data_1Q90
#
_model_server_result.job_id            CIaYKWMi2Hn3cnYmDaN3eA 
_model_server_result.datetime_utc      '2024-11-21 14:04:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":902}' 
#
_entry.id    1Q90 
#
_exptl.entry_id    1Q90 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q90 
_cell.length_a            102.454 
_cell.length_b            171.205 
_cell.length_c            351.009 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA octadecameric 18 author_and_software_defined_assembly 1 
PISA,PQS 36-meric 36 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 102.454 342.41 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.454 0 351.009 
4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 342.41 351.009 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 J N N 
? 10 K N N 
? 10 L N N 
? 10 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 60 C CYS 139 1_555 C SG CYS 75 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A SG CYS 21 A CYS 21 1_555 J CAB HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
covale ? covale2 A SG CYS 24 A CYS 24 1_555 J CAC HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale3 B SG CYS 35 B CYS 35 1_555 K CAB HEC . B HEC 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
metalc ? metalc1 A N TYR 1 A TYR 1 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 B NE2 HIS 86 B HIS 86 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc5 B NE2 HIS 187 B HIS 187 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc7 K FE HEC . B HEC 903 1_555 V O HOH . B HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc8 C SG CYS 55 C CYS 134 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc9 C ND1 HIS 57 C HIS 136 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc10 C SG CYS 73 C CYS 152 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc11 C ND1 HIS 76 C HIS 155 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 375 n n 
FE NB HEC sing 376 n n 
FE NC HEC sing 377 n n 
FE ND HEC sing 378 n n 
CHA C1A HEC doub 379 n n 
CHA C4D HEC sing 380 n n 
CHA HHA HEC sing 381 n n 
CHB C4A HEC doub 382 n n 
CHB C1B HEC sing 383 n n 
CHB HHB HEC sing 384 n n 
CHC C4B HEC doub 385 n n 
CHC C1C HEC sing 386 n n 
CHC HHC HEC sing 387 n n 
CHD C4C HEC doub 388 n n 
CHD C1D HEC sing 389 n n 
CHD HHD HEC sing 390 n n 
NA C1A HEC sing 391 n y 
NA C4A HEC sing 392 n y 
C1A C2A HEC sing 393 n y 
C2A C3A HEC doub 394 n y 
C2A CAA HEC sing 395 n n 
C3A C4A HEC sing 396 n y 
C3A CMA HEC sing 397 n n 
CMA HMA1 HEC sing 398 n n 
CMA HMA2 HEC sing 399 n n 
CMA HMA3 HEC sing 400 n n 
CAA CBA HEC sing 401 n n 
CAA HAA1 HEC sing 402 n n 
CAA HAA2 HEC sing 403 n n 
CBA CGA HEC sing 404 n n 
CBA HBA1 HEC sing 405 n n 
CBA HBA2 HEC sing 406 n n 
CGA O1A HEC doub 407 n n 
CGA O2A HEC sing 408 n n 
O2A H2A HEC sing 409 n n 
NB C1B HEC sing 410 n y 
NB C4B HEC sing 411 n y 
C1B C2B HEC doub 412 n y 
C2B C3B HEC sing 413 n y 
C2B CMB HEC sing 414 n n 
C3B C4B HEC sing 415 n y 
C3B CAB HEC doub 416 e n 
CMB HMB1 HEC sing 417 n n 
CMB HMB2 HEC sing 418 n n 
CMB HMB3 HEC sing 419 n n 
CAB CBB HEC sing 420 n n 
CAB HAB HEC sing 421 n n 
CBB HBB1 HEC sing 422 n n 
CBB HBB2 HEC sing 423 n n 
CBB HBB3 HEC sing 424 n n 
NC C1C HEC sing 425 n y 
NC C4C HEC sing 426 n y 
C1C C2C HEC doub 427 n y 
C2C C3C HEC sing 428 n y 
C2C CMC HEC sing 429 n n 
C3C C4C HEC sing 430 n y 
C3C CAC HEC doub 431 e n 
CMC HMC1 HEC sing 432 n n 
CMC HMC2 HEC sing 433 n n 
CMC HMC3 HEC sing 434 n n 
CAC CBC HEC sing 435 n n 
CAC HAC HEC sing 436 n n 
CBC HBC1 HEC sing 437 n n 
CBC HBC2 HEC sing 438 n n 
CBC HBC3 HEC sing 439 n n 
ND C1D HEC sing 440 n y 
ND C4D HEC sing 441 n y 
C1D C2D HEC doub 442 n y 
C2D C3D HEC sing 443 n y 
C2D CMD HEC sing 444 n n 
C3D C4D HEC doub 445 n y 
C3D CAD HEC sing 446 n n 
CMD HMD1 HEC sing 447 n n 
CMD HMD2 HEC sing 448 n n 
CMD HMD3 HEC sing 449 n n 
CAD CBD HEC sing 450 n n 
CAD HAD1 HEC sing 451 n n 
CAD HAD2 HEC sing 452 n n 
CBD CGD HEC sing 453 n n 
CBD HBD1 HEC sing 454 n n 
CBD HBD2 HEC sing 455 n n 
CGD O1D HEC doub 456 n n 
CGD O2D HEC sing 457 n n 
O2D H2D HEC sing 458 n n 
#
_atom_sites.entry_id                     1Q90 
_atom_sites.fract_transf_matrix[1][1]    0.00976 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 10 HEC A 1 900 900 HEC HEM . 
K 10 HEC B 1 903 903 HEC HEM . 
L 10 HEC B 1 901 901 HEC HEM . 
M 10 HEC B 1 902 902 HEC HEM . 
N 11 BCR B 1 904 904 BCR BCR . 
O 12 LFA B 1 960 960 LFA LFA . 
P 13 FES C 1 210 210 FES FES . 
Q 14 CLA D 1 910 910 CLA CLA . 
R 15 TDS D 1 920 920 TDS TDS . 
S 16 LMG D 1 953 953 LMG LMG . 
T 17 SQD R 1 950 950 SQD SQD . 
U 16 LMG L 1 951 951 LMG LMG . 
V 18 HOH B 1 961 961 HOH HOH . 
V 18 HOH B 2 963 963 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . M 10 49.256 160.387 128.33 1 40.37 ? FE HEC 902 B 1 
HETATM 2 C CHA HEC . . . M 10 49.234 159.564 125.008 1 43.01 ? CHA HEC 902 B 1 
HETATM 3 C CHB HEC . . . M 10 51.404 162.967 127.636 1 43.5 ? CHB HEC 902 B 1 
HETATM 4 C CHC HEC . . . M 10 49.309 161.272 131.636 1 43.99 ? CHC HEC 902 B 1 
HETATM 5 C CHD HEC . . . M 10 47.133 157.861 129.021 1 42.87 ? CHD HEC 902 B 1 
HETATM 6 N NA HEC . . . M 10 50.153 161.128 126.644 1 43.12 ? NA HEC 902 B 1 
HETATM 7 C C1A HEC . . . M 10 50.008 160.636 125.354 1 43.13 ? C1A HEC 902 B 1 
HETATM 8 C C2A HEC . . . M 10 50.809 161.443 124.418 1 43.8 ? C2A HEC 902 B 1 
HETATM 9 C C3A HEC . . . M 10 51.425 162.406 125.173 1 44.23 ? C3A HEC 902 B 1 
HETATM 10 C C4A HEC . . . M 10 50.998 162.188 126.563 1 44.05 ? C4A HEC 902 B 1 
HETATM 11 C CMA HEC . . . M 10 52.367 163.507 124.715 1 43.64 ? CMA HEC 902 B 1 
HETATM 12 C CAA HEC . . . M 10 50.913 161.236 122.913 1 44.93 ? CAA HEC 902 B 1 
HETATM 13 C CBA HEC . . . M 10 51.915 160.155 122.545 1 47.75 ? CBA HEC 902 B 1 
HETATM 14 C CGA HEC . . . M 10 51.355 158.766 122.226 1 48.55 ? CGA HEC 902 B 1 
HETATM 15 O O1A HEC . . . M 10 50.12 158.617 122.012 1 49.56 ? O1A HEC 902 B 1 
HETATM 16 O O2A HEC . . . M 10 52.164 157.819 122.194 1 48.75 ? O2A HEC 902 B 1 
HETATM 17 N NB HEC . . . M 10 50.191 161.855 129.422 1 43.17 ? NB HEC 902 B 1 
HETATM 18 C C1B HEC . . . M 10 51.04 162.823 128.95 1 43.03 ? C1B HEC 902 B 1 
HETATM 19 C C2B HEC . . . M 10 51.505 163.681 130.042 1 43.8 ? C2B HEC 902 B 1 
HETATM 20 C C3B HEC . . . M 10 50.902 163.187 131.183 1 44.55 ? C3B HEC 902 B 1 
HETATM 21 C C4B HEC . . . M 10 50.084 162.048 130.773 1 44.45 ? C4B HEC 902 B 1 
HETATM 22 C CMB HEC . . . M 10 52.453 164.853 129.891 1 43.92 ? CMB HEC 902 B 1 
HETATM 23 C CAB HEC . . . M 10 50.998 163.649 132.621 1 45.71 ? CAB HEC 902 B 1 
HETATM 24 C CBB HEC . . . M 10 50.968 164.882 133.124 1 45.69 ? CBB HEC 902 B 1 
HETATM 25 N NC HEC . . . M 10 48.372 159.695 130.055 1 42.58 ? NC HEC 902 B 1 
HETATM 26 C C1C HEC . . . M 10 48.521 160.194 131.313 1 43.5 ? C1C HEC 902 B 1 
HETATM 27 C C2C HEC . . . M 10 47.722 159.409 132.253 1 44 ? C2C HEC 902 B 1 
HETATM 28 C C3C HEC . . . M 10 47.093 158.431 131.505 1 43.73 ? C3C HEC 902 B 1 
HETATM 29 C C4C HEC . . . M 10 47.525 158.635 130.117 1 42.72 ? C4C HEC 902 B 1 
HETATM 30 C CMC HEC . . . M 10 47.653 159.685 133.741 1 42.38 ? CMC HEC 902 B 1 
HETATM 31 C CAC HEC . . . M 10 46.156 157.354 131.934 1 45.07 ? CAC HEC 902 B 1 
HETATM 32 C CBC HEC . . . M 10 46.159 156.664 133.081 1 46.29 ? CBC HEC 902 B 1 
HETATM 33 N ND HEC . . . M 10 48.356 158.97 127.19 1 41.34 ? ND HEC 902 B 1 
HETATM 34 C C1D HEC . . . M 10 47.507 158.001 127.675 1 41.63 ? C1D HEC 902 B 1 
HETATM 35 C C2D HEC . . . M 10 47.063 157.145 126.589 1 39.92 ? C2D HEC 902 B 1 
HETATM 36 C C3D HEC . . . M 10 47.672 157.632 125.429 1 42.37 ? C3D HEC 902 B 1 
HETATM 37 C C4D HEC . . . M 10 48.47 158.783 125.84 1 41.98 ? C4D HEC 902 B 1 
HETATM 38 C CMD HEC . . . M 10 46.137 155.981 126.74 1 35.85 ? CMD HEC 902 B 1 
HETATM 39 C CAD HEC . . . M 10 47.544 157.092 123.999 1 43.82 ? CAD HEC 902 B 1 
HETATM 40 C CBD HEC . . . M 10 48.208 155.706 123.737 1 44.59 ? CBD HEC 902 B 1 
HETATM 41 C CGD HEC . . . M 10 49.048 155.76 122.452 1 47.14 ? CGD HEC 902 B 1 
HETATM 42 O O1D HEC . . . M 10 50.275 155.62 122.546 1 50.2 ? O1D HEC 902 B 1 
HETATM 43 O O2D HEC . . . M 10 48.461 155.942 121.348 1 48.08 ? O2D HEC 902 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#