data_1Q41 # _model_server_result.job_id fhKH-WLHZYVrSU3CohBbTA _model_server_result.datetime_utc '2024-11-29 13:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":452}' # _entry.id 1Q41 # _exptl.entry_id 1Q41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.277 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q41 _cell.length_a 83.438 _cell.length_b 86.443 _cell.length_c 178.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H11 N3 O2' _chem_comp.formula_weight 277.277 _chem_comp.id IXM _chem_comp.mon_nstd_flag . _chem_comp.name "(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "INDIRUBIN-3'-MONOXIME" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IXM sing 173 n n C1 C3 IXM doub 174 n y C1 C11 IXM sing 175 n y C2 C13 IXM sing 176 n n C2 N24 IXM doub 177 e n C3 N4 IXM sing 178 n n C3 C5 IXM sing 179 n y N4 C13 IXM sing 180 n n N4 HN4 IXM sing 181 n n C5 C7 IXM doub 182 n y C5 HC5 IXM sing 183 n n C7 C9 IXM sing 184 n y C7 HC7 IXM sing 185 n n C9 C11 IXM doub 186 n y C9 HC9 IXM sing 187 n n C11 H11 IXM sing 188 n n C13 C14 IXM doub 189 z n C14 C15 IXM sing 190 n n C14 C18 IXM sing 191 n n C15 N16 IXM sing 192 n n C15 O23 IXM doub 193 n n N16 C17 IXM sing 194 n n N16 H16 IXM sing 195 n n C17 C18 IXM doub 196 n y C17 C19 IXM sing 197 n y C18 C22 IXM sing 198 n y C19 C20 IXM doub 199 n y C19 H19 IXM sing 200 n n C20 C21 IXM sing 201 n y C20 H20 IXM sing 202 n n C21 C22 IXM doub 203 n y C21 H21 IXM sing 204 n n C22 H22 IXM sing 205 n n N24 O39 IXM sing 206 n n O39 H39 IXM sing 207 n n # _atom_sites.entry_id 1Q41 _atom_sites.fract_transf_matrix[1][1] 0.011985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IXM A 1 451 451 IXM IXM . D 2 IXM B 1 452 452 IXM IXM . E 3 HOH A 1 502 502 HOH WAT . E 3 HOH A 2 505 505 HOH WAT . E 3 HOH A 3 506 506 HOH WAT . E 3 HOH A 4 509 509 HOH WAT . E 3 HOH A 5 510 510 HOH WAT . E 3 HOH A 6 512 512 HOH WAT . E 3 HOH A 7 513 513 HOH WAT . E 3 HOH A 8 514 514 HOH WAT . E 3 HOH A 9 515 515 HOH WAT . E 3 HOH A 10 517 517 HOH WAT . E 3 HOH A 11 523 523 HOH WAT . E 3 HOH A 12 524 524 HOH WAT . E 3 HOH A 13 525 525 HOH WAT . E 3 HOH A 14 526 526 HOH WAT . E 3 HOH A 15 530 530 HOH WAT . E 3 HOH A 16 536 536 HOH WAT . E 3 HOH A 17 537 537 HOH WAT . E 3 HOH A 18 542 542 HOH WAT . E 3 HOH A 19 543 543 HOH WAT . E 3 HOH A 20 544 544 HOH WAT . E 3 HOH A 21 545 545 HOH WAT . E 3 HOH A 22 550 550 HOH WAT . E 3 HOH A 23 555 555 HOH WAT . E 3 HOH A 24 557 557 HOH WAT . E 3 HOH A 25 558 558 HOH WAT . E 3 HOH A 26 560 560 HOH WAT . E 3 HOH A 27 563 563 HOH WAT . E 3 HOH A 28 564 564 HOH WAT . E 3 HOH A 29 565 565 HOH WAT . E 3 HOH A 30 571 571 HOH WAT . E 3 HOH A 31 575 575 HOH WAT . E 3 HOH A 32 576 576 HOH WAT . E 3 HOH A 33 577 577 HOH WAT . E 3 HOH A 34 579 579 HOH WAT . E 3 HOH A 35 580 580 HOH WAT . E 3 HOH A 36 581 581 HOH WAT . E 3 HOH A 37 582 582 HOH WAT . E 3 HOH A 38 584 584 HOH WAT . E 3 HOH A 39 586 586 HOH WAT . E 3 HOH A 40 587 587 HOH WAT . E 3 HOH A 41 592 592 HOH WAT . E 3 HOH A 42 593 593 HOH WAT . E 3 HOH A 43 596 596 HOH WAT . E 3 HOH A 44 598 598 HOH WAT . E 3 HOH A 45 601 601 HOH WAT . E 3 HOH A 46 603 603 HOH WAT . E 3 HOH A 47 606 606 HOH WAT . E 3 HOH A 48 607 607 HOH WAT . E 3 HOH A 49 608 608 HOH WAT . E 3 HOH A 50 609 609 HOH WAT . E 3 HOH A 51 610 610 HOH WAT . E 3 HOH A 52 614 614 HOH WAT . E 3 HOH A 53 617 617 HOH WAT . E 3 HOH A 54 619 619 HOH WAT . E 3 HOH A 55 621 621 HOH WAT . E 3 HOH A 56 623 623 HOH WAT . E 3 HOH A 57 624 624 HOH WAT . E 3 HOH A 58 625 625 HOH WAT . E 3 HOH A 59 626 626 HOH WAT . E 3 HOH A 60 627 627 HOH WAT . E 3 HOH A 61 629 629 HOH WAT . E 3 HOH A 62 630 630 HOH WAT . E 3 HOH A 63 632 632 HOH WAT . E 3 HOH A 64 633 633 HOH WAT . E 3 HOH A 65 634 634 HOH WAT . E 3 HOH A 66 636 636 HOH WAT . E 3 HOH A 67 637 637 HOH WAT . E 3 HOH A 68 638 638 HOH WAT . E 3 HOH A 69 639 639 HOH WAT . F 3 HOH B 1 501 501 HOH WAT . F 3 HOH B 2 503 503 HOH WAT . F 3 HOH B 3 504 504 HOH WAT . F 3 HOH B 4 507 507 HOH WAT . F 3 HOH B 5 508 508 HOH WAT . F 3 HOH B 6 511 511 HOH WAT . F 3 HOH B 7 516 516 HOH WAT . F 3 HOH B 8 518 518 HOH WAT . F 3 HOH B 9 519 519 HOH WAT . F 3 HOH B 10 520 520 HOH WAT . F 3 HOH B 11 521 521 HOH WAT . F 3 HOH B 12 522 522 HOH WAT . F 3 HOH B 13 527 527 HOH WAT . F 3 HOH B 14 528 528 HOH WAT . F 3 HOH B 15 529 529 HOH WAT . F 3 HOH B 16 531 531 HOH WAT . F 3 HOH B 17 532 532 HOH WAT . F 3 HOH B 18 533 533 HOH WAT . F 3 HOH B 19 534 534 HOH WAT . F 3 HOH B 20 535 535 HOH WAT . F 3 HOH B 21 538 538 HOH WAT . F 3 HOH B 22 539 539 HOH WAT . F 3 HOH B 23 540 540 HOH WAT . F 3 HOH B 24 541 541 HOH WAT . F 3 HOH B 25 546 546 HOH WAT . F 3 HOH B 26 547 547 HOH WAT . F 3 HOH B 27 548 548 HOH WAT . F 3 HOH B 28 549 549 HOH WAT . F 3 HOH B 29 551 551 HOH WAT . F 3 HOH B 30 552 552 HOH WAT . F 3 HOH B 31 553 553 HOH WAT . F 3 HOH B 32 554 554 HOH WAT . F 3 HOH B 33 556 556 HOH WAT . F 3 HOH B 34 559 559 HOH WAT . F 3 HOH B 35 561 561 HOH WAT . F 3 HOH B 36 562 562 HOH WAT . F 3 HOH B 37 566 566 HOH WAT . F 3 HOH B 38 567 567 HOH WAT . F 3 HOH B 39 568 568 HOH WAT . F 3 HOH B 40 569 569 HOH WAT . F 3 HOH B 41 570 570 HOH WAT . F 3 HOH B 42 572 572 HOH WAT . F 3 HOH B 43 573 573 HOH WAT . F 3 HOH B 44 574 574 HOH WAT . F 3 HOH B 45 578 578 HOH WAT . F 3 HOH B 46 583 583 HOH WAT . F 3 HOH B 47 585 585 HOH WAT . F 3 HOH B 48 588 588 HOH WAT . F 3 HOH B 49 589 589 HOH WAT . F 3 HOH B 50 590 590 HOH WAT . F 3 HOH B 51 591 591 HOH WAT . F 3 HOH B 52 594 594 HOH WAT . F 3 HOH B 53 595 595 HOH WAT . F 3 HOH B 54 597 597 HOH WAT . F 3 HOH B 55 599 599 HOH WAT . F 3 HOH B 56 600 600 HOH WAT . F 3 HOH B 57 602 602 HOH WAT . F 3 HOH B 58 604 604 HOH WAT . F 3 HOH B 59 605 605 HOH WAT . F 3 HOH B 60 611 611 HOH WAT . F 3 HOH B 61 612 612 HOH WAT . F 3 HOH B 62 613 613 HOH WAT . F 3 HOH B 63 615 615 HOH WAT . F 3 HOH B 64 616 616 HOH WAT . F 3 HOH B 65 618 618 HOH WAT . F 3 HOH B 66 620 620 HOH WAT . F 3 HOH B 67 622 622 HOH WAT . F 3 HOH B 68 628 628 HOH WAT . F 3 HOH B 69 631 631 HOH WAT . F 3 HOH B 70 635 635 HOH WAT . F 3 HOH B 71 640 640 HOH WAT . F 3 HOH B 72 641 641 HOH WAT . F 3 HOH B 73 642 642 HOH WAT . F 3 HOH B 74 643 643 HOH WAT . F 3 HOH B 75 644 644 HOH WAT . F 3 HOH B 76 645 645 HOH WAT . F 3 HOH B 77 646 646 HOH WAT . F 3 HOH B 78 647 647 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IXM . . . D 2 24.961 -18.53 9.47 1 54.84 ? C1 IXM 452 B 1 HETATM 2 C C2 IXM . . . D 2 23.5 -18.205 9.381 1 55.46 ? C2 IXM 452 B 1 HETATM 3 C C3 IXM . . . D 2 25.28 -19.227 8.273 1 54.51 ? C3 IXM 452 B 1 HETATM 4 N N4 IXM . . . D 2 24.172 -19.363 7.471 1 53.9 ? N4 IXM 452 B 1 HETATM 5 C C5 IXM . . . D 2 26.588 -19.686 8.017 1 54.3 ? C5 IXM 452 B 1 HETATM 6 C C7 IXM . . . D 2 27.605 -19.442 8.996 1 54.4 ? C7 IXM 452 B 1 HETATM 7 C C9 IXM . . . D 2 27.289 -18.744 10.206 1 54.75 ? C9 IXM 452 B 1 HETATM 8 C C11 IXM . . . D 2 25.957 -18.28 10.448 1 54.12 ? C11 IXM 452 B 1 HETATM 9 C C13 IXM . . . D 2 23.041 -18.79 8.031 1 52.81 ? C13 IXM 452 B 1 HETATM 10 C C14 IXM . . . D 2 21.799 -18.731 7.442 1 50.78 ? C14 IXM 452 B 1 HETATM 11 C C15 IXM . . . D 2 21.596 -19.508 6.13 1 48.76 ? C15 IXM 452 B 1 HETATM 12 N N16 IXM . . . D 2 20.31 -19.207 5.704 1 47.01 ? N16 IXM 452 B 1 HETATM 13 C C17 IXM . . . D 2 19.67 -18.343 6.589 1 48.21 ? C17 IXM 452 B 1 HETATM 14 C C18 IXM . . . D 2 20.516 -18.013 7.685 1 49.53 ? C18 IXM 452 B 1 HETATM 15 C C19 IXM . . . D 2 18.353 -17.832 6.438 1 47.95 ? C19 IXM 452 B 1 HETATM 16 C C20 IXM . . . D 2 17.858 -16.95 7.431 1 48.68 ? C20 IXM 452 B 1 HETATM 17 C C21 IXM . . . D 2 18.68 -16.601 8.548 1 49.9 ? C21 IXM 452 B 1 HETATM 18 C C22 IXM . . . D 2 20.011 -17.131 8.678 1 49.67 ? C22 IXM 452 B 1 HETATM 19 O O23 IXM . . . D 2 22.393 -20.23 5.55 1 44.12 ? O23 IXM 452 B 1 HETATM 20 N N24 IXM . . . D 2 22.723 -17.567 10.211 1 58.89 ? N24 IXM 452 B 1 HETATM 21 O O39 IXM . . . D 2 23.314 -17.093 11.392 1 63.58 ? O39 IXM 452 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #