data_1Q90 # _model_server_result.job_id 4SwGoa6HXocjeGL-OzJWWw _model_server_result.datetime_utc '2024-11-21 13:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":950}' # _entry.id 1Q90 # _exptl.entry_id 1Q90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 795.116 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q90 _cell.length_a 102.454 _cell.length_b 171.205 _cell.length_c 351.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octadecameric 18 author_and_software_defined_assembly 1 PISA,PQS 36-meric 36 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 102.454 342.41 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.454 0 351.009 4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 342.41 351.009 # _struct_asym.details ? _struct_asym.entity_id 17 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 60 C CYS 139 1_555 C SG CYS 75 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 21 A CYS 21 1_555 J CAB HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale2 A SG CYS 24 A CYS 24 1_555 J CAC HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale3 B SG CYS 35 B CYS 35 1_555 K CAB HEC . B HEC 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc1 A N TYR 1 A TYR 1 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 B NE2 HIS 86 B HIS 86 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 B NE2 HIS 187 B HIS 187 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 K FE HEC . B HEC 903 1_555 V O HOH . B HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 C SG CYS 55 C CYS 134 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 C ND1 HIS 57 C HIS 136 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc10 C SG CYS 73 C CYS 152 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc11 C ND1 HIS 76 C HIS 155 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C44 SQD sing 822 n n O6 C1 SQD sing 823 n n C44 C45 SQD sing 824 n n C44 H441 SQD sing 825 n n C44 H442 SQD sing 826 n n C45 C46 SQD sing 827 n n C45 O47 SQD sing 828 n n C45 H45 SQD sing 829 n n C46 O48 SQD sing 830 n n C46 H461 SQD sing 831 n n C46 H462 SQD sing 832 n n O47 C7 SQD sing 833 n n C7 O49 SQD doub 834 n n C7 C8 SQD sing 835 n n C8 C9 SQD sing 836 n n C8 H81 SQD sing 837 n n C8 H82 SQD sing 838 n n C9 C10 SQD sing 839 n n C9 H91 SQD sing 840 n n C9 H92 SQD sing 841 n n C10 C11 SQD sing 842 n n C10 H101 SQD sing 843 n n C10 H102 SQD sing 844 n n C11 C12 SQD sing 845 n n C11 H111 SQD sing 846 n n C11 H112 SQD sing 847 n n C12 C13 SQD sing 848 n n C12 H121 SQD sing 849 n n C12 H122 SQD sing 850 n n C13 C14 SQD sing 851 n n C13 H131 SQD sing 852 n n C13 H132 SQD sing 853 n n C14 C15 SQD sing 854 n n C14 H141 SQD sing 855 n n C14 H142 SQD sing 856 n n C15 C16 SQD sing 857 n n C15 H151 SQD sing 858 n n C15 H152 SQD sing 859 n n C16 C17 SQD sing 860 n n C16 H161 SQD sing 861 n n C16 H162 SQD sing 862 n n C17 C18 SQD sing 863 n n C17 H171 SQD sing 864 n n C17 H172 SQD sing 865 n n C18 C19 SQD sing 866 n n C18 H181 SQD sing 867 n n C18 H182 SQD sing 868 n n C19 C20 SQD sing 869 n n C19 H191 SQD sing 870 n n C19 H192 SQD sing 871 n n C20 C21 SQD sing 872 n n C20 H201 SQD sing 873 n n C20 H202 SQD sing 874 n n C21 C22 SQD sing 875 n n C21 H211 SQD sing 876 n n C21 H212 SQD sing 877 n n C22 H221 SQD sing 878 n n C22 H222 SQD sing 879 n n C22 H223 SQD sing 880 n n O48 C23 SQD sing 881 n n C23 O10 SQD doub 882 n n C23 C24 SQD sing 883 n n C24 C25 SQD sing 884 n n C24 H241 SQD sing 885 n n C24 H242 SQD sing 886 n n C25 C26 SQD sing 887 n n C25 H251 SQD sing 888 n n C25 H252 SQD sing 889 n n C26 C27 SQD sing 890 n n C26 H261 SQD sing 891 n n C26 H262 SQD sing 892 n n C27 C28 SQD sing 893 n n C27 H271 SQD sing 894 n n C27 H272 SQD sing 895 n n C28 C29 SQD sing 896 n n C28 H281 SQD sing 897 n n C28 H282 SQD sing 898 n n C29 C30 SQD sing 899 n n C29 H291 SQD sing 900 n n C29 H292 SQD sing 901 n n C30 C31 SQD sing 902 n n C30 H301 SQD sing 903 n n C30 H302 SQD sing 904 n n C31 C32 SQD sing 905 n n C31 H311 SQD sing 906 n n C31 H312 SQD sing 907 n n C32 C33 SQD sing 908 n n C32 H321 SQD sing 909 n n C32 H322 SQD sing 910 n n C33 C34 SQD sing 911 n n C33 H331 SQD sing 912 n n C33 H332 SQD sing 913 n n C34 C35 SQD sing 914 n n C34 H341 SQD sing 915 n n C34 H342 SQD sing 916 n n C35 C36 SQD sing 917 n n C35 H351 SQD sing 918 n n C35 H352 SQD sing 919 n n C36 C37 SQD sing 920 n n C36 H361 SQD sing 921 n n C36 H362 SQD sing 922 n n C37 C38 SQD sing 923 n n C37 H371 SQD sing 924 n n C37 H372 SQD sing 925 n n C38 H381 SQD sing 926 n n C38 H382 SQD sing 927 n n C38 H383 SQD sing 928 n n C1 C2 SQD sing 929 n n C1 O5 SQD sing 930 n n C1 H1 SQD sing 931 n n C2 O2 SQD sing 932 n n C2 C3 SQD sing 933 n n C2 H2 SQD sing 934 n n O2 HO2 SQD sing 935 n n C3 O3 SQD sing 936 n n C3 C4 SQD sing 937 n n C3 H3 SQD sing 938 n n O3 HO3 SQD sing 939 n n C4 O4 SQD sing 940 n n C4 C5 SQD sing 941 n n C4 H4 SQD sing 942 n n O4 HO4 SQD sing 943 n n C5 C6 SQD sing 944 n n C5 O5 SQD sing 945 n n C5 H5 SQD sing 946 n n C6 S SQD sing 947 n n C6 H61 SQD sing 948 n n C6 H62 SQD sing 949 n n S O7 SQD doub 950 n n S O8 SQD sing 951 n n S O9 SQD doub 952 n n O8 HO8 SQD sing 953 n n # _atom_sites.entry_id 1Q90 _atom_sites.fract_transf_matrix[1][1] 0.00976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 HEC A 1 900 900 HEC HEM . K 10 HEC B 1 903 903 HEC HEM . L 10 HEC B 1 901 901 HEC HEM . M 10 HEC B 1 902 902 HEC HEM . N 11 BCR B 1 904 904 BCR BCR . O 12 LFA B 1 960 960 LFA LFA . P 13 FES C 1 210 210 FES FES . Q 14 CLA D 1 910 910 CLA CLA . R 15 TDS D 1 920 920 TDS TDS . S 16 LMG D 1 953 953 LMG LMG . T 17 SQD R 1 950 950 SQD SQD . U 16 LMG L 1 951 951 LMG LMG . V 18 HOH B 1 961 961 HOH HOH . V 18 HOH B 2 963 963 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . T 17 69.192 155.77 157.772 1 62.77 ? O6 SQD 950 R 1 HETATM 2 C C44 SQD . . . T 17 70.345 155.316 157.16 1 62.77 ? C44 SQD 950 R 1 HETATM 3 C C45 SQD . . . T 17 70.562 156.216 155.94 1 62.77 ? C45 SQD 950 R 1 HETATM 4 C C46 SQD . . . T 17 71.469 155.544 154.927 1 62.77 ? C46 SQD 950 R 1 HETATM 5 O O47 SQD . . . T 17 69.337 156.494 155.254 1 111.08 ? O47 SQD 950 R 1 HETATM 6 C C7 SQD . . . T 17 68.793 157.812 155.352 1 62.77 ? C7 SQD 950 R 1 HETATM 7 O O49 SQD . . . T 17 69.253 158.647 156.136 1 111.08 ? O49 SQD 950 R 1 HETATM 8 C C8 SQD . . . T 17 67.594 158.158 154.453 1 62.77 ? C8 SQD 950 R 1 HETATM 9 C C9 SQD . . . T 17 67.944 157.979 152.975 1 111.08 ? C9 SQD 950 R 1 HETATM 10 O O48 SQD . . . T 17 70.887 154.356 154.435 1 62.77 ? O48 SQD 950 R 1 HETATM 11 C C23 SQD . . . T 17 70.801 154.266 153.026 1 62.77 ? C23 SQD 950 R 1 HETATM 12 O O10 SQD . . . T 17 71.802 154.503 152.36 1 62.77 ? O10 SQD 950 R 1 HETATM 13 C C24 SQD . . . T 17 69.498 153.871 152.288 1 62.77 ? C24 SQD 950 R 1 HETATM 14 C C25 SQD . . . T 17 69.136 152.97 151.07 1 63.98 ? C25 SQD 950 R 1 HETATM 15 C C26 SQD . . . T 17 67.613 152.939 150.749 1 63.98 ? C26 SQD 950 R 1 HETATM 16 C C27 SQD . . . T 17 67.185 153.495 149.353 1 63.98 ? C27 SQD 950 R 1 HETATM 17 C C28 SQD . . . T 17 66.475 152.434 148.483 1 63.98 ? C28 SQD 950 R 1 HETATM 18 C C29 SQD . . . T 17 65.853 153.063 147.21 1 63.98 ? C29 SQD 950 R 1 HETATM 19 C C30 SQD . . . T 17 65.767 152.107 146.01 1 63.98 ? C30 SQD 950 R 1 HETATM 20 C C1 SQD . . . T 17 68.303 154.843 158.39 1 62.77 ? C1 SQD 950 R 1 HETATM 21 C C2 SQD . . . T 17 66.823 155.3 158.765 1 62.77 ? C2 SQD 950 R 1 HETATM 22 O O2 SQD . . . T 17 66.665 156.62 158.238 1 62.77 ? O2 SQD 950 R 1 HETATM 23 C C3 SQD . . . T 17 66.657 155.359 160.251 1 62.77 ? C3 SQD 950 R 1 HETATM 24 O O3 SQD . . . T 17 65.219 155.689 160.397 1 62.77 ? O3 SQD 950 R 1 HETATM 25 C C4 SQD . . . T 17 66.994 153.823 160.876 1 62.77 ? C4 SQD 950 R 1 HETATM 26 O O4 SQD . . . T 17 66.821 153.792 162.256 1 62.77 ? O4 SQD 950 R 1 HETATM 27 C C5 SQD . . . T 17 68.361 153.447 160.383 1 62.77 ? C5 SQD 950 R 1 HETATM 28 C C6 SQD . . . T 17 68.682 152.16 160.809 1 111.08 ? C6 SQD 950 R 1 HETATM 29 O O5 SQD . . . T 17 68.537 153.513 158.886 1 62.77 ? O5 SQD 950 R 1 HETATM 30 S S SQD . . . T 17 70.206 151.26 160.445 1 62.77 ? S SQD 950 R 1 HETATM 31 O O7 SQD . . . T 17 70.072 149.781 159.947 1 62.77 ? O7 SQD 950 R 1 HETATM 32 O O8 SQD . . . T 17 70.763 151.389 161.889 1 62.77 ? O8 SQD 950 R 1 HETATM 33 O O9 SQD . . . T 17 70.958 152.147 159.61 1 62.77 ? O9 SQD 950 R 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 1246 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 33 #