data_1Q5E # _model_server_result.job_id XPJu-W8LTsrVPAXIWpHrfA _model_server_result.datetime_utc '2024-11-27 03:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":440}' # _entry.id 1Q5E # _exptl.entry_id 1Q5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q5E _cell.length_a 61.52 _cell.length_b 61.52 _cell.length_c 256.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 365 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 365 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 440 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.277 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1Q5E _atom_sites.fract_transf_matrix[1][1] 0.016255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 440 440 HEM HEM . C 3 HOH A 1 441 1 HOH HOH . C 3 HOH A 2 442 2 HOH HOH . C 3 HOH A 3 443 3 HOH HOH . C 3 HOH A 4 444 4 HOH HOH . C 3 HOH A 5 445 5 HOH HOH . C 3 HOH A 6 446 6 HOH HOH . C 3 HOH A 7 447 7 HOH HOH . C 3 HOH A 8 448 8 HOH HOH . C 3 HOH A 9 449 9 HOH HOH . C 3 HOH A 10 450 10 HOH HOH . C 3 HOH A 11 451 11 HOH HOH . C 3 HOH A 12 452 12 HOH HOH . C 3 HOH A 13 453 13 HOH HOH . C 3 HOH A 14 454 14 HOH HOH . C 3 HOH A 15 455 15 HOH HOH . C 3 HOH A 16 456 16 HOH HOH . C 3 HOH A 17 457 17 HOH HOH . C 3 HOH A 18 458 18 HOH HOH . C 3 HOH A 19 459 19 HOH HOH . C 3 HOH A 20 460 20 HOH HOH . C 3 HOH A 21 461 21 HOH HOH . C 3 HOH A 22 462 22 HOH HOH . C 3 HOH A 23 463 23 HOH HOH . C 3 HOH A 24 464 24 HOH HOH . C 3 HOH A 25 465 25 HOH HOH . C 3 HOH A 26 466 26 HOH HOH . C 3 HOH A 27 467 27 HOH HOH . C 3 HOH A 28 468 28 HOH HOH . C 3 HOH A 29 469 29 HOH HOH . C 3 HOH A 30 470 30 HOH HOH . C 3 HOH A 31 471 31 HOH HOH . C 3 HOH A 32 472 32 HOH HOH . C 3 HOH A 33 473 33 HOH HOH . C 3 HOH A 34 474 34 HOH HOH . C 3 HOH A 35 475 35 HOH HOH . C 3 HOH A 36 476 36 HOH HOH . C 3 HOH A 37 477 37 HOH HOH . C 3 HOH A 38 478 38 HOH HOH . C 3 HOH A 39 479 39 HOH HOH . C 3 HOH A 40 480 40 HOH HOH . C 3 HOH A 41 481 41 HOH HOH . C 3 HOH A 42 482 42 HOH HOH . C 3 HOH A 43 483 43 HOH HOH . C 3 HOH A 44 484 44 HOH HOH . C 3 HOH A 45 485 45 HOH HOH . C 3 HOH A 46 486 46 HOH HOH . C 3 HOH A 47 487 47 HOH HOH . C 3 HOH A 48 488 48 HOH HOH . C 3 HOH A 49 489 49 HOH HOH . C 3 HOH A 50 490 50 HOH HOH . C 3 HOH A 51 491 51 HOH HOH . C 3 HOH A 52 492 52 HOH HOH . C 3 HOH A 53 493 53 HOH HOH . C 3 HOH A 54 494 55 HOH HOH . C 3 HOH A 55 495 57 HOH HOH . C 3 HOH A 56 496 60 HOH HOH . C 3 HOH A 57 497 61 HOH HOH . C 3 HOH A 58 498 64 HOH HOH . C 3 HOH A 59 499 65 HOH HOH . C 3 HOH A 60 500 68 HOH HOH . C 3 HOH A 61 501 72 HOH HOH . C 3 HOH A 62 502 73 HOH HOH . C 3 HOH A 63 503 74 HOH HOH . C 3 HOH A 64 504 75 HOH HOH . C 3 HOH A 65 505 76 HOH HOH . C 3 HOH A 66 506 79 HOH HOH . C 3 HOH A 67 507 80 HOH HOH . C 3 HOH A 68 508 81 HOH HOH . C 3 HOH A 69 509 82 HOH HOH . C 3 HOH A 70 510 83 HOH HOH . C 3 HOH A 71 511 85 HOH HOH . C 3 HOH A 72 512 86 HOH HOH . C 3 HOH A 73 513 87 HOH HOH . C 3 HOH A 74 514 88 HOH HOH . C 3 HOH A 75 515 89 HOH HOH . C 3 HOH A 76 516 90 HOH HOH . C 3 HOH A 77 517 91 HOH HOH . C 3 HOH A 78 518 92 HOH HOH . C 3 HOH A 79 519 93 HOH HOH . C 3 HOH A 80 520 94 HOH HOH . C 3 HOH A 81 521 95 HOH HOH . C 3 HOH A 82 522 96 HOH HOH . C 3 HOH A 83 523 97 HOH HOH . C 3 HOH A 84 524 98 HOH HOH . C 3 HOH A 85 525 99 HOH HOH . C 3 HOH A 86 526 100 HOH HOH . C 3 HOH A 87 527 101 HOH HOH . C 3 HOH A 88 528 102 HOH HOH . C 3 HOH A 89 529 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 8.899 41.958 22.369 1 46.7 ? CHA HEM 440 A 1 HETATM 2 C CHB HEM . . . B 2 12.879 40.28 20.201 1 50.77 ? CHB HEM 440 A 1 HETATM 3 C CHC HEM . . . B 2 12.062 35.991 22.293 1 47.67 ? CHC HEM 440 A 1 HETATM 4 C CHD HEM . . . B 2 7.865 37.517 23.877 1 47.7 ? CHD HEM 440 A 1 HETATM 5 C C1A HEM . . . B 2 10.11 41.9 21.694 1 49.47 ? C1A HEM 440 A 1 HETATM 6 C C2A HEM . . . B 2 10.765 43.059 21.117 1 48.35 ? C2A HEM 440 A 1 HETATM 7 C C3A HEM . . . B 2 11.862 42.611 20.509 1 47.58 ? C3A HEM 440 A 1 HETATM 8 C C4A HEM . . . B 2 11.942 41.163 20.703 1 48.07 ? C4A HEM 440 A 1 HETATM 9 C CMA HEM . . . B 2 12.857 43.499 19.755 1 42.44 ? CMA HEM 440 A 1 HETATM 10 C CAA HEM . . . B 2 10.252 44.526 21.235 1 50.89 ? CAA HEM 440 A 1 HETATM 11 C CBA HEM . . . B 2 9.588 45.102 19.98 1 52.71 ? CBA HEM 440 A 1 HETATM 12 C CGA HEM . . . B 2 9.148 46.529 20.246 1 56.28 ? CGA HEM 440 A 1 HETATM 13 O O1A HEM . . . B 2 7.977 46.797 20.61 1 59.7 ? O1A HEM 440 A 1 HETATM 14 O O2A HEM . . . B 2 9.971 47.463 20.098 1 57.73 ? O2A HEM 440 A 1 HETATM 15 C C1B HEM . . . B 2 12.967 38.954 20.571 1 50.36 ? C1B HEM 440 A 1 HETATM 16 C C2B HEM . . . B 2 14.051 38.051 20.2 1 51.06 ? C2B HEM 440 A 1 HETATM 17 C C3B HEM . . . B 2 13.805 36.872 20.779 1 49.7 ? C3B HEM 440 A 1 HETATM 18 C C4B HEM . . . B 2 12.588 37.008 21.536 1 48.68 ? C4B HEM 440 A 1 HETATM 19 C CMB HEM . . . B 2 15.243 38.401 19.267 1 50.89 ? CMB HEM 440 A 1 HETATM 20 C CAB HEM . . . B 2 14.627 35.589 20.721 1 51.28 ? CAB HEM 440 A 1 HETATM 21 C CBB HEM . . . B 2 15.847 35.512 20.175 1 53.66 ? CBB HEM 440 A 1 HETATM 22 C C1C HEM . . . B 2 10.878 36.015 22.967 1 46.55 ? C1C HEM 440 A 1 HETATM 23 C C2C HEM . . . B 2 10.268 34.917 23.735 1 45.31 ? C2C HEM 440 A 1 HETATM 24 C C3C HEM . . . B 2 9.089 35.377 24.168 1 46.16 ? C3C HEM 440 A 1 HETATM 25 C C4C HEM . . . B 2 8.949 36.737 23.69 1 48.22 ? C4C HEM 440 A 1 HETATM 26 C CMC HEM . . . B 2 10.894 33.533 23.966 1 39.86 ? CMC HEM 440 A 1 HETATM 27 C CAC HEM . . . B 2 8.031 34.71 24.998 1 45.51 ? CAC HEM 440 A 1 HETATM 28 C CBC HEM . . . B 2 8.218 33.504 25.561 1 48.76 ? CBC HEM 440 A 1 HETATM 29 C C1D HEM . . . B 2 7.753 38.84 23.547 1 48.79 ? C1D HEM 440 A 1 HETATM 30 C C2D HEM . . . B 2 6.53 39.541 23.792 1 46.24 ? C2D HEM 440 A 1 HETATM 31 C C3D HEM . . . B 2 6.78 40.971 23.351 1 46.22 ? C3D HEM 440 A 1 HETATM 32 C C4D HEM . . . B 2 8.167 40.931 22.851 1 44.67 ? C4D HEM 440 A 1 HETATM 33 C CMD HEM . . . B 2 5.271 38.908 24.397 1 44.56 ? CMD HEM 440 A 1 HETATM 34 C CAD HEM . . . B 2 5.7 42.105 23.449 1 43.51 ? CAD HEM 440 A 1 HETATM 35 C CBD HEM . . . B 2 6.151 43.211 24.417 1 50.1 ? CBD HEM 440 A 1 HETATM 36 C CGD HEM . . . B 2 5 44.047 24.959 1 53.7 ? CGD HEM 440 A 1 HETATM 37 O O1D HEM . . . B 2 4.446 43.69 26.045 1 55.39 ? O1D HEM 440 A 1 HETATM 38 O O2D HEM . . . B 2 4.592 45.059 24.328 1 54.09 ? O2D HEM 440 A 1 HETATM 39 N NA HEM . . . B 2 10.866 40.747 21.43 1 48.84 ? NA HEM 440 A 1 HETATM 40 N NB HEM . . . B 2 12.088 38.287 21.398 1 48.21 ? NB HEM 440 A 1 HETATM 41 N NC HEM . . . B 2 10.061 37.117 22.968 1 47.69 ? NC HEM 440 A 1 HETATM 42 N ND HEM . . . B 2 8.723 39.692 23.009 1 48.03 ? ND HEM 440 A 1 HETATM 43 FE FE HEM . . . B 2 10.539 38.992 22.359 1 50.18 ? FE HEM 440 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #