data_1Q4V # _model_server_result.job_id 11fp5fQzHi9kJUGdmigt9g _model_server_result.datetime_utc '2025-03-04 16:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 1Q4V # _exptl.entry_id 1Q4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Q4V _cell.length_a 80.487 _cell.length_b 80.487 _cell.length_c 37.939 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA,PQS dodecameric 12 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1,2,3 C,D,F,G,J,K 2 1,2,3 A,B,C,D,E,F,G,H,I,J,K 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 40.2435 69.703787 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -40.2435 69.703787 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C GLY 1 A GLY 1 1_555 A N IIL 2 A IIL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C IIL 2 A IIL 2 1_555 A N VAL 3 A VAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 C C GLY 1 C GLY 1 1_555 C N IIL 2 C IIL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 C C IIL 2 C IIL 2 1_555 C N VAL 3 C VAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_665 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_565 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 D NE2 HIS 10 D HIS 10 1_555 G ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 D NE2 HIS 10 D HIS 10 2_665 G ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 D NE2 HIS 10 D HIS 10 3_565 G ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Q4V _atom_sites.fract_transf_matrix[1][1] 0.012424 _atom_sites.fract_transf_matrix[1][2] 0.007173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 101 101 ZN ZN . F 4 IPH C 1 200 200 IPH IPH . G 3 ZN D 1 102 102 ZN ZN . H 5 HOH A 1 22 7 HOH HOH . H 5 HOH A 2 23 10 HOH HOH . H 5 HOH A 3 24 17 HOH HOH . H 5 HOH A 4 25 18 HOH HOH . H 5 HOH A 5 26 19 HOH HOH . H 5 HOH A 6 27 20 HOH HOH . H 5 HOH A 7 28 25 HOH HOH . H 5 HOH A 8 29 28 HOH HOH . H 5 HOH A 9 30 29 HOH HOH . H 5 HOH A 10 31 30 HOH HOH . H 5 HOH A 11 32 31 HOH HOH . H 5 HOH A 12 33 40 HOH HOH . H 5 HOH A 13 34 52 HOH HOH . H 5 HOH A 14 35 54 HOH HOH . H 5 HOH A 15 36 57 HOH HOH . H 5 HOH A 16 37 58 HOH HOH . H 5 HOH A 17 38 60 HOH HOH . H 5 HOH A 18 39 62 HOH HOH . H 5 HOH A 19 40 63 HOH HOH . I 5 HOH B 1 102 3 HOH HOH . I 5 HOH B 2 103 4 HOH HOH . I 5 HOH B 3 104 5 HOH HOH . I 5 HOH B 4 105 8 HOH HOH . I 5 HOH B 5 106 9 HOH HOH . I 5 HOH B 6 107 22 HOH HOH . I 5 HOH B 7 108 23 HOH HOH . I 5 HOH B 8 109 38 HOH HOH . I 5 HOH B 9 110 39 HOH HOH . I 5 HOH B 10 111 43 HOH HOH . I 5 HOH B 11 112 44 HOH HOH . I 5 HOH B 12 113 45 HOH HOH . I 5 HOH B 13 114 48 HOH HOH . I 5 HOH B 14 115 49 HOH HOH . I 5 HOH B 15 116 51 HOH HOH . I 5 HOH B 16 117 53 HOH HOH . I 5 HOH B 17 118 56 HOH HOH . I 5 HOH B 18 119 64 HOH HOH . J 5 HOH C 1 201 1 HOH HOH . J 5 HOH C 2 202 6 HOH HOH . J 5 HOH C 3 203 11 HOH HOH . J 5 HOH C 4 204 12 HOH HOH . J 5 HOH C 5 205 14 HOH HOH . J 5 HOH C 6 206 15 HOH HOH . J 5 HOH C 7 207 16 HOH HOH . J 5 HOH C 8 208 21 HOH HOH . J 5 HOH C 9 209 26 HOH HOH . J 5 HOH C 10 210 27 HOH HOH . J 5 HOH C 11 211 33 HOH HOH . J 5 HOH C 12 212 34 HOH HOH . J 5 HOH C 13 213 50 HOH HOH . K 5 HOH D 1 103 2 HOH HOH . K 5 HOH D 2 104 13 HOH HOH . K 5 HOH D 3 105 24 HOH HOH . K 5 HOH D 4 106 32 HOH HOH . K 5 HOH D 5 107 35 HOH HOH . K 5 HOH D 6 108 36 HOH HOH . K 5 HOH D 7 109 37 HOH HOH . K 5 HOH D 8 110 41 HOH HOH . K 5 HOH D 9 111 42 HOH HOH . K 5 HOH D 10 112 47 HOH HOH . K 5 HOH D 11 113 59 HOH HOH . K 5 HOH D 12 114 61 HOH HOH . K 5 HOH D 13 115 65 HOH HOH . K 5 HOH D 14 116 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 46.473 _atom_site.Cartn_z 6.527 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 14.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #