data_1Q5J
#
_model_server_result.job_id            '_efjOxCnGzoZc3tpe8psyQ' 
_model_server_result.datetime_utc      '2024-11-30 17:12:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    1Q5J 
#
_exptl.entry_id    1Q5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.41 
_cell.angle_gamma         90 
_cell.entry_id            1Q5J 
_cell.length_a            44.527 
_cell.length_b            108.3 
_cell.length_c            55.818 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale2 B NZ LYS 216 B LYS 216 1_555 D C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 243 n n 
C1 C6 RET sing 244 n n 
C1 C16 RET sing 245 n n 
C1 C17 RET sing 246 n n 
C2 C3 RET sing 247 n n 
C2 H21 RET sing 248 n n 
C2 H22 RET sing 249 n n 
C3 C4 RET sing 250 n n 
C3 H31 RET sing 251 n n 
C3 H32 RET sing 252 n n 
C4 C5 RET sing 253 n n 
C4 H41 RET sing 254 n n 
C4 H42 RET sing 255 n n 
C5 C6 RET doub 256 n n 
C5 C18 RET sing 257 n n 
C6 C7 RET sing 258 n n 
C7 C8 RET doub 259 e n 
C7 H7 RET sing 260 n n 
C8 C9 RET sing 261 n n 
C8 H8 RET sing 262 n n 
C9 C10 RET doub 263 e n 
C9 C19 RET sing 264 n n 
C10 C11 RET sing 265 n n 
C10 H10 RET sing 266 n n 
C11 C12 RET doub 267 e n 
C11 H11 RET sing 268 n n 
C12 C13 RET sing 269 n n 
C12 H12 RET sing 270 n n 
C13 C14 RET doub 271 e n 
C13 C20 RET sing 272 n n 
C14 C15 RET sing 273 n n 
C14 H14 RET sing 274 n n 
C15 O1 RET doub 275 n n 
C15 H15 RET sing 276 n n 
C16 H161 RET sing 277 n n 
C16 H162 RET sing 278 n n 
C16 H163 RET sing 279 n n 
C17 H171 RET sing 280 n n 
C17 H172 RET sing 281 n n 
C17 H173 RET sing 282 n n 
C18 H181 RET sing 283 n n 
C18 H182 RET sing 284 n n 
C18 H183 RET sing 285 n n 
C19 H191 RET sing 286 n n 
C19 H192 RET sing 287 n n 
C19 H193 RET sing 288 n n 
C20 H201 RET sing 289 n n 
C20 H202 RET sing 290 n n 
C20 H203 RET sing 291 n n 
#
_atom_sites.entry_id                     1Q5J 
_atom_sites.fract_transf_matrix[1][1]    0.022458 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009723 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009234 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019522 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RET A 1 301 301 RET RET . 
D 2 RET B 1 301 301 RET RET . 
E 3 HOH A 1 302 1 HOH HOH . 
E 3 HOH A 2 303 2 HOH HOH . 
E 3 HOH A 3 304 3 HOH HOH . 
E 3 HOH A 4 305 4 HOH HOH . 
E 3 HOH A 5 306 5 HOH HOH . 
E 3 HOH A 6 307 6 HOH HOH . 
E 3 HOH A 7 308 7 HOH HOH . 
E 3 HOH A 8 309 8 HOH HOH . 
E 3 HOH A 9 310 9 HOH HOH . 
E 3 HOH A 10 311 10 HOH HOH . 
E 3 HOH A 11 312 11 HOH HOH . 
E 3 HOH A 12 313 12 HOH HOH . 
E 3 HOH A 13 314 13 HOH HOH . 
E 3 HOH A 14 315 14 HOH HOH . 
E 3 HOH A 15 316 15 HOH HOH . 
E 3 HOH A 16 317 16 HOH HOH . 
E 3 HOH A 17 318 17 HOH HOH . 
E 3 HOH A 18 319 18 HOH HOH . 
E 3 HOH A 19 320 40 HOH HOH . 
E 3 HOH A 20 321 41 HOH HOH . 
E 3 HOH A 21 322 48 HOH HOH . 
E 3 HOH A 22 323 49 HOH HOH . 
E 3 HOH A 23 324 51 HOH HOH . 
E 3 HOH A 24 325 53 HOH HOH . 
E 3 HOH A 25 326 54 HOH HOH . 
E 3 HOH A 26 327 57 HOH HOH . 
E 3 HOH A 27 328 61 HOH HOH . 
E 3 HOH A 28 329 63 HOH HOH . 
E 3 HOH A 29 330 64 HOH HOH . 
E 3 HOH A 30 331 65 HOH HOH . 
E 3 HOH A 31 332 66 HOH HOH . 
E 3 HOH A 32 333 68 HOH HOH . 
F 3 HOH B 1 302 19 HOH HOH . 
F 3 HOH B 2 303 20 HOH HOH . 
F 3 HOH B 3 304 21 HOH HOH . 
F 3 HOH B 4 305 22 HOH HOH . 
F 3 HOH B 5 306 23 HOH HOH . 
F 3 HOH B 6 307 24 HOH HOH . 
F 3 HOH B 7 308 25 HOH HOH . 
F 3 HOH B 8 309 26 HOH HOH . 
F 3 HOH B 9 310 27 HOH HOH . 
F 3 HOH B 10 311 28 HOH HOH . 
F 3 HOH B 11 312 29 HOH HOH . 
F 3 HOH B 12 313 30 HOH HOH . 
F 3 HOH B 13 314 31 HOH HOH . 
F 3 HOH B 14 315 32 HOH HOH . 
F 3 HOH B 15 316 33 HOH HOH . 
F 3 HOH B 16 317 34 HOH HOH . 
F 3 HOH B 17 318 35 HOH HOH . 
F 3 HOH B 18 319 36 HOH HOH . 
F 3 HOH B 19 320 37 HOH HOH . 
F 3 HOH B 20 321 38 HOH HOH . 
F 3 HOH B 21 322 39 HOH HOH . 
F 3 HOH B 22 323 42 HOH HOH . 
F 3 HOH B 23 324 43 HOH HOH . 
F 3 HOH B 24 325 44 HOH HOH . 
F 3 HOH B 25 326 45 HOH HOH . 
F 3 HOH B 26 327 46 HOH HOH . 
F 3 HOH B 27 328 47 HOH HOH . 
F 3 HOH B 28 329 50 HOH HOH . 
F 3 HOH B 29 330 52 HOH HOH . 
F 3 HOH B 30 331 55 HOH HOH . 
F 3 HOH B 31 332 56 HOH HOH . 
F 3 HOH B 32 333 58 HOH HOH . 
F 3 HOH B 33 334 59 HOH HOH . 
F 3 HOH B 34 335 60 HOH HOH . 
F 3 HOH B 35 336 62 HOH HOH . 
F 3 HOH B 36 337 67 HOH HOH . 
F 3 HOH B 37 338 69 HOH HOH . 
F 3 HOH B 38 339 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . C 2 40.552 54.824 2.163 1 15.47 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . C 2 41.356 56.059 1.689 1 15.99 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . C 2 41.97 56.041 0.342 1 16.49 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . C 2 42.511 54.689 -0.155 1 16.92 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . C 2 41.733 53.415 0.269 1 16.13 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . C 2 40.821 53.472 1.342 1 16.01 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . C 2 40.141 52.17 1.631 1 16.69 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . C 2 39.212 51.822 2.571 1 17.48 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . C 2 38.572 50.543 2.783 1 17.89 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . C 2 37.705 50.602 3.83 1 18.81 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . C 2 36.926 49.438 4.247 1 22.01 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . C 2 36.14 49.729 5.314 1 22.78 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . C 2 35.26 48.772 5.96 1 24.62 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . C 2 34.614 49.39 7.004 1 25.18 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . C 2 33.667 48.767 7.879 1 25.18 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . C 2 40.934 54.651 3.681 1 15.65 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . C 2 39.064 55.344 2.044 1 13.78 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . C 2 42.151 52.276 -0.631 1 12.76 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . C 2 38.856 49.333 1.929 1 15.73 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . C 2 35.12 47.34 5.513 1 22.94 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           387 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           20 
#