data_1Q61
#
_model_server_result.job_id            Z6sHvbxoLZ3ocxIyJu48Hg 
_model_server_result.datetime_utc      '2024-11-19 22:23:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    1Q61 
#
_exptl.entry_id    1Q61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.41 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OCTANOYL-N-METHYLGLUCAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q61 
_cell.length_a            59.87 
_cell.length_b            79.42 
_cell.length_c            100.886 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C15 H31 N O6' 
_chem_comp.formula_weight    321.41 
_chem_comp.id                MG8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OCTANOYL-N-METHYLGLUCAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MEGA 8;N-(D-GLUCITYL)-N-METHYLOCTANAMIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MG8 sing 237 n n 
C1 H11A MG8 sing 238 n n 
C1 H12A MG8 sing 239 n n 
C1 H13A MG8 sing 240 n n 
C2 C3 MG8 sing 241 n n 
C2 H21 MG8 sing 242 n n 
C2 H22 MG8 sing 243 n n 
C3 C4 MG8 sing 244 n n 
C3 H31 MG8 sing 245 n n 
C3 H32 MG8 sing 246 n n 
C4 C5 MG8 sing 247 n n 
C4 H41 MG8 sing 248 n n 
C4 H42 MG8 sing 249 n n 
C5 C6 MG8 sing 250 n n 
C5 H51 MG8 sing 251 n n 
C5 H52 MG8 sing 252 n n 
C6 C7 MG8 sing 253 n n 
C6 H61 MG8 sing 254 n n 
C6 H62 MG8 sing 255 n n 
C7 C8 MG8 sing 256 n n 
C7 H71 MG8 sing 257 n n 
C7 H72 MG8 sing 258 n n 
C8 O8 MG8 doub 259 n n 
C8 N MG8 sing 260 n n 
N C9 MG8 sing 261 n n 
N C15 MG8 sing 262 n n 
C9 C10 MG8 sing 263 n n 
C9 H91 MG8 sing 264 n n 
C9 H92 MG8 sing 265 n n 
C10 O10 MG8 sing 266 n n 
C10 C11 MG8 sing 267 n n 
C10 H10 MG8 sing 268 n n 
O10 HO10 MG8 sing 269 n n 
C11 O11 MG8 sing 270 n n 
C11 C12 MG8 sing 271 n n 
C11 H11 MG8 sing 272 n n 
O11 HO11 MG8 sing 273 n n 
C12 O12 MG8 sing 274 n n 
C12 C13 MG8 sing 275 n n 
C12 H12 MG8 sing 276 n n 
O12 HO12 MG8 sing 277 n n 
C13 O13 MG8 sing 278 n n 
C13 C14 MG8 sing 279 n n 
C13 H13 MG8 sing 280 n n 
O13 HO13 MG8 sing 281 n n 
C14 O14 MG8 sing 282 n n 
C14 H141 MG8 sing 283 n n 
C14 H142 MG8 sing 284 n n 
O14 HO14 MG8 sing 285 n n 
C15 H151 MG8 sing 286 n n 
C15 H152 MG8 sing 287 n n 
C15 H153 MG8 sing 288 n n 
#
_atom_sites.entry_id                     1Q61 
_atom_sites.fract_transf_matrix[1][1]    0.016703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG8 A 1 500 500 MG8 MG8 . 
D 4 HOH A 1 501 21 HOH HOH . 
D 4 HOH A 2 502 33 HOH HOH . 
D 4 HOH A 3 503 39 HOH HOH . 
D 4 HOH A 4 504 57 HOH HOH . 
D 4 HOH A 5 505 58 HOH HOH . 
D 4 HOH A 6 506 59 HOH HOH . 
D 4 HOH A 7 507 60 HOH HOH . 
D 4 HOH A 8 508 61 HOH HOH . 
D 4 HOH A 9 509 63 HOH HOH . 
D 4 HOH A 10 510 65 HOH HOH . 
D 4 HOH A 11 511 66 HOH HOH . 
D 4 HOH A 12 512 67 HOH HOH . 
D 4 HOH A 13 513 68 HOH HOH . 
D 4 HOH A 14 514 69 HOH HOH . 
D 4 HOH A 15 515 70 HOH HOH . 
D 4 HOH A 16 516 73 HOH HOH . 
D 4 HOH A 17 517 80 HOH HOH . 
D 4 HOH A 18 518 82 HOH HOH . 
D 4 HOH A 19 519 88 HOH HOH . 
D 4 HOH A 20 520 94 HOH HOH . 
D 4 HOH A 21 521 95 HOH HOH . 
D 4 HOH A 22 522 98 HOH HOH . 
D 4 HOH A 23 523 99 HOH HOH . 
D 4 HOH A 24 524 106 HOH HOH . 
D 4 HOH A 25 525 108 HOH HOH . 
D 4 HOH A 26 526 109 HOH HOH . 
D 4 HOH A 27 527 110 HOH HOH . 
D 4 HOH A 28 528 111 HOH HOH . 
D 4 HOH A 29 529 113 HOH HOH . 
D 4 HOH A 30 530 114 HOH HOH . 
D 4 HOH A 31 531 120 HOH HOH . 
D 4 HOH A 32 532 121 HOH HOH . 
D 4 HOH A 33 533 122 HOH HOH . 
D 4 HOH A 34 534 123 HOH HOH . 
D 4 HOH A 35 535 124 HOH HOH . 
D 4 HOH A 36 536 127 HOH HOH . 
D 4 HOH A 37 537 128 HOH HOH . 
D 4 HOH A 38 538 130 HOH HOH . 
D 4 HOH A 39 539 131 HOH HOH . 
D 4 HOH A 40 540 133 HOH HOH . 
D 4 HOH A 41 541 136 HOH HOH . 
D 4 HOH A 42 542 138 HOH HOH . 
D 4 HOH A 43 543 139 HOH HOH . 
D 4 HOH A 44 544 140 HOH HOH . 
D 4 HOH A 45 545 142 HOH HOH . 
D 4 HOH A 46 546 144 HOH HOH . 
D 4 HOH A 47 547 145 HOH HOH . 
D 4 HOH A 48 548 147 HOH HOH . 
D 4 HOH A 49 549 153 HOH HOH . 
D 4 HOH A 50 550 156 HOH HOH . 
D 4 HOH A 51 551 160 HOH HOH . 
D 4 HOH A 52 552 162 HOH HOH . 
D 4 HOH A 53 553 2 HOH HOH . 
D 4 HOH A 54 554 3 HOH HOH . 
D 4 HOH A 55 555 4 HOH HOH . 
D 4 HOH A 56 556 5 HOH HOH . 
D 4 HOH A 57 557 7 HOH HOH . 
D 4 HOH A 58 558 8 HOH HOH . 
D 4 HOH A 59 559 9 HOH HOH . 
D 4 HOH A 60 560 10 HOH HOH . 
D 4 HOH A 61 561 11 HOH HOH . 
D 4 HOH A 62 562 12 HOH HOH . 
D 4 HOH A 63 563 15 HOH HOH . 
D 4 HOH A 64 564 16 HOH HOH . 
D 4 HOH A 65 565 17 HOH HOH . 
D 4 HOH A 66 566 18 HOH HOH . 
D 4 HOH A 67 567 19 HOH HOH . 
D 4 HOH A 68 568 20 HOH HOH . 
D 4 HOH A 69 569 22 HOH HOH . 
D 4 HOH A 70 570 23 HOH HOH . 
D 4 HOH A 71 571 24 HOH HOH . 
D 4 HOH A 72 572 25 HOH HOH . 
D 4 HOH A 73 573 26 HOH HOH . 
D 4 HOH A 74 574 28 HOH HOH . 
D 4 HOH A 75 575 29 HOH HOH . 
D 4 HOH A 76 576 30 HOH HOH . 
D 4 HOH A 77 577 31 HOH HOH . 
D 4 HOH A 78 578 32 HOH HOH . 
D 4 HOH A 79 579 35 HOH HOH . 
D 4 HOH A 80 580 36 HOH HOH . 
D 4 HOH A 81 581 37 HOH HOH . 
D 4 HOH A 82 582 39 HOH HOH . 
D 4 HOH A 83 583 40 HOH HOH . 
D 4 HOH A 84 584 41 HOH HOH . 
D 4 HOH A 85 585 42 HOH HOH . 
D 4 HOH A 86 586 43 HOH HOH . 
D 4 HOH A 87 587 44 HOH HOH . 
D 4 HOH A 88 588 45 HOH HOH . 
D 4 HOH A 89 589 46 HOH HOH . 
D 4 HOH A 90 590 48 HOH HOH . 
D 4 HOH A 91 591 49 HOH HOH . 
D 4 HOH A 92 592 50 HOH HOH . 
D 4 HOH A 93 593 53 HOH HOH . 
D 4 HOH A 94 594 54 HOH HOH . 
D 4 HOH A 95 595 55 HOH HOH . 
D 4 HOH A 96 596 56 HOH HOH . 
D 4 HOH A 97 597 58 HOH HOH . 
D 4 HOH A 98 598 59 HOH HOH . 
D 4 HOH A 99 599 60 HOH HOH . 
D 4 HOH A 100 600 61 HOH HOH . 
D 4 HOH A 101 601 62 HOH HOH . 
D 4 HOH A 102 602 64 HOH HOH . 
D 4 HOH A 103 603 65 HOH HOH . 
D 4 HOH A 104 604 69 HOH HOH . 
D 4 HOH A 105 605 70 HOH HOH . 
D 4 HOH A 106 606 71 HOH HOH . 
D 4 HOH A 107 607 72 HOH HOH . 
D 4 HOH A 108 608 73 HOH HOH . 
D 4 HOH A 109 609 74 HOH HOH . 
D 4 HOH A 110 610 76 HOH HOH . 
D 4 HOH A 111 611 77 HOH HOH . 
D 4 HOH A 112 612 78 HOH HOH . 
D 4 HOH A 113 613 82 HOH HOH . 
D 4 HOH A 114 614 84 HOH HOH . 
D 4 HOH A 115 615 86 HOH HOH . 
D 4 HOH A 116 616 89 HOH HOH . 
D 4 HOH A 117 617 90 HOH HOH . 
D 4 HOH A 118 618 91 HOH HOH . 
D 4 HOH A 119 619 93 HOH HOH . 
D 4 HOH A 120 620 95 HOH HOH . 
D 4 HOH A 121 621 98 HOH HOH . 
D 4 HOH A 122 622 99 HOH HOH . 
D 4 HOH A 123 623 100 HOH HOH . 
D 4 HOH A 124 624 101 HOH HOH . 
D 4 HOH A 125 625 102 HOH HOH . 
D 4 HOH A 126 626 103 HOH HOH . 
D 4 HOH A 127 627 104 HOH HOH . 
D 4 HOH A 128 628 105 HOH HOH . 
D 4 HOH A 129 629 106 HOH HOH . 
D 4 HOH A 130 630 107 HOH HOH . 
D 4 HOH A 131 631 108 HOH HOH . 
D 4 HOH A 132 632 109 HOH HOH . 
D 4 HOH A 133 633 202 HOH HOH . 
D 4 HOH A 134 634 204 HOH HOH . 
D 4 HOH A 135 635 206 HOH HOH . 
D 4 HOH A 136 636 210 HOH HOH . 
D 4 HOH A 137 637 212 HOH HOH . 
D 4 HOH A 138 638 214 HOH HOH . 
D 4 HOH A 139 639 216 HOH HOH . 
D 4 HOH A 140 640 220 HOH HOH . 
E 4 HOH I 1 41 134 HOH HOH . 
E 4 HOH I 2 54 1 HOH HOH . 
E 4 HOH I 3 59 6 HOH HOH . 
E 4 HOH I 4 66 14 HOH HOH . 
E 4 HOH I 5 73 21 HOH HOH . 
E 4 HOH I 6 79 27 HOH HOH . 
E 4 HOH I 7 85 33 HOH HOH . 
E 4 HOH I 8 86 34 HOH HOH . 
E 4 HOH I 9 90 38 HOH HOH . 
E 4 HOH I 10 99 47 HOH HOH . 
E 4 HOH I 11 103 52 HOH HOH . 
E 4 HOH I 12 108 57 HOH HOH . 
E 4 HOH I 13 114 63 HOH HOH . 
E 4 HOH I 14 123 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MG8 . . . C 3 -0.248 19.771 25.345 1 58.67 ? C1 MG8 500 A 1 
HETATM 2 C C2 MG8 . . . C 3 0.844 20.272 26.273 1 58.83 ? C2 MG8 500 A 1 
HETATM 3 C C3 MG8 . . . C 3 2.184 19.521 26.142 1 58.23 ? C3 MG8 500 A 1 
HETATM 4 C C4 MG8 . . . C 3 3.358 20.237 26.846 1 57.06 ? C4 MG8 500 A 1 
HETATM 5 C C5 MG8 . . . C 3 4.719 19.653 26.438 1 55.32 ? C5 MG8 500 A 1 
HETATM 6 C C6 MG8 . . . C 3 5.917 20.122 27.258 1 53.1 ? C6 MG8 500 A 1 
HETATM 7 C C7 MG8 . . . C 3 7.088 19.196 26.954 1 52.51 ? C7 MG8 500 A 1 
HETATM 8 C C8 MG8 . . . C 3 8.404 19.721 27.471 1 51.52 ? C8 MG8 500 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#