data_1Q8O # _model_server_result.job_id P3ytFbKdHkus7-HCpCFhBA _model_server_result.datetime_utc '2025-07-03 20:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":261}' # _entry.id 1Q8O # _exptl.entry_id 1Q8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q8O _cell.length_a 56.32 _cell.length_b 82.98 _cell.length_c 122 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MMA _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C MMA 1 C 1 MMA A 252 MMA 2 n C MAN 2 C 2 MAN A 251 MAN 2 n D MMA 1 D 1 MMA B 252 MMA 2 n D MAN 2 D 2 MAN B 251 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C O2 MMA . C MMA 1 1_555 C C1 MAN . C MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale4 D O2 MMA . D MMA 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? metalc ? metalc1 A OE1 GLU 128 A GLU 128 1_555 E MN MN . A MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A OD2 ASP 130 A ASP 130 1_555 E MN MN . A MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc3 A OD1 ASP 130 A ASP 130 1_555 F CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A OD2 ASP 130 A ASP 130 1_555 F CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 A O PHE 132 A PHE 132 1_555 F CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 A OD1 ASN 138 A ASN 138 1_555 F CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 A OD1 ASP 141 A ASP 141 1_555 E MN MN . A MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 A OD2 ASP 141 A ASP 141 1_555 F CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc9 A NE2 HIS 146 A HIS 146 1_555 E MN MN . A MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc10 E MN MN . A MN 261 1_555 I O HOH . A HOH 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 E MN MN . A MN 261 1_555 I O HOH . A HOH 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc12 F CA CA . A CA 262 1_555 I O HOH . A HOH 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc13 F CA CA . A CA 262 1_555 I O HOH . A HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 B OE1 GLU 128 B GLU 128 1_555 G MN MN . B MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc15 B OD2 ASP 130 B ASP 130 1_555 G MN MN . B MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc16 B OD2 ASP 130 B ASP 130 1_555 H CA CA . B CA 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc17 B OD1 ASP 130 B ASP 130 1_555 H CA CA . B CA 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc18 B O PHE 132 B PHE 132 1_555 H CA CA . B CA 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc19 B OD1 ASN 138 B ASN 138 1_555 H CA CA . B CA 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc20 B OD1 ASP 141 B ASP 141 1_555 G MN MN . B MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc21 B OD2 ASP 141 B ASP 141 1_555 H CA CA . B CA 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc22 B NE2 HIS 146 B HIS 146 1_555 G MN MN . B MN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc23 G MN MN . B MN 261 1_555 J O HOH . B HOH 1263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc24 G MN MN . B MN 261 1_555 J O HOH . B HOH 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc25 H CA CA . B CA 1262 1_555 J O HOH . B HOH 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc26 H CA CA . B CA 1262 1_555 J O HOH . B HOH 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Q8O _atom_sites.fract_transf_matrix[1][1] 0.017756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 261 261 MN MN . F 4 CA A 1 262 262 CA CA . G 3 MN B 1 261 261 MN MN . H 4 CA B 1 1262 262 CA CA . I 5 HOH A 1 263 1 HOH HOH . I 5 HOH A 2 264 5 HOH HOH . I 5 HOH A 3 265 7 HOH HOH . I 5 HOH A 4 266 10 HOH HOH . I 5 HOH A 5 267 12 HOH HOH . I 5 HOH A 6 268 14 HOH HOH . I 5 HOH A 7 269 20 HOH HOH . I 5 HOH A 8 270 22 HOH HOH . I 5 HOH A 9 271 23 HOH HOH . I 5 HOH A 10 272 24 HOH HOH . I 5 HOH A 11 273 26 HOH HOH . I 5 HOH A 12 274 31 HOH HOH . I 5 HOH A 13 275 33 HOH HOH . I 5 HOH A 14 276 36 HOH HOH . I 5 HOH A 15 277 37 HOH HOH . I 5 HOH A 16 278 39 HOH HOH . I 5 HOH A 17 279 40 HOH HOH . I 5 HOH A 18 280 41 HOH HOH . I 5 HOH A 19 281 42 HOH HOH . I 5 HOH A 20 282 44 HOH HOH . I 5 HOH A 21 283 47 HOH HOH . I 5 HOH A 22 284 48 HOH HOH . I 5 HOH A 23 285 49 HOH HOH . I 5 HOH A 24 286 51 HOH HOH . I 5 HOH A 25 287 52 HOH HOH . I 5 HOH A 26 288 53 HOH HOH . I 5 HOH A 27 289 55 HOH HOH . I 5 HOH A 28 290 62 HOH HOH . I 5 HOH A 29 291 68 HOH HOH . I 5 HOH A 30 292 72 HOH HOH . I 5 HOH A 31 293 75 HOH HOH . I 5 HOH A 32 294 77 HOH HOH . I 5 HOH A 33 295 78 HOH HOH . I 5 HOH A 34 296 80 HOH HOH . I 5 HOH A 35 297 81 HOH HOH . I 5 HOH A 36 298 83 HOH HOH . I 5 HOH A 37 299 88 HOH HOH . I 5 HOH A 38 300 94 HOH HOH . I 5 HOH A 39 301 95 HOH HOH . I 5 HOH A 40 302 96 HOH HOH . I 5 HOH A 41 303 99 HOH HOH . I 5 HOH A 42 304 103 HOH HOH . I 5 HOH A 43 305 104 HOH HOH . I 5 HOH A 44 306 105 HOH HOH . I 5 HOH A 45 307 106 HOH HOH . I 5 HOH A 46 308 107 HOH HOH . I 5 HOH A 47 309 108 HOH HOH . I 5 HOH A 48 310 109 HOH HOH . I 5 HOH A 49 311 110 HOH HOH . I 5 HOH A 50 312 111 HOH HOH . I 5 HOH A 51 313 112 HOH HOH . I 5 HOH A 52 314 113 HOH HOH . I 5 HOH A 53 315 116 HOH HOH . I 5 HOH A 54 316 117 HOH HOH . I 5 HOH A 55 317 118 HOH HOH . I 5 HOH A 56 318 119 HOH HOH . I 5 HOH A 57 319 120 HOH HOH . I 5 HOH A 58 320 121 HOH HOH . I 5 HOH A 59 321 122 HOH HOH . I 5 HOH A 60 322 123 HOH HOH . I 5 HOH A 61 323 126 HOH HOH . I 5 HOH A 62 324 127 HOH HOH . I 5 HOH A 63 325 128 HOH HOH . I 5 HOH A 64 326 129 HOH HOH . I 5 HOH A 65 327 130 HOH HOH . I 5 HOH A 66 328 131 HOH HOH . I 5 HOH A 67 329 132 HOH HOH . I 5 HOH A 68 330 133 HOH HOH . I 5 HOH A 69 331 134 HOH HOH . I 5 HOH A 70 332 135 HOH HOH . I 5 HOH A 71 333 136 HOH HOH . I 5 HOH A 72 334 137 HOH HOH . I 5 HOH A 73 335 138 HOH HOH . I 5 HOH A 74 336 139 HOH HOH . I 5 HOH A 75 337 140 HOH HOH . I 5 HOH A 76 338 141 HOH HOH . I 5 HOH A 77 339 142 HOH HOH . I 5 HOH A 78 340 143 HOH HOH . I 5 HOH A 79 341 144 HOH HOH . I 5 HOH A 80 342 145 HOH HOH . I 5 HOH A 81 343 146 HOH HOH . I 5 HOH A 82 344 147 HOH HOH . I 5 HOH A 83 345 149 HOH HOH . I 5 HOH A 84 346 150 HOH HOH . I 5 HOH A 85 347 151 HOH HOH . I 5 HOH A 86 348 152 HOH HOH . I 5 HOH A 87 349 153 HOH HOH . I 5 HOH A 88 350 154 HOH HOH . I 5 HOH A 89 351 160 HOH HOH . J 5 HOH B 1 1263 2 HOH HOH . J 5 HOH B 2 1264 3 HOH HOH . J 5 HOH B 3 1265 4 HOH HOH . J 5 HOH B 4 1266 6 HOH HOH . J 5 HOH B 5 1267 8 HOH HOH . J 5 HOH B 6 1268 9 HOH HOH . J 5 HOH B 7 1269 11 HOH HOH . J 5 HOH B 8 1270 13 HOH HOH . J 5 HOH B 9 1271 15 HOH HOH . J 5 HOH B 10 1272 16 HOH HOH . J 5 HOH B 11 1273 17 HOH HOH . J 5 HOH B 12 1274 18 HOH HOH . J 5 HOH B 13 1275 19 HOH HOH . J 5 HOH B 14 1276 21 HOH HOH . J 5 HOH B 15 1277 25 HOH HOH . J 5 HOH B 16 1278 27 HOH HOH . J 5 HOH B 17 1279 28 HOH HOH . J 5 HOH B 18 1280 29 HOH HOH . J 5 HOH B 19 1281 30 HOH HOH . J 5 HOH B 20 1282 32 HOH HOH . J 5 HOH B 21 1283 34 HOH HOH . J 5 HOH B 22 1284 35 HOH HOH . J 5 HOH B 23 1285 38 HOH HOH . J 5 HOH B 24 1286 43 HOH HOH . J 5 HOH B 25 1287 45 HOH HOH . J 5 HOH B 26 1288 46 HOH HOH . J 5 HOH B 27 1289 50 HOH HOH . J 5 HOH B 28 1290 54 HOH HOH . J 5 HOH B 29 1291 56 HOH HOH . J 5 HOH B 30 1292 57 HOH HOH . J 5 HOH B 31 1293 58 HOH HOH . J 5 HOH B 32 1294 59 HOH HOH . J 5 HOH B 33 1295 60 HOH HOH . J 5 HOH B 34 1296 61 HOH HOH . J 5 HOH B 35 1297 63 HOH HOH . J 5 HOH B 36 1298 64 HOH HOH . J 5 HOH B 37 1299 65 HOH HOH . J 5 HOH B 38 1300 66 HOH HOH . J 5 HOH B 39 1301 67 HOH HOH . J 5 HOH B 40 1302 69 HOH HOH . J 5 HOH B 41 1303 70 HOH HOH . J 5 HOH B 42 1304 71 HOH HOH . J 5 HOH B 43 1305 73 HOH HOH . J 5 HOH B 44 1306 74 HOH HOH . J 5 HOH B 45 1307 76 HOH HOH . J 5 HOH B 46 1308 79 HOH HOH . J 5 HOH B 47 1309 82 HOH HOH . J 5 HOH B 48 1310 84 HOH HOH . J 5 HOH B 49 1311 85 HOH HOH . J 5 HOH B 50 1312 86 HOH HOH . J 5 HOH B 51 1313 87 HOH HOH . J 5 HOH B 52 1314 89 HOH HOH . J 5 HOH B 53 1315 90 HOH HOH . J 5 HOH B 54 1316 91 HOH HOH . J 5 HOH B 55 1317 92 HOH HOH . J 5 HOH B 56 1318 93 HOH HOH . J 5 HOH B 57 1319 97 HOH HOH . J 5 HOH B 58 1320 98 HOH HOH . J 5 HOH B 59 1321 100 HOH HOH . J 5 HOH B 60 1322 101 HOH HOH . J 5 HOH B 61 1323 102 HOH HOH . J 5 HOH B 62 1324 114 HOH HOH . J 5 HOH B 63 1325 115 HOH HOH . J 5 HOH B 64 1326 124 HOH HOH . J 5 HOH B 65 1327 125 HOH HOH . J 5 HOH B 66 1328 148 HOH HOH . J 5 HOH B 67 1329 155 HOH HOH . J 5 HOH B 68 1330 156 HOH HOH . J 5 HOH B 69 1331 157 HOH HOH . J 5 HOH B 70 1332 158 HOH HOH . J 5 HOH B 71 1333 159 HOH HOH . J 5 HOH B 72 1334 161 HOH HOH . J 5 HOH B 73 1335 162 HOH HOH . J 5 HOH B 74 1336 163 HOH HOH . J 5 HOH B 75 1337 164 HOH HOH . J 5 HOH B 76 1338 165 HOH HOH . J 5 HOH B 77 1339 166 HOH HOH . J 5 HOH B 78 1340 167 HOH HOH . J 5 HOH B 79 1341 168 HOH HOH . J 5 HOH B 80 1342 169 HOH HOH . J 5 HOH B 81 1343 170 HOH HOH . J 5 HOH B 82 1344 171 HOH HOH . J 5 HOH B 83 1345 172 HOH HOH . J 5 HOH B 84 1346 173 HOH HOH . J 5 HOH B 85 1347 174 HOH HOH . J 5 HOH B 86 1348 175 HOH HOH . J 5 HOH B 87 1349 176 HOH HOH . J 5 HOH B 88 1350 177 HOH HOH . J 5 HOH B 89 1351 178 HOH HOH . J 5 HOH B 90 1352 179 HOH HOH . J 5 HOH B 91 1353 180 HOH HOH . J 5 HOH B 92 1354 181 HOH HOH . J 5 HOH B 93 1355 182 HOH HOH . J 5 HOH B 94 1356 183 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.11 _atom_site.Cartn_y 31.342 _atom_site.Cartn_z 32.248 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 261 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #