data_1Q90 # _model_server_result.job_id nTF5Uz4WE4hUkExtmnc7VA _model_server_result.datetime_utc '2025-03-04 21:29:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":920}' # _entry.id 1Q90 # _exptl.entry_id 1Q90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.566 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q90 _cell.length_a 102.454 _cell.length_b 171.205 _cell.length_c 351.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octadecameric 18 author_and_software_defined_assembly 1 PISA,PQS 36-meric 36 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 102.454 342.41 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.454 0 351.009 4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 342.41 351.009 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 60 C CYS 139 1_555 C SG CYS 75 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 21 A CYS 21 1_555 J CAB HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale2 A SG CYS 24 A CYS 24 1_555 J CAC HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale3 B SG CYS 35 B CYS 35 1_555 K CAB HEC . B HEC 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc1 A N TYR 1 A TYR 1 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 B NE2 HIS 86 B HIS 86 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 B NE2 HIS 187 B HIS 187 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 K FE HEC . B HEC 903 1_555 V O HOH . B HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 C SG CYS 55 C CYS 134 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 C ND1 HIS 57 C HIS 136 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc10 C SG CYS 73 C CYS 152 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc11 C ND1 HIS 76 C HIS 155 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C25 H38 O5' _chem_comp.formula_weight 418.566 _chem_comp.id TDS _chem_comp.mon_nstd_flag . _chem_comp.name 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TRIDECYL-STIGMATELLIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBC CBB TDS sing 954 n n CBC HBC1 TDS sing 955 n n CBC HBC2 TDS sing 956 n n CBC HBC3 TDS sing 957 n n CBB CBA TDS sing 958 n n CBB HBB1 TDS sing 959 n n CBB HBB2 TDS sing 960 n n CBA CAZ TDS sing 961 n n CBA HBA1 TDS sing 962 n n CBA HBA2 TDS sing 963 n n CAZ CAY TDS sing 964 n n CAZ HAZ1 TDS sing 965 n n CAZ HAZ2 TDS sing 966 n n CAY CAX TDS sing 967 n n CAY HAY1 TDS sing 968 n n CAY HAY2 TDS sing 969 n n CAX CAW TDS sing 970 n n CAX HAX1 TDS sing 971 n n CAX HAX2 TDS sing 972 n n CAW CAV TDS sing 973 n n CAW HAW1 TDS sing 974 n n CAW HAW2 TDS sing 975 n n CAV CAU TDS sing 976 n n CAV HAV1 TDS sing 977 n n CAV HAV2 TDS sing 978 n n CAU CAT TDS sing 979 n n CAU HAU1 TDS sing 980 n n CAU HAU2 TDS sing 981 n n CAT CAS TDS sing 982 n n CAT HAT1 TDS sing 983 n n CAT HAT2 TDS sing 984 n n CAS CAR TDS sing 985 n n CAS HAS1 TDS sing 986 n n CAS HAS2 TDS sing 987 n n CAR CAQ TDS sing 988 n n CAR HAR1 TDS sing 989 n n CAR HAR2 TDS sing 990 n n CAQ CAP TDS sing 991 n n CAQ HAQ1 TDS sing 992 n n CAQ HAQ2 TDS sing 993 n n CAP OAO TDS sing 994 n y CAP CAH TDS doub 995 n y OAO CAN TDS sing 996 n y CAH CAI TDS sing 997 n n CAH CAG TDS sing 998 n y CAI HAI1 TDS sing 999 n n CAI HAI2 TDS sing 1000 n n CAI HAI3 TDS sing 1001 n n CAG OAC TDS doub 1002 n n CAG CAF TDS sing 1003 n y CAF CAN TDS doub 1004 n y CAF CAE TDS sing 1005 n y CAN CAM TDS sing 1006 n y CAM OBD TDS sing 1007 n n CAM CAL TDS doub 1008 n y OBD HBD TDS sing 1009 n n CAL OAK TDS sing 1010 n n CAL CAD TDS sing 1011 n y OAK CAJ TDS sing 1012 n n CAJ HAJ1 TDS sing 1013 n n CAJ HAJ2 TDS sing 1014 n n CAJ HAJ3 TDS sing 1015 n n CAD CAE TDS doub 1016 n y CAD HAD TDS sing 1017 n n CAE OAB TDS sing 1018 n n OAB CAA TDS sing 1019 n n CAA HAA1 TDS sing 1020 n n CAA HAA2 TDS sing 1021 n n CAA HAA3 TDS sing 1022 n n # _atom_sites.entry_id 1Q90 _atom_sites.fract_transf_matrix[1][1] 0.00976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 HEC A 1 900 900 HEC HEM . K 10 HEC B 1 903 903 HEC HEM . L 10 HEC B 1 901 901 HEC HEM . M 10 HEC B 1 902 902 HEC HEM . N 11 BCR B 1 904 904 BCR BCR . O 12 LFA B 1 960 960 LFA LFA . P 13 FES C 1 210 210 FES FES . Q 14 CLA D 1 910 910 CLA CLA . R 15 TDS D 1 920 920 TDS TDS . S 16 LMG D 1 953 953 LMG LMG . T 17 SQD R 1 950 950 SQD SQD . U 16 LMG L 1 951 951 LMG LMG . V 18 HOH B 1 961 961 HOH HOH . V 18 HOH B 2 963 963 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBC TDS . . . R 15 33.501 170.63 129.613 1 87.4 ? CBC TDS 920 D 1 HETATM 2 C CBB TDS . . . R 15 32.937 169.302 130.181 1 87.4 ? CBB TDS 920 D 1 HETATM 3 C CBA TDS . . . R 15 31.91 168.322 129.549 1 87.4 ? CBA TDS 920 D 1 HETATM 4 C CAZ TDS . . . R 15 31.405 167.026 130.232 1 87.4 ? CAZ TDS 920 D 1 HETATM 5 C CAY TDS . . . R 15 30.685 165.813 129.594 1 87.4 ? CAY TDS 920 D 1 HETATM 6 C CAX TDS . . . R 15 31.404 164.534 129.157 1 87.4 ? CAX TDS 920 D 1 HETATM 7 C CAW TDS . . . R 15 30.773 163.124 129.025 1 87.4 ? CAW TDS 920 D 1 HETATM 8 C CAV TDS . . . R 15 31.269 161.954 128.144 1 87.4 ? CAV TDS 920 D 1 HETATM 9 C CAU TDS . . . R 15 30.698 160.577 128.555 1 87.4 ? CAU TDS 920 D 1 HETATM 10 C CAT TDS . . . R 15 31.337 159.357 127.84 1 87.4 ? CAT TDS 920 D 1 HETATM 11 C CAS TDS . . . R 15 31.652 158.128 128.675 1 87.4 ? CAS TDS 920 D 1 HETATM 12 C CAR TDS . . . R 15 31.549 156.725 128.074 1 87.4 ? CAR TDS 920 D 1 HETATM 13 C CAQ TDS . . . R 15 32.497 156.363 126.948 1 87.4 ? CAQ TDS 920 D 1 HETATM 14 C CAP TDS . . . R 15 32.211 155.515 125.634 1 89.14 ? CAP TDS 920 D 1 HETATM 15 O OAO TDS . . . R 15 33.414 155.475 124.884 1 89.14 ? OAO TDS 920 D 1 HETATM 16 C CAH TDS . . . R 15 31.041 154.846 125.117 1 89.14 ? CAH TDS 920 D 1 HETATM 17 C CAI TDS . . . R 15 29.678 154.779 125.777 1 89.14 ? CAI TDS 920 D 1 HETATM 18 C CAG TDS . . . R 15 31.152 154.138 123.789 1 89.14 ? CAG TDS 920 D 1 HETATM 19 O OAC TDS . . . R 15 30.134 153.577 123.368 1 89.14 ? OAC TDS 920 D 1 HETATM 20 C CAF TDS . . . R 15 32.458 154.133 123.025 1 89.14 ? CAF TDS 920 D 1 HETATM 21 C CAN TDS . . . R 15 33.581 154.823 123.624 1 89.14 ? CAN TDS 920 D 1 HETATM 22 C CAM TDS . . . R 15 34.873 154.861 122.955 1 89.14 ? CAM TDS 920 D 1 HETATM 23 O OBD TDS . . . R 15 35.939 155.527 123.549 1 89.14 ? OBD TDS 920 D 1 HETATM 24 C CAL TDS . . . R 15 35.068 154.217 121.68 1 89.14 ? CAL TDS 920 D 1 HETATM 25 O OAK TDS . . . R 15 36.391 154.337 121.136 1 89.14 ? OAK TDS 920 D 1 HETATM 26 C CAJ TDS . . . R 15 36.73 153.75 119.881 1 89.14 ? CAJ TDS 920 D 1 HETATM 27 C CAD TDS . . . R 15 33.931 153.52 121.072 1 89.14 ? CAD TDS 920 D 1 HETATM 28 C CAE TDS . . . R 15 32.621 153.461 121.717 1 89.14 ? CAE TDS 920 D 1 HETATM 29 O OAB TDS . . . R 15 31.482 152.789 121.151 1 89.14 ? OAB TDS 920 D 1 HETATM 30 C CAA TDS . . . R 15 31.58 152.128 119.884 1 89.14 ? CAA TDS 920 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 603 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #