            147.31 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q3I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        196 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA,PQS trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
3 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O HOH . A HOH 81 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc2 A NE2 HIS 6 A HIS 383 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc3 A OE1 GLU 15 A GLU 392 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc4 A NE2 HIS 209 A HIS 587 1_555 D NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc5 A NE2 HIS 209 A HIS 587 8_555 D NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc6 A NE2 HIS 209 A HIS 587 11_555 D NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc7 A NE2 HIS 210 A HIS 588 8_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc8 A NE2 HIS 211 A HIS 589 1_555 D NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc9 A NE2 HIS 211 A HIS 589 8_555 D NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc10 A NE2 HIS 211 A HIS 589 11_555 D NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc11 A NE2 HIS 212 A HIS 590 1_555 B NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc12 A NE2 HIS 212 A HIS 590 8_555 B NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc13 A NE2 HIS 212 A HIS 590 11_555 B NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc14 A NE2 HIS 213 A HIS 591 8_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc15 A NE2 HIS 214 A HIS 592 1_555 B NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc16 A NE2 HIS 214 A HIS 592 11_555 B NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc17 A NE2 HIS 214 A HIS 592 8_555 B NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1Q3I 
_atom_sites.fract_transf_matrix[1][1]    0.006788 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006788 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 601 601 NI NI2 . 
C 2 NI A 1 602 602 NI NI2 . 
D 2 NI A 1 603 603 NI NI2 . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
E 3 HOH A 3 3 3 HOH HOH . 
E 3 HOH A 4 4 4 HOH HOH . 
E 3 HOH A 5 5 5 HOH HOH . 
E 3 HOH A 6 6 6 HOH HOH . 
E 3 HOH A 7 7 7 HOH HOH . 
E 3 HOH A 8 8 8 HOH HOH . 
E 3 HOH A 9 9 9 HOH HOH . 
E 3 HOH A 10 10 10 HOH HOH . 
E 3 HOH A 11 11 11 HOH HOH . 
E 3 HOH A 12 12 12 HOH HOH . 
E 3 HOH A 13 13 13 HOH HOH . 
E 3 HOH A 14 14 14 HOH HOH . 
E 3 HOH A 15 15 15 HOH HOH . 
E 3 HOH A 16 16 16 HOH HOH . 
E 3 HOH A 17 17 17 HOH HOH . 
E 3 HOH A 18 18 18 HOH HOH . 
E 3 HOH A 19 19 19 HOH HOH . 
E 3 HOH A 20 20 20 HOH HOH . 
E 3 HOH A 21 21 21 HOH HOH . 
E 3 HOH A 22 22 22 HOH HOH . 
E 3 HOH A 23 23 23 HOH HOH . 
E 3 HOH A 24 24 24 HOH HOH . 
E 3 HOH A 25 25 25 HOH HOH . 
E 3 HOH A 26 26 26 HOH HOH . 
E 3 HOH A 27 27 27 HOH HOH . 
E 3 HOH A 28 28 28 HOH HOH . 
E 3 HOH A 29 29 29 HOH HOH . 
E 3 HOH A 30 30 30 HOH HOH . 
E 3 HOH A 31 31 31 HOH HOH . 
E 3 HOH A 32 32 32 HOH HOH . 
E 3 HOH A 33 33 33 HOH HOH . 
E 3 HOH A 34 34 34 HOH HOH . 
E 3 HOH A 35 35 35 HOH HOH . 
E 3 HOH A 36 36 36 HOH HOH . 
E 3 HOH A 37 37 37 HOH HOH . 
E 3 HOH A 38 38 38 HOH HOH . 
E 3 HOH A 39 39 39 HOH HOH . 
E 3 HOH A 40 40 40 HOH HOH . 
E 3 HOH A 41 41 41 HOH HOH . 
E 3 HOH A 42 43 43 HOH HOH . 
E 3 HOH A 43 44 44 HOH HOH . 
E 3 HOH A 44 45 45 HOH HOH . 
E 3 HOH A 45 46 46 HOH HOH . 
E 3 HOH A 46 47 47 HOH HOH . 
E 3 HOH A 47 48 48 HOH HOH . 
E 3 HOH A 48 49 49 HOH HOH . 
E 3 HOH A 49 50 50 HOH HOH . 
E 3 HOH A 50 51 51 HOH HOH . 
E 3 HOH A 51 52 52 HOH HOH . 
E 3 HOH A 52 53 53 HOH HOH . 
E 3 HOH A 53 54 54 HOH HOH . 
E 3 HOH A 54 55 55 HOH HOH . 
E 3 HOH A 55 56 56 HOH HOH . 
E 3 HOH A 56 57 57 HOH HOH . 
E 3 HOH A 57 58 58 HOH HOH . 
E 3 HOH A 58 59 59 HOH HOH . 
E 3 HOH A 59 60 60 HOH HOH . 
E 3 HOH A 60 61 61 HOH HOH . 
E 3 HOH A 61 62 62 HOH HOH . 
E 3 HOH A 62 63 63 HOH HOH . 
E 3 HOH A 63 64 64 HOH HOH . 
E 3 HOH A 64 65 65 HOH HOH . 
E 3 HOH A 65 66 66 HOH HOH . 
E 3 HOH A 66 67 67 HOH HOH . 
E 3 HOH A 67 68 68 HOH HOH . 
E 3 HOH A 68 69 69 HOH HOH . 
E 3 HOH A 69 70 70 HOH HOH . 
E 3 HOH A 70 71 71 HOH HOH . 
E 3 HOH A 71 72 72 HOH HOH . 
E 3 HOH A 72 73 73 HOH HOH . 
E 3 HOH A 73 74 74 HOH HOH . 
E 3 HOH A 74 75 75 HOH HOH . 
E 3 HOH A 75 76 76 HOH HOH . 
E 3 HOH A 76 77 77 HOH HOH . 
E 3 HOH A 77 78 78 HOH HOH . 
E 3 HOH A 78 79 79 HOH HOH . 
E 3 HOH A 79 80 80 HOH HOH . 
E 3 HOH A 80 81 81 HOH HOH . 
E 3 HOH A 81 82 82 HOH HOH . 
E 3 HOH A 82 83 83 HOH HOH . 
E 3 HOH A 83 84 84 HOH HOH . 
E 3 HOH A 84 85 85 HOH HOH . 
E 3 HOH A 85 86 86 HOH HOH . 
E 3 HOH A 86 87 87 HOH HOH . 
E 3 HOH A 87 88 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.794 
_atom_site.Cartn_y               25.794 
_atom_site.Cartn_z               -25.794 
_atom_site.occupancy             0.33 
_atom_site.B_iso_or_equiv        31 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#