data_1Q5O # _model_server_result.job_id h5luHq7rPjAPVboALsj3vA _model_server_result.datetime_utc '2024-11-01 02:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 1Q5O # _exptl.entry_id 1Q5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q5O _cell.length_a 95.429 _cell.length_b 95.429 _cell.length_c 50.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 95.429 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 47.7145 47.7145 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -47.7145 47.7145 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 21 A TYR 459 1_555 A N MSE 22 A MSE 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 22 A MSE 460 1_555 A N SER 23 A SER 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LYS 46 A LYS 484 1_555 A N MSE 47 A MSE 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 47 A MSE 485 1_555 A N PHE 48 A PHE 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C SER 76 A SER 514 1_555 A N MSE 77 A MSE 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 77 A MSE 515 1_555 A N PRO 78 A PRO 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C ALA 90 A ALA 528 1_555 A N MSE 91 A MSE 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 91 A MSE 529 1_555 A N LEU 92 A LEU 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C LYS 115 A LYS 553 1_555 A N MSE 116 A MSE 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 116 A MSE 554 1_555 A N TYR 117 A TYR 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C GLU 133 A GLU 571 1_555 A N MSE 134 A MSE 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C MSE 134 A MSE 572 1_555 A N LYS 135 A LYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C PRO 181 A PRO 619 1_555 A N MSE 182 A MSE 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C MSE 182 A MSE 620 1_555 A N MSE 183 A MSE 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C MSE 183 A MSE 621 1_555 A N ARG 184 A ARG 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1Q5O _atom_sites.fract_transf_matrix[1][1] 0.010479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 201 1 CMP CMP . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 16 16 HOH TIP . C 3 HOH A 17 17 17 HOH TIP . C 3 HOH A 18 18 18 HOH TIP . C 3 HOH A 19 19 19 HOH TIP . C 3 HOH A 20 20 20 HOH TIP . C 3 HOH A 21 21 21 HOH TIP . C 3 HOH A 22 22 22 HOH TIP . C 3 HOH A 23 23 23 HOH TIP . C 3 HOH A 24 24 24 HOH TIP . C 3 HOH A 25 25 25 HOH TIP . C 3 HOH A 26 26 26 HOH TIP . C 3 HOH A 27 27 27 HOH TIP . C 3 HOH A 28 28 28 HOH TIP . C 3 HOH A 29 29 29 HOH TIP . C 3 HOH A 30 30 30 HOH TIP . C 3 HOH A 31 31 31 HOH TIP . C 3 HOH A 32 32 32 HOH TIP . C 3 HOH A 33 33 33 HOH TIP . C 3 HOH A 34 34 34 HOH TIP . C 3 HOH A 35 35 35 HOH TIP . C 3 HOH A 36 36 36 HOH TIP . C 3 HOH A 37 37 37 HOH TIP . C 3 HOH A 38 38 38 HOH TIP . C 3 HOH A 39 39 39 HOH TIP . C 3 HOH A 40 40 40 HOH TIP . C 3 HOH A 41 41 41 HOH TIP . C 3 HOH A 42 42 42 HOH TIP . C 3 HOH A 43 43 43 HOH TIP . C 3 HOH A 44 44 44 HOH TIP . C 3 HOH A 45 45 45 HOH TIP . C 3 HOH A 46 46 46 HOH TIP . C 3 HOH A 47 47 47 HOH TIP . C 3 HOH A 48 48 48 HOH TIP . C 3 HOH A 49 49 49 HOH TIP . C 3 HOH A 50 50 50 HOH TIP . C 3 HOH A 51 51 51 HOH TIP . C 3 HOH A 52 52 52 HOH TIP . C 3 HOH A 53 53 53 HOH TIP . C 3 HOH A 54 54 54 HOH TIP . C 3 HOH A 55 55 55 HOH TIP . C 3 HOH A 56 56 56 HOH TIP . C 3 HOH A 57 57 57 HOH TIP . C 3 HOH A 58 58 58 HOH TIP . C 3 HOH A 59 59 59 HOH TIP . C 3 HOH A 60 60 60 HOH TIP . C 3 HOH A 61 61 61 HOH TIP . C 3 HOH A 62 62 62 HOH TIP . C 3 HOH A 63 63 63 HOH TIP . C 3 HOH A 64 64 64 HOH TIP . C 3 HOH A 65 65 65 HOH TIP . C 3 HOH A 66 66 66 HOH TIP . C 3 HOH A 67 67 67 HOH TIP . C 3 HOH A 68 68 68 HOH TIP . C 3 HOH A 69 69 69 HOH TIP . C 3 HOH A 70 70 70 HOH TIP . C 3 HOH A 71 71 71 HOH TIP . C 3 HOH A 72 72 72 HOH TIP . C 3 HOH A 73 73 73 HOH TIP . C 3 HOH A 74 74 74 HOH TIP . C 3 HOH A 75 75 75 HOH TIP . C 3 HOH A 76 76 76 HOH TIP . C 3 HOH A 77 77 77 HOH TIP . C 3 HOH A 78 78 78 HOH TIP . C 3 HOH A 79 79 79 HOH TIP . C 3 HOH A 80 80 80 HOH TIP . C 3 HOH A 81 81 81 HOH TIP . C 3 HOH A 82 82 82 HOH TIP . C 3 HOH A 83 83 83 HOH TIP . C 3 HOH A 84 84 84 HOH TIP . C 3 HOH A 85 85 85 HOH TIP . C 3 HOH A 86 86 86 HOH TIP . C 3 HOH A 87 87 87 HOH TIP . C 3 HOH A 88 88 88 HOH TIP . C 3 HOH A 89 89 89 HOH TIP . C 3 HOH A 90 90 90 HOH TIP . C 3 HOH A 91 91 91 HOH TIP . C 3 HOH A 92 92 92 HOH TIP . C 3 HOH A 93 93 93 HOH TIP . C 3 HOH A 94 94 94 HOH TIP . C 3 HOH A 95 95 95 HOH TIP . C 3 HOH A 96 96 96 HOH TIP . C 3 HOH A 97 97 97 HOH TIP . C 3 HOH A 98 98 98 HOH TIP . C 3 HOH A 99 99 99 HOH TIP . C 3 HOH A 100 100 100 HOH TIP . C 3 HOH A 101 101 101 HOH TIP . C 3 HOH A 102 102 102 HOH TIP . C 3 HOH A 103 103 103 HOH TIP . C 3 HOH A 104 104 104 HOH TIP . C 3 HOH A 105 105 105 HOH TIP . C 3 HOH A 106 106 106 HOH TIP . C 3 HOH A 107 107 107 HOH TIP . C 3 HOH A 108 108 108 HOH TIP . C 3 HOH A 109 109 109 HOH TIP . C 3 HOH A 110 110 110 HOH TIP . C 3 HOH A 111 111 111 HOH TIP . C 3 HOH A 112 112 112 HOH TIP . C 3 HOH A 113 113 113 HOH TIP . C 3 HOH A 114 114 114 HOH TIP . C 3 HOH A 115 115 115 HOH TIP . C 3 HOH A 116 116 116 HOH TIP . C 3 HOH A 117 117 117 HOH TIP . C 3 HOH A 118 118 118 HOH TIP . C 3 HOH A 119 119 119 HOH TIP . C 3 HOH A 120 120 120 HOH TIP . C 3 HOH A 121 121 121 HOH TIP . C 3 HOH A 122 122 122 HOH TIP . C 3 HOH A 123 123 123 HOH TIP . C 3 HOH A 124 124 124 HOH TIP . C 3 HOH A 125 125 125 HOH TIP . C 3 HOH A 126 126 126 HOH TIP . C 3 HOH A 127 127 127 HOH TIP . C 3 HOH A 128 128 128 HOH TIP . C 3 HOH A 129 129 129 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 25.151 41.256 6.851 1 11.19 ? P CMP 201 A 1 HETATM 2 O O1P CMP . . . B 2 25.324 40.593 5.539 1 9.93 ? O1P CMP 201 A 1 HETATM 3 O O2P CMP . . . B 2 23.855 41.902 7.158 1 8.1 ? O2P CMP 201 A 1 HETATM 4 O O5' CMP . . . B 2 25.529 40.202 8.011 1 10.78 ? O5' CMP 201 A 1 HETATM 5 C C5' CMP . . . B 2 26.891 39.785 8.159 1 13.97 ? C5' CMP 201 A 1 HETATM 6 C C4' CMP . . . B 2 27.768 41.019 8.377 1 11.92 ? C4' CMP 201 A 1 HETATM 7 O O4' CMP . . . B 2 29.181 40.781 8.362 1 12.56 ? O4' CMP 201 A 1 HETATM 8 C C3' CMP . . . B 2 27.635 41.88 7.126 1 13.47 ? C3' CMP 201 A 1 HETATM 9 O O3' CMP . . . B 2 26.299 42.374 7.017 1 10.02 ? O3' CMP 201 A 1 HETATM 10 C C2' CMP . . . B 2 28.669 42.948 7.477 1 13.02 ? C2' CMP 201 A 1 HETATM 11 O O2' CMP . . . B 2 28.116 43.78 8.501 1 15.95 ? O2' CMP 201 A 1 HETATM 12 C C1' CMP . . . B 2 29.771 42.064 8.072 1 12.91 ? C1' CMP 201 A 1 HETATM 13 N N9 CMP . . . B 2 30.877 41.859 7.107 1 13.17 ? N9 CMP 201 A 1 HETATM 14 C C8 CMP . . . B 2 30.814 41.205 5.949 1 13.44 ? C8 CMP 201 A 1 HETATM 15 N N7 CMP . . . B 2 32.005 41.231 5.355 1 14.07 ? N7 CMP 201 A 1 HETATM 16 C C5 CMP . . . B 2 32.836 41.907 6.142 1 14.7 ? C5 CMP 201 A 1 HETATM 17 C C6 CMP . . . B 2 34.178 42.264 6.067 1 15.1 ? C6 CMP 201 A 1 HETATM 18 N N6 CMP . . . B 2 34.916 41.912 5.018 1 14.5 ? N6 CMP 201 A 1 HETATM 19 N N1 CMP . . . B 2 34.718 42.973 7.069 1 15.86 ? N1 CMP 201 A 1 HETATM 20 C C2 CMP . . . B 2 34.005 43.338 8.122 1 15.91 ? C2 CMP 201 A 1 HETATM 21 N N3 CMP . . . B 2 32.727 43.015 8.224 1 14.28 ? N3 CMP 201 A 1 HETATM 22 C C4 CMP . . . B 2 32.119 42.308 7.26 1 13.47 ? C4 CMP 201 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #