data_1Q6Y # _model_server_result.job_id lglh7TJt2RRzQuHp3Ww8IA _model_server_result.datetime_utc '2024-11-19 11:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1Q6Y # _exptl.entry_id 1Q6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.73 _cell.angle_gamma 90 _cell.entry_id 1Q6Y _cell.length_a 92.117 _cell.length_b 66.779 _cell.length_c 73.049 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 92.117 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 323 n n C1 H11 MPD sing 324 n n C1 H12 MPD sing 325 n n C1 H13 MPD sing 326 n n C2 O2 MPD sing 327 n n C2 CM MPD sing 328 n n C2 C3 MPD sing 329 n n O2 HO2 MPD sing 330 n n CM HM1 MPD sing 331 n n CM HM2 MPD sing 332 n n CM HM3 MPD sing 333 n n C3 C4 MPD sing 334 n n C3 H31 MPD sing 335 n n C3 H32 MPD sing 336 n n C4 O4 MPD sing 337 n n C4 C5 MPD sing 338 n n C4 H4 MPD sing 339 n n O4 HO4 MPD sing 340 n n C5 H51 MPD sing 341 n n C5 H52 MPD sing 342 n n C5 H53 MPD sing 343 n n # _atom_sites.entry_id 1Q6Y _atom_sites.fract_transf_matrix[1][1] 0.010856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003681 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 500 500 COA COA . C 3 MPD A 1 600 600 MPD MPD . D 3 MPD A 1 700 700 MPD MPD . E 3 MPD A 1 800 800 MPD MPD . F 3 MPD A 1 900 900 MPD MPD . G 3 MPD A 1 1000 1000 MPD MPD . H 3 MPD A 1 1100 1100 MPD MPD . I 3 MPD A 1 1200 1200 MPD MPD . J 4 HOH A 1 1201 1 HOH HOH . J 4 HOH A 2 1202 2 HOH HOH . J 4 HOH A 3 1203 3 HOH HOH . J 4 HOH A 4 1204 4 HOH HOH . J 4 HOH A 5 1205 5 HOH HOH . J 4 HOH A 6 1206 6 HOH HOH . J 4 HOH A 7 1207 7 HOH HOH . J 4 HOH A 8 1208 8 HOH HOH . J 4 HOH A 9 1209 9 HOH HOH . J 4 HOH A 10 1210 10 HOH HOH . J 4 HOH A 11 1211 11 HOH HOH . J 4 HOH A 12 1212 12 HOH HOH . J 4 HOH A 13 1213 13 HOH HOH . J 4 HOH A 14 1214 14 HOH HOH . J 4 HOH A 15 1215 15 HOH HOH . J 4 HOH A 16 1216 16 HOH HOH . J 4 HOH A 17 1217 17 HOH HOH . J 4 HOH A 18 1218 18 HOH HOH . J 4 HOH A 19 1219 19 HOH HOH . J 4 HOH A 20 1220 20 HOH HOH . J 4 HOH A 21 1221 21 HOH HOH . J 4 HOH A 22 1222 22 HOH HOH . J 4 HOH A 23 1223 23 HOH HOH . J 4 HOH A 24 1224 24 HOH HOH . J 4 HOH A 25 1225 25 HOH HOH . J 4 HOH A 26 1226 26 HOH HOH . J 4 HOH A 27 1227 27 HOH HOH . J 4 HOH A 28 1228 28 HOH HOH . J 4 HOH A 29 1229 29 HOH HOH . J 4 HOH A 30 1230 30 HOH HOH . J 4 HOH A 31 1231 31 HOH HOH . J 4 HOH A 32 1232 32 HOH HOH . J 4 HOH A 33 1233 33 HOH HOH . J 4 HOH A 34 1234 34 HOH HOH . J 4 HOH A 35 1235 35 HOH HOH . J 4 HOH A 36 1236 36 HOH HOH . J 4 HOH A 37 1237 37 HOH HOH . J 4 HOH A 38 1238 38 HOH HOH . J 4 HOH A 39 1239 39 HOH HOH . J 4 HOH A 40 1240 40 HOH HOH . J 4 HOH A 41 1241 41 HOH HOH . J 4 HOH A 42 1242 42 HOH HOH . J 4 HOH A 43 1243 43 HOH HOH . J 4 HOH A 44 1244 44 HOH HOH . J 4 HOH A 45 1245 45 HOH HOH . J 4 HOH A 46 1246 46 HOH HOH . J 4 HOH A 47 1247 47 HOH HOH . J 4 HOH A 48 1248 48 HOH HOH . J 4 HOH A 49 1249 49 HOH HOH . J 4 HOH A 50 1250 50 HOH HOH . J 4 HOH A 51 1251 51 HOH HOH . J 4 HOH A 52 1252 52 HOH HOH . J 4 HOH A 53 1253 53 HOH HOH . J 4 HOH A 54 1254 54 HOH HOH . J 4 HOH A 55 1255 55 HOH HOH . J 4 HOH A 56 1256 56 HOH HOH . J 4 HOH A 57 1257 57 HOH HOH . J 4 HOH A 58 1258 58 HOH HOH . J 4 HOH A 59 1259 59 HOH HOH . J 4 HOH A 60 1260 60 HOH HOH . J 4 HOH A 61 1261 61 HOH HOH . J 4 HOH A 62 1262 62 HOH HOH . J 4 HOH A 63 1263 63 HOH HOH . J 4 HOH A 64 1264 64 HOH HOH . J 4 HOH A 65 1265 65 HOH HOH . J 4 HOH A 66 1266 66 HOH HOH . J 4 HOH A 67 1267 67 HOH HOH . J 4 HOH A 68 1268 68 HOH HOH . J 4 HOH A 69 1269 69 HOH HOH . J 4 HOH A 70 1270 70 HOH HOH . J 4 HOH A 71 1271 71 HOH HOH . J 4 HOH A 72 1272 72 HOH HOH . J 4 HOH A 73 1273 73 HOH HOH . J 4 HOH A 74 1274 74 HOH HOH . J 4 HOH A 75 1275 75 HOH HOH . J 4 HOH A 76 1276 76 HOH HOH . J 4 HOH A 77 1277 77 HOH HOH . J 4 HOH A 78 1278 78 HOH HOH . J 4 HOH A 79 1279 79 HOH HOH . J 4 HOH A 80 1280 80 HOH HOH . J 4 HOH A 81 1281 81 HOH HOH . J 4 HOH A 82 1282 82 HOH HOH . J 4 HOH A 83 1283 83 HOH HOH . J 4 HOH A 84 1284 84 HOH HOH . J 4 HOH A 85 1285 85 HOH HOH . J 4 HOH A 86 1286 86 HOH HOH . J 4 HOH A 87 1287 87 HOH HOH . J 4 HOH A 88 1288 88 HOH HOH . J 4 HOH A 89 1289 89 HOH HOH . J 4 HOH A 90 1290 90 HOH HOH . J 4 HOH A 91 1291 91 HOH HOH . J 4 HOH A 92 1292 92 HOH HOH . J 4 HOH A 93 1293 93 HOH HOH . J 4 HOH A 94 1294 94 HOH HOH . J 4 HOH A 95 1295 95 HOH HOH . J 4 HOH A 96 1296 96 HOH HOH . J 4 HOH A 97 1297 97 HOH HOH . J 4 HOH A 98 1298 98 HOH HOH . J 4 HOH A 99 1299 99 HOH HOH . J 4 HOH A 100 1300 100 HOH HOH . J 4 HOH A 101 1301 101 HOH HOH . J 4 HOH A 102 1302 102 HOH HOH . J 4 HOH A 103 1303 103 HOH HOH . J 4 HOH A 104 1304 104 HOH HOH . J 4 HOH A 105 1305 105 HOH HOH . J 4 HOH A 106 1306 106 HOH HOH . J 4 HOH A 107 1307 107 HOH HOH . J 4 HOH A 108 1308 108 HOH HOH . J 4 HOH A 109 1309 109 HOH HOH . J 4 HOH A 110 1310 110 HOH HOH . J 4 HOH A 111 1311 111 HOH HOH . J 4 HOH A 112 1312 112 HOH HOH . J 4 HOH A 113 1313 113 HOH HOH . J 4 HOH A 114 1314 114 HOH HOH . J 4 HOH A 115 1315 115 HOH HOH . J 4 HOH A 116 1316 116 HOH HOH . J 4 HOH A 117 1317 117 HOH HOH . J 4 HOH A 118 1318 118 HOH HOH . J 4 HOH A 119 1319 119 HOH HOH . J 4 HOH A 120 1320 120 HOH HOH . J 4 HOH A 121 1321 121 HOH HOH . J 4 HOH A 122 1322 122 HOH HOH . J 4 HOH A 123 1323 123 HOH HOH . J 4 HOH A 124 1324 124 HOH HOH . J 4 HOH A 125 1325 125 HOH HOH . J 4 HOH A 126 1326 126 HOH HOH . J 4 HOH A 127 1327 127 HOH HOH . J 4 HOH A 128 1328 128 HOH HOH . J 4 HOH A 129 1329 129 HOH HOH . J 4 HOH A 130 1330 130 HOH HOH . J 4 HOH A 131 1331 131 HOH HOH . J 4 HOH A 132 1332 132 HOH HOH . J 4 HOH A 133 1333 133 HOH HOH . J 4 HOH A 134 1334 134 HOH HOH . J 4 HOH A 135 1335 135 HOH HOH . J 4 HOH A 136 1336 136 HOH HOH . J 4 HOH A 137 1337 137 HOH HOH . J 4 HOH A 138 1338 138 HOH HOH . J 4 HOH A 139 1339 139 HOH HOH . J 4 HOH A 140 1340 140 HOH HOH . J 4 HOH A 141 1341 141 HOH HOH . J 4 HOH A 142 1342 142 HOH HOH . J 4 HOH A 143 1343 143 HOH HOH . J 4 HOH A 144 1344 144 HOH HOH . J 4 HOH A 145 1345 145 HOH HOH . J 4 HOH A 146 1346 146 HOH HOH . J 4 HOH A 147 1347 147 HOH HOH . J 4 HOH A 148 1348 148 HOH HOH . J 4 HOH A 149 1349 149 HOH HOH . J 4 HOH A 150 1350 150 HOH HOH . J 4 HOH A 151 1351 151 HOH HOH . J 4 HOH A 152 1352 152 HOH HOH . J 4 HOH A 153 1353 153 HOH HOH . J 4 HOH A 154 1354 154 HOH HOH . J 4 HOH A 155 1355 155 HOH HOH . J 4 HOH A 156 1356 156 HOH HOH . J 4 HOH A 157 1357 157 HOH HOH . J 4 HOH A 158 1358 158 HOH HOH . J 4 HOH A 159 1359 159 HOH HOH . J 4 HOH A 160 1360 160 HOH HOH . J 4 HOH A 161 1361 161 HOH HOH . J 4 HOH A 162 1362 162 HOH HOH . J 4 HOH A 163 1363 163 HOH HOH . J 4 HOH A 164 1364 164 HOH HOH . J 4 HOH A 165 1365 165 HOH HOH . J 4 HOH A 166 1366 166 HOH HOH . J 4 HOH A 167 1367 167 HOH HOH . J 4 HOH A 168 1368 168 HOH HOH . J 4 HOH A 169 1369 169 HOH HOH . J 4 HOH A 170 1370 170 HOH HOH . J 4 HOH A 171 1371 171 HOH HOH . J 4 HOH A 172 1372 172 HOH HOH . J 4 HOH A 173 1373 173 HOH HOH . J 4 HOH A 174 1374 174 HOH HOH . J 4 HOH A 175 1375 175 HOH HOH . J 4 HOH A 176 1376 176 HOH HOH . J 4 HOH A 177 1377 177 HOH HOH . J 4 HOH A 178 1378 178 HOH HOH . J 4 HOH A 179 1379 179 HOH HOH . J 4 HOH A 180 1380 180 HOH HOH . J 4 HOH A 181 1381 181 HOH HOH . J 4 HOH A 182 1382 182 HOH HOH . J 4 HOH A 183 1383 183 HOH HOH . J 4 HOH A 184 1384 184 HOH HOH . J 4 HOH A 185 1385 185 HOH HOH . J 4 HOH A 186 1386 186 HOH HOH . J 4 HOH A 187 1387 187 HOH HOH . J 4 HOH A 188 1388 188 HOH HOH . J 4 HOH A 189 1389 189 HOH HOH . J 4 HOH A 190 1390 190 HOH HOH . J 4 HOH A 191 1391 191 HOH HOH . J 4 HOH A 192 1392 192 HOH HOH . J 4 HOH A 193 1393 193 HOH HOH . J 4 HOH A 194 1394 194 HOH HOH . J 4 HOH A 195 1395 195 HOH HOH . J 4 HOH A 196 1396 196 HOH HOH . J 4 HOH A 197 1397 197 HOH HOH . J 4 HOH A 198 1398 198 HOH HOH . J 4 HOH A 199 1399 199 HOH HOH . J 4 HOH A 200 1400 200 HOH HOH . J 4 HOH A 201 1401 201 HOH HOH . J 4 HOH A 202 1402 202 HOH HOH . J 4 HOH A 203 1403 203 HOH HOH . J 4 HOH A 204 1404 204 HOH HOH . J 4 HOH A 205 1405 205 HOH HOH . J 4 HOH A 206 1406 206 HOH HOH . J 4 HOH A 207 1407 207 HOH HOH . J 4 HOH A 208 1408 208 HOH HOH . J 4 HOH A 209 1409 209 HOH HOH . J 4 HOH A 210 1410 210 HOH HOH . J 4 HOH A 211 1411 211 HOH HOH . J 4 HOH A 212 1412 212 HOH HOH . J 4 HOH A 213 1413 213 HOH HOH . J 4 HOH A 214 1414 214 HOH HOH . J 4 HOH A 215 1415 215 HOH HOH . J 4 HOH A 216 1416 216 HOH HOH . J 4 HOH A 217 1417 217 HOH HOH . J 4 HOH A 218 1418 218 HOH HOH . J 4 HOH A 219 1419 219 HOH HOH . J 4 HOH A 220 1420 220 HOH HOH . J 4 HOH A 221 1421 221 HOH HOH . J 4 HOH A 222 1422 222 HOH HOH . J 4 HOH A 223 1423 223 HOH HOH . J 4 HOH A 224 1424 224 HOH HOH . J 4 HOH A 225 1425 225 HOH HOH . J 4 HOH A 226 1426 226 HOH HOH . J 4 HOH A 227 1427 227 HOH HOH . J 4 HOH A 228 1428 228 HOH HOH . J 4 HOH A 229 1429 229 HOH HOH . J 4 HOH A 230 1430 230 HOH HOH . J 4 HOH A 231 1431 231 HOH HOH . J 4 HOH A 232 1432 232 HOH HOH . J 4 HOH A 233 1433 233 HOH HOH . J 4 HOH A 234 1434 234 HOH HOH . J 4 HOH A 235 1435 235 HOH HOH . J 4 HOH A 236 1436 236 HOH HOH . J 4 HOH A 237 1437 237 HOH HOH . J 4 HOH A 238 1438 238 HOH HOH . J 4 HOH A 239 1439 239 HOH HOH . J 4 HOH A 240 1440 240 HOH HOH . J 4 HOH A 241 1441 241 HOH HOH . J 4 HOH A 242 1442 242 HOH HOH . J 4 HOH A 243 1443 243 HOH HOH . J 4 HOH A 244 1444 244 HOH HOH . J 4 HOH A 245 1445 245 HOH HOH . J 4 HOH A 246 1446 246 HOH HOH . J 4 HOH A 247 1447 247 HOH HOH . J 4 HOH A 248 1448 248 HOH HOH . J 4 HOH A 249 1449 249 HOH HOH . J 4 HOH A 250 1450 250 HOH HOH . J 4 HOH A 251 1451 251 HOH HOH . J 4 HOH A 252 1452 252 HOH HOH . J 4 HOH A 253 1453 253 HOH HOH . J 4 HOH A 254 1454 254 HOH HOH . J 4 HOH A 255 1455 255 HOH HOH . J 4 HOH A 256 1456 256 HOH HOH . J 4 HOH A 257 1457 257 HOH HOH . J 4 HOH A 258 1458 258 HOH HOH . J 4 HOH A 259 1459 259 HOH HOH . J 4 HOH A 260 1460 260 HOH HOH . J 4 HOH A 261 1461 261 HOH HOH . J 4 HOH A 262 1462 262 HOH HOH . J 4 HOH A 263 1463 263 HOH HOH . J 4 HOH A 264 1464 264 HOH HOH . J 4 HOH A 265 1465 265 HOH HOH . J 4 HOH A 266 1466 266 HOH HOH . J 4 HOH A 267 1467 267 HOH HOH . J 4 HOH A 268 1468 268 HOH HOH . J 4 HOH A 269 1469 269 HOH HOH . J 4 HOH A 270 1470 270 HOH HOH . J 4 HOH A 271 1471 271 HOH HOH . J 4 HOH A 272 1472 272 HOH HOH . J 4 HOH A 273 1473 273 HOH HOH . J 4 HOH A 274 1474 274 HOH HOH . J 4 HOH A 275 1475 275 HOH HOH . J 4 HOH A 276 1476 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 56.907 -31.631 -1.011 1 40.8 ? C1 MPD 600 A 1 HETATM 2 C C2 MPD . . . C 3 57.295 -30.283 -0.448 1 39.76 ? C2 MPD 600 A 1 HETATM 3 O O2 MPD . . . C 3 57.835 -29.454 -1.542 1 37.78 ? O2 MPD 600 A 1 HETATM 4 C CM MPD . . . C 3 56.082 -29.508 0.082 1 38.3 ? CM MPD 600 A 1 HETATM 5 C C3 MPD . . . C 3 58.423 -30.5 0.578 1 40.92 ? C3 MPD 600 A 1 HETATM 6 C C4 MPD . . . C 3 58.149 -31.449 1.736 0.5 44.89 ? C4 MPD 600 A 1 HETATM 7 O O4 MPD . . . C 3 58.11 -32.749 1.223 0.5 48.32 ? O4 MPD 600 A 1 HETATM 8 C C5 MPD . . . C 3 59.248 -31.382 2.797 0.5 46.35 ? C5 MPD 600 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #