data_1Q90 # _model_server_result.job_id 2F36xTIaQCnOeUF0hwzjew _model_server_result.datetime_utc '2024-11-21 14:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":903}' # _entry.id 1Q90 # _exptl.entry_id 1Q90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q90 _cell.length_a 102.454 _cell.length_b 171.205 _cell.length_c 351.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octadecameric 18 author_and_software_defined_assembly 1 PISA,PQS 36-meric 36 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 102.454 342.41 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.454 0 351.009 4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 342.41 351.009 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 J N N ? 10 K N N ? 10 L N N ? 10 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 60 C CYS 139 1_555 C SG CYS 75 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 21 A CYS 21 1_555 J CAB HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale2 A SG CYS 24 A CYS 24 1_555 J CAC HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale3 B SG CYS 35 B CYS 35 1_555 K CAB HEC . B HEC 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc1 A N TYR 1 A TYR 1 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 B NE2 HIS 86 B HIS 86 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 B NE2 HIS 187 B HIS 187 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 K FE HEC . B HEC 903 1_555 V O HOH . B HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 C SG CYS 55 C CYS 134 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 C ND1 HIS 57 C HIS 136 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc10 C SG CYS 73 C CYS 152 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc11 C ND1 HIS 76 C HIS 155 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 375 n n FE NB HEC sing 376 n n FE NC HEC sing 377 n n FE ND HEC sing 378 n n CHA C1A HEC doub 379 n n CHA C4D HEC sing 380 n n CHA HHA HEC sing 381 n n CHB C4A HEC doub 382 n n CHB C1B HEC sing 383 n n CHB HHB HEC sing 384 n n CHC C4B HEC doub 385 n n CHC C1C HEC sing 386 n n CHC HHC HEC sing 387 n n CHD C4C HEC doub 388 n n CHD C1D HEC sing 389 n n CHD HHD HEC sing 390 n n NA C1A HEC sing 391 n y NA C4A HEC sing 392 n y C1A C2A HEC sing 393 n y C2A C3A HEC doub 394 n y C2A CAA HEC sing 395 n n C3A C4A HEC sing 396 n y C3A CMA HEC sing 397 n n CMA HMA1 HEC sing 398 n n CMA HMA2 HEC sing 399 n n CMA HMA3 HEC sing 400 n n CAA CBA HEC sing 401 n n CAA HAA1 HEC sing 402 n n CAA HAA2 HEC sing 403 n n CBA CGA HEC sing 404 n n CBA HBA1 HEC sing 405 n n CBA HBA2 HEC sing 406 n n CGA O1A HEC doub 407 n n CGA O2A HEC sing 408 n n O2A H2A HEC sing 409 n n NB C1B HEC sing 410 n y NB C4B HEC sing 411 n y C1B C2B HEC doub 412 n y C2B C3B HEC sing 413 n y C2B CMB HEC sing 414 n n C3B C4B HEC sing 415 n y C3B CAB HEC doub 416 e n CMB HMB1 HEC sing 417 n n CMB HMB2 HEC sing 418 n n CMB HMB3 HEC sing 419 n n CAB CBB HEC sing 420 n n CAB HAB HEC sing 421 n n CBB HBB1 HEC sing 422 n n CBB HBB2 HEC sing 423 n n CBB HBB3 HEC sing 424 n n NC C1C HEC sing 425 n y NC C4C HEC sing 426 n y C1C C2C HEC doub 427 n y C2C C3C HEC sing 428 n y C2C CMC HEC sing 429 n n C3C C4C HEC sing 430 n y C3C CAC HEC doub 431 e n CMC HMC1 HEC sing 432 n n CMC HMC2 HEC sing 433 n n CMC HMC3 HEC sing 434 n n CAC CBC HEC sing 435 n n CAC HAC HEC sing 436 n n CBC HBC1 HEC sing 437 n n CBC HBC2 HEC sing 438 n n CBC HBC3 HEC sing 439 n n ND C1D HEC sing 440 n y ND C4D HEC sing 441 n y C1D C2D HEC doub 442 n y C2D C3D HEC sing 443 n y C2D CMD HEC sing 444 n n C3D C4D HEC doub 445 n y C3D CAD HEC sing 446 n n CMD HMD1 HEC sing 447 n n CMD HMD2 HEC sing 448 n n CMD HMD3 HEC sing 449 n n CAD CBD HEC sing 450 n n CAD HAD1 HEC sing 451 n n CAD HAD2 HEC sing 452 n n CBD CGD HEC sing 453 n n CBD HBD1 HEC sing 454 n n CBD HBD2 HEC sing 455 n n CGD O1D HEC doub 456 n n CGD O2D HEC sing 457 n n O2D H2D HEC sing 458 n n # _atom_sites.entry_id 1Q90 _atom_sites.fract_transf_matrix[1][1] 0.00976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 HEC A 1 900 900 HEC HEM . K 10 HEC B 1 903 903 HEC HEM . L 10 HEC B 1 901 901 HEC HEM . M 10 HEC B 1 902 902 HEC HEM . N 11 BCR B 1 904 904 BCR BCR . O 12 LFA B 1 960 960 LFA LFA . P 13 FES C 1 210 210 FES FES . Q 14 CLA D 1 910 910 CLA CLA . R 15 TDS D 1 920 920 TDS TDS . S 16 LMG D 1 953 953 LMG LMG . T 17 SQD R 1 950 950 SQD SQD . U 16 LMG L 1 951 951 LMG LMG . V 18 HOH B 1 961 961 HOH HOH . V 18 HOH B 2 963 963 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . K 10 50.907 153.566 151.159 1 53.14 ? FE HEC 903 B 1 HETATM 2 C CHA HEC . . . K 10 49.111 155.962 152.879 1 53.14 ? CHA HEC 903 B 1 HETATM 3 C CHB HEC . . . K 10 49.963 151.203 153.42 1 53.14 ? CHB HEC 903 B 1 HETATM 4 C CHC HEC . . . K 10 52.68 151.197 149.408 1 53.14 ? CHC HEC 903 B 1 HETATM 5 C CHD HEC . . . K 10 51.806 155.925 148.88 1 53.14 ? CHD HEC 903 B 1 HETATM 6 N NA HEC . . . K 10 49.79 153.593 152.808 1 53.14 ? NA HEC 903 B 1 HETATM 7 C C1A HEC . . . K 10 49.128 154.652 153.391 1 53.14 ? C1A HEC 903 B 1 HETATM 8 C C2A HEC . . . K 10 48.448 154.256 154.595 1 53.14 ? C2A HEC 903 B 1 HETATM 9 C C3A HEC . . . K 10 48.665 152.937 154.76 1 53.14 ? C3A HEC 903 B 1 HETATM 10 C C4A HEC . . . K 10 49.509 152.508 153.634 1 53.14 ? C4A HEC 903 B 1 HETATM 11 C CMA HEC . . . K 10 48.178 152.008 155.856 1 53.14 ? CMA HEC 903 B 1 HETATM 12 C CAA HEC . . . K 10 47.62 155.152 155.539 1 53.14 ? CAA HEC 903 B 1 HETATM 13 C CBA HEC . . . K 10 48.649 155.856 156.427 1 53.14 ? CBA HEC 903 B 1 HETATM 14 C CGA HEC . . . K 10 48.198 156.414 157.755 1 53.14 ? CGA HEC 903 B 1 HETATM 15 O O1A HEC . . . K 10 47.514 155.723 158.565 1 53.14 ? O1A HEC 903 B 1 HETATM 16 O O2A HEC . . . K 10 48.58 157.633 157.992 1 53.14 ? O2A HEC 903 B 1 HETATM 17 N NB HEC . . . K 10 51.236 151.615 151.377 1 53.14 ? NB HEC 903 B 1 HETATM 18 C C1B HEC . . . K 10 50.744 150.765 152.404 1 53.14 ? C1B HEC 903 B 1 HETATM 19 C C2B HEC . . . K 10 51.179 149.429 152.213 1 53.14 ? C2B HEC 903 B 1 HETATM 20 C C3B HEC . . . K 10 51.938 149.396 151.103 1 53.14 ? C3B HEC 903 B 1 HETATM 21 C C4B HEC . . . K 10 51.989 150.783 150.56 1 53.14 ? C4B HEC 903 B 1 HETATM 22 C CMB HEC . . . K 10 50.803 148.284 153.156 1 53.14 ? CMB HEC 903 B 1 HETATM 23 C CAB HEC . . . K 10 52.645 148.183 150.455 1 53.14 ? CAB HEC 903 B 1 HETATM 24 C CBB HEC . . . K 10 53.756 147.529 151.372 1 53.14 ? CBB HEC 903 B 1 HETATM 25 N NC HEC . . . K 10 52.05 153.555 149.475 1 53.14 ? NC HEC 903 B 1 HETATM 26 C C1C HEC . . . K 10 52.697 152.514 148.913 1 53.14 ? C1C HEC 903 B 1 HETATM 27 C C2C HEC . . . K 10 53.405 152.922 147.73 1 53.14 ? C2C HEC 903 B 1 HETATM 28 C C3C HEC . . . K 10 53.162 154.242 147.573 1 53.14 ? C3C HEC 903 B 1 HETATM 29 C C4C HEC . . . K 10 52.308 154.64 148.669 1 53.14 ? C4C HEC 903 B 1 HETATM 30 C CMC HEC . . . K 10 54.23 152.007 146.862 1 53.14 ? CMC HEC 903 B 1 HETATM 31 C CAC HEC . . . K 10 53.623 155.234 146.483 1 53.14 ? CAC HEC 903 B 1 HETATM 32 C CBC HEC . . . K 10 55.137 155.483 146.404 1 53.14 ? CBC HEC 903 B 1 HETATM 33 N ND HEC . . . K 10 50.519 155.547 150.931 1 53.14 ? ND HEC 903 B 1 HETATM 34 C C1D HEC . . . K 10 51.003 156.334 149.885 1 53.14 ? C1D HEC 903 B 1 HETATM 35 C C2D HEC . . . K 10 50.451 157.696 150.098 1 53.14 ? C2D HEC 903 B 1 HETATM 36 C C3D HEC . . . K 10 49.699 157.729 151.201 1 53.14 ? C3D HEC 903 B 1 HETATM 37 C C4D HEC . . . K 10 49.757 156.343 151.736 1 53.14 ? C4D HEC 903 B 1 HETATM 38 C CMD HEC . . . K 10 50.774 158.853 149.087 1 53.14 ? CMD HEC 903 B 1 HETATM 39 C CAD HEC . . . K 10 48.959 158.905 151.751 1 53.14 ? CAD HEC 903 B 1 HETATM 40 C CBD HEC . . . K 10 49.914 159.863 152.494 1 53.14 ? CBD HEC 903 B 1 HETATM 41 C CGD HEC . . . K 10 49.996 159.723 153.985 1 53.14 ? CGD HEC 903 B 1 HETATM 42 O O1D HEC . . . K 10 49.129 159.126 154.684 1 53.14 ? O1D HEC 903 B 1 HETATM 43 O O2D HEC . . . K 10 51.035 160.258 154.473 1 53.14 ? O2D HEC 903 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #