data_1Q78
#
_model_server_result.job_id            19daFP76ltBeQbIf_CYG8w 
_model_server_result.datetime_utc      '2024-11-25 10:42:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    1Q78 
#
_exptl.entry_id    1Q78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q78 
_cell.length_a            57.52 
_cell.length_b            63.81 
_cell.length_c            180.42 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 35 A ASP 35 1_555 A N CSD 36 A CSD 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSD 36 A CSD 36 1_555 A N LEU 37 A LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C ARG 196 A ARG 196 1_555 A N CSD 197 A CSD 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C CSD 197 A CSD 197 1_555 A N ILE 198 A ILE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A OD1 ASP 113 A ASP 113 1_555 B MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? 
metalc ? metalc2 A OD2 ASP 115 A ASP 115 1_555 B MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc3 C O1B 3AT . A 3AT 1000 1_555 B MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? 
metalc ? metalc4 C O3B 3AT . A 3AT 1000 1_555 B MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc5 C O5' 3AT . A 3AT 1000 1_555 B MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                3AT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CORDYCEPIN TRIPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G 3AT doub 1 n n 
PG O2G 3AT sing 2 n n 
PG O3G 3AT sing 3 n n 
PG O3B 3AT sing 4 n n 
O2G HOG2 3AT sing 5 n n 
O3G HOG3 3AT sing 6 n n 
PB O1B 3AT doub 7 n n 
PB O2B 3AT sing 8 n n 
PB O3B 3AT sing 9 n n 
PB O3A 3AT sing 10 n n 
O2B HOB2 3AT sing 11 n n 
PA O1A 3AT doub 12 n n 
PA O2A 3AT sing 13 n n 
PA O3A 3AT sing 14 n n 
PA O5' 3AT sing 15 n n 
O2A HOA2 3AT sing 16 n n 
O5' C5' 3AT sing 17 n n 
C5' C4' 3AT sing 18 n n 
C5' "H5'1" 3AT sing 19 n n 
C5' "H5'2" 3AT sing 20 n n 
C4' O4' 3AT sing 21 n n 
C4' C3' 3AT sing 22 n n 
C4' H4' 3AT sing 23 n n 
O4' C1' 3AT sing 24 n n 
C3' C2' 3AT sing 25 n n 
C3' "H3'1" 3AT sing 26 n n 
C3' "H3'2" 3AT sing 27 n n 
C2' O2' 3AT sing 28 n n 
C2' C1' 3AT sing 29 n n 
C2' "H2'1" 3AT sing 30 n n 
O2' HO2' 3AT sing 31 n n 
C1' N9 3AT sing 32 n n 
C1' H1' 3AT sing 33 n n 
N9 C8 3AT sing 34 n y 
N9 C4 3AT sing 35 n y 
C8 N7 3AT doub 36 n y 
C8 H8 3AT sing 37 n n 
N7 C5 3AT sing 38 n y 
C5 C6 3AT sing 39 n y 
C5 C4 3AT doub 40 n y 
C6 N6 3AT sing 41 n n 
C6 N1 3AT doub 42 n y 
N6 HN61 3AT sing 43 n n 
N6 HN62 3AT sing 44 n n 
N1 C2 3AT sing 45 n y 
C2 N3 3AT doub 46 n y 
C2 H2 3AT sing 47 n n 
N3 C4 3AT sing 48 n y 
#
_atom_sites.entry_id                     1Q78 
_atom_sites.fract_transf_matrix[1][1]    0.017385 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015672 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1002 1002 MG MG . 
C 3 3AT A 1 1000 1000 3AT 3AT . 
D 4 HOH A 1 2000 2000 HOH TIP . 
D 4 HOH A 2 2001 2001 HOH TIP . 
D 4 HOH A 3 2002 2002 HOH TIP . 
D 4 HOH A 4 2003 2003 HOH TIP . 
D 4 HOH A 5 2004 2004 HOH TIP . 
D 4 HOH A 6 2005 2005 HOH TIP . 
D 4 HOH A 7 2006 2006 HOH TIP . 
D 4 HOH A 8 2007 2007 HOH TIP . 
D 4 HOH A 9 2008 2008 HOH TIP . 
D 4 HOH A 10 2009 2009 HOH TIP . 
D 4 HOH A 11 2010 2010 HOH TIP . 
D 4 HOH A 12 2011 2011 HOH TIP . 
D 4 HOH A 13 2012 2012 HOH TIP . 
D 4 HOH A 14 2014 2014 HOH TIP . 
D 4 HOH A 15 2015 2015 HOH TIP . 
D 4 HOH A 16 2016 2016 HOH TIP . 
D 4 HOH A 17 2017 2017 HOH TIP . 
D 4 HOH A 18 2018 2018 HOH TIP . 
D 4 HOH A 19 2019 2019 HOH TIP . 
D 4 HOH A 20 2020 2020 HOH TIP . 
D 4 HOH A 21 2021 2021 HOH TIP . 
D 4 HOH A 22 2022 2022 HOH TIP . 
D 4 HOH A 23 2023 2023 HOH TIP . 
D 4 HOH A 24 2024 2024 HOH TIP . 
D 4 HOH A 25 2025 2025 HOH TIP . 
D 4 HOH A 26 2026 2026 HOH TIP . 
D 4 HOH A 27 2027 2027 HOH TIP . 
D 4 HOH A 28 2028 2028 HOH TIP . 
D 4 HOH A 29 2029 2029 HOH TIP . 
D 4 HOH A 30 2030 2030 HOH TIP . 
D 4 HOH A 31 2031 2031 HOH TIP . 
D 4 HOH A 32 2032 2032 HOH TIP . 
D 4 HOH A 33 2033 2033 HOH TIP . 
D 4 HOH A 34 2034 2034 HOH TIP . 
D 4 HOH A 35 2035 2035 HOH TIP . 
D 4 HOH A 36 2036 2036 HOH TIP . 
D 4 HOH A 37 2037 2037 HOH TIP . 
D 4 HOH A 38 2038 2038 HOH TIP . 
D 4 HOH A 39 2039 2039 HOH TIP . 
D 4 HOH A 40 2040 2040 HOH TIP . 
D 4 HOH A 41 2041 2041 HOH TIP . 
D 4 HOH A 42 2042 2042 HOH TIP . 
D 4 HOH A 43 2043 2043 HOH TIP . 
D 4 HOH A 44 2044 2044 HOH TIP . 
D 4 HOH A 45 2045 2045 HOH TIP . 
D 4 HOH A 46 2046 2046 HOH TIP . 
D 4 HOH A 47 2047 2047 HOH TIP . 
D 4 HOH A 48 2048 2048 HOH TIP . 
D 4 HOH A 49 2049 2049 HOH TIP . 
D 4 HOH A 50 2050 2050 HOH TIP . 
D 4 HOH A 51 2051 2051 HOH TIP . 
D 4 HOH A 52 2052 2052 HOH TIP . 
D 4 HOH A 53 2053 2053 HOH TIP . 
D 4 HOH A 54 2054 2054 HOH TIP . 
D 4 HOH A 55 2055 2055 HOH TIP . 
D 4 HOH A 56 2056 2056 HOH TIP . 
D 4 HOH A 57 2057 2057 HOH TIP . 
D 4 HOH A 58 2058 2058 HOH TIP . 
D 4 HOH A 59 2059 2059 HOH TIP . 
D 4 HOH A 60 2060 2060 HOH TIP . 
D 4 HOH A 61 2061 2061 HOH TIP . 
D 4 HOH A 62 2062 2062 HOH TIP . 
D 4 HOH A 63 2063 2063 HOH TIP . 
D 4 HOH A 64 2064 2064 HOH TIP . 
D 4 HOH A 65 2065 2065 HOH TIP . 
D 4 HOH A 66 2066 2066 HOH TIP . 
D 4 HOH A 67 2067 2067 HOH TIP . 
D 4 HOH A 68 2068 2068 HOH TIP . 
D 4 HOH A 69 2069 2069 HOH TIP . 
D 4 HOH A 70 2070 2070 HOH TIP . 
D 4 HOH A 71 2071 2071 HOH TIP . 
D 4 HOH A 72 2072 2072 HOH TIP . 
D 4 HOH A 73 2073 2073 HOH TIP . 
D 4 HOH A 74 2074 2074 HOH TIP . 
D 4 HOH A 75 2075 2075 HOH TIP . 
D 4 HOH A 76 2076 2076 HOH TIP . 
D 4 HOH A 77 2077 2077 HOH TIP . 
D 4 HOH A 78 2078 2078 HOH TIP . 
D 4 HOH A 79 2079 2079 HOH TIP . 
D 4 HOH A 80 2080 2080 HOH TIP . 
D 4 HOH A 81 2081 2081 HOH TIP . 
D 4 HOH A 82 2082 2082 HOH TIP . 
D 4 HOH A 83 2083 2083 HOH TIP . 
D 4 HOH A 84 2084 2084 HOH TIP . 
D 4 HOH A 85 2085 2085 HOH TIP . 
D 4 HOH A 86 2086 2086 HOH TIP . 
D 4 HOH A 87 2087 2087 HOH TIP . 
D 4 HOH A 88 2088 2088 HOH TIP . 
D 4 HOH A 89 2089 2089 HOH TIP . 
D 4 HOH A 90 2090 2090 HOH TIP . 
D 4 HOH A 91 2091 2091 HOH TIP . 
D 4 HOH A 92 2092 2092 HOH TIP . 
D 4 HOH A 93 2093 2093 HOH TIP . 
D 4 HOH A 94 2094 2094 HOH TIP . 
D 4 HOH A 95 2095 2095 HOH TIP . 
D 4 HOH A 96 2096 2096 HOH TIP . 
D 4 HOH A 97 2097 2097 HOH TIP . 
D 4 HOH A 98 2098 2098 HOH TIP . 
D 4 HOH A 99 2099 2099 HOH TIP . 
D 4 HOH A 100 2100 2100 HOH TIP . 
D 4 HOH A 101 2101 2101 HOH TIP . 
D 4 HOH A 102 2102 2102 HOH TIP . 
D 4 HOH A 103 2103 2103 HOH TIP . 
D 4 HOH A 104 2104 2104 HOH TIP . 
D 4 HOH A 105 2105 2105 HOH TIP . 
D 4 HOH A 106 2106 2106 HOH TIP . 
D 4 HOH A 107 2107 2107 HOH TIP . 
D 4 HOH A 108 2108 2108 HOH TIP . 
D 4 HOH A 109 2109 2109 HOH TIP . 
D 4 HOH A 110 2110 2110 HOH TIP . 
D 4 HOH A 111 2111 2111 HOH TIP . 
D 4 HOH A 112 2112 2112 HOH TIP . 
D 4 HOH A 113 2113 2113 HOH TIP . 
D 4 HOH A 114 2114 2114 HOH TIP . 
D 4 HOH A 115 2115 2115 HOH TIP . 
D 4 HOH A 116 2116 2116 HOH TIP . 
D 4 HOH A 117 2117 2117 HOH TIP . 
D 4 HOH A 118 2118 2118 HOH TIP . 
D 4 HOH A 119 2119 2119 HOH TIP . 
D 4 HOH A 120 2120 2120 HOH TIP . 
D 4 HOH A 121 2121 2121 HOH TIP . 
D 4 HOH A 122 2122 2122 HOH TIP . 
D 4 HOH A 123 2123 2123 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG 3AT . . . C 3 31.012 40.68 -18.214 1 45.58 ? PG 3AT 1000 A 1 
HETATM 2 O O1G 3AT . . . C 3 30.7 39.807 -19.376 1 44.27 ? O1G 3AT 1000 A 1 
HETATM 3 O O2G 3AT . . . C 3 29.926 41.071 -17.289 1 47.27 ? O2G 3AT 1000 A 1 
HETATM 4 O O3G 3AT . . . C 3 32.09 39.989 -17.393 1 46.63 ? O3G 3AT 1000 A 1 
HETATM 5 P PB 3AT . . . C 3 30.958 43.377 -19.17 1 47.35 ? PB 3AT 1000 A 1 
HETATM 6 O O1B 3AT . . . C 3 31.911 44.462 -18.826 1 48.14 ? O1B 3AT 1000 A 1 
HETATM 7 O O2B 3AT . . . C 3 29.589 43.403 -18.599 1 47.16 ? O2B 3AT 1000 A 1 
HETATM 8 O O3B 3AT . . . C 3 31.646 42.012 -18.759 1 47.68 ? O3B 3AT 1000 A 1 
HETATM 9 P PA 3AT . . . C 3 31.867 42.729 -21.826 1 50.88 ? PA 3AT 1000 A 1 
HETATM 10 O O1A 3AT . . . C 3 32.273 41.367 -21.398 1 53.21 ? O1A 3AT 1000 A 1 
HETATM 11 O O2A 3AT . . . C 3 31.276 42.917 -23.169 1 52.63 ? O2A 3AT 1000 A 1 
HETATM 12 O O3A 3AT . . . C 3 30.836 43.299 -20.756 1 49.52 ? O3A 3AT 1000 A 1 
HETATM 13 O O5' 3AT . . . C 3 33.17 43.637 -21.754 1 52.3 ? O5' 3AT 1000 A 1 
HETATM 14 C C5' 3AT . . . C 3 33.34 44.731 -22.642 1 51.48 ? C5' 3AT 1000 A 1 
HETATM 15 C C4' 3AT . . . C 3 33.042 46.021 -21.925 1 51.36 ? C4' 3AT 1000 A 1 
HETATM 16 O O4' 3AT . . . C 3 33.127 47.107 -22.883 1 51.67 ? O4' 3AT 1000 A 1 
HETATM 17 C C3' 3AT . . . C 3 31.63 46.092 -21.358 1 52.01 ? C3' 3AT 1000 A 1 
HETATM 18 C C2' 3AT . . . C 3 31.319 47.578 -21.433 1 51.83 ? C2' 3AT 1000 A 1 
HETATM 19 O O2' 3AT . . . C 3 31.878 48.294 -20.358 1 54.12 ? O2' 3AT 1000 A 1 
HETATM 20 C C1' 3AT . . . C 3 32.003 47.958 -22.746 1 51.25 ? C1' 3AT 1000 A 1 
HETATM 21 N N9 3AT . . . C 3 31.124 47.722 -23.887 1 49.1 ? N9 3AT 1000 A 1 
HETATM 22 C C8 3AT . . . C 3 31.025 46.582 -24.647 1 48.44 ? C8 3AT 1000 A 1 
HETATM 23 N N7 3AT . . . C 3 30.105 46.645 -25.578 1 49.7 ? N7 3AT 1000 A 1 
HETATM 24 C C5 3AT . . . C 3 29.568 47.918 -25.429 1 49.53 ? C5 3AT 1000 A 1 
HETATM 25 C C6 3AT . . . C 3 28.543 48.598 -26.111 1 48.76 ? C6 3AT 1000 A 1 
HETATM 26 N N6 3AT . . . C 3 27.832 48.06 -27.104 1 45.67 ? N6 3AT 1000 A 1 
HETATM 27 N N1 3AT . . . C 3 28.266 49.864 -25.724 1 49.26 ? N1 3AT 1000 A 1 
HETATM 28 C C2 3AT . . . C 3 28.967 50.394 -24.71 1 49.59 ? C2 3AT 1000 A 1 
HETATM 29 N N3 3AT . . . C 3 29.944 49.851 -23.985 1 49.08 ? N3 3AT 1000 A 1 
HETATM 30 C C4 3AT . . . C 3 30.199 48.597 -24.4 1 49.36 ? C4 3AT 1000 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#