data_1Q90 # _model_server_result.job_id EpVi777N3Y0Rw-nuXhvOdQ _model_server_result.datetime_utc '2024-10-25 20:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":950}' # _entry.id 1Q90 # _exptl.entry_id 1Q90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 795.116 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q90 _cell.length_a 102.454 _cell.length_b 171.205 _cell.length_c 351.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octadecameric 18 author_and_software_defined_assembly 1 PISA,PQS 36-meric 36 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 102.454 342.41 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.454 0 351.009 4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 342.41 351.009 # _struct_asym.details ? _struct_asym.entity_id 17 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 60 C CYS 139 1_555 C SG CYS 75 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 21 A CYS 21 1_555 J CAB HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale2 A SG CYS 24 A CYS 24 1_555 J CAC HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale3 B SG CYS 35 B CYS 35 1_555 K CAB HEC . B HEC 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc1 A N TYR 1 A TYR 1 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 B NE2 HIS 86 B HIS 86 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 B NE2 HIS 187 B HIS 187 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 K FE HEC . B HEC 903 1_555 V O HOH . B HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 C SG CYS 55 C CYS 134 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 C ND1 HIS 57 C HIS 136 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc10 C SG CYS 73 C CYS 152 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc11 C ND1 HIS 76 C HIS 155 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # _atom_sites.entry_id 1Q90 _atom_sites.fract_transf_matrix[1][1] 0.00976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 HEC A 1 900 900 HEC HEM . K 10 HEC B 1 903 903 HEC HEM . L 10 HEC B 1 901 901 HEC HEM . M 10 HEC B 1 902 902 HEC HEM . N 11 BCR B 1 904 904 BCR BCR . O 12 LFA B 1 960 960 LFA LFA . P 13 FES C 1 210 210 FES FES . Q 14 CLA D 1 910 910 CLA CLA . R 15 TDS D 1 920 920 TDS TDS . S 16 LMG D 1 953 953 LMG LMG . T 17 SQD R 1 950 950 SQD SQD . U 16 LMG L 1 951 951 LMG LMG . V 18 HOH B 1 961 961 HOH HOH . V 18 HOH B 2 963 963 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . T 17 69.192 155.77 157.772 1 62.77 ? O6 SQD 950 R 1 HETATM 2 C C44 SQD . . . T 17 70.345 155.316 157.16 1 62.77 ? C44 SQD 950 R 1 HETATM 3 C C45 SQD . . . T 17 70.562 156.216 155.94 1 62.77 ? C45 SQD 950 R 1 HETATM 4 C C46 SQD . . . T 17 71.469 155.544 154.927 1 62.77 ? C46 SQD 950 R 1 HETATM 5 O O47 SQD . . . T 17 69.337 156.494 155.254 1 111.08 ? O47 SQD 950 R 1 HETATM 6 C C7 SQD . . . T 17 68.793 157.812 155.352 1 62.77 ? C7 SQD 950 R 1 HETATM 7 O O49 SQD . . . T 17 69.253 158.647 156.136 1 111.08 ? O49 SQD 950 R 1 HETATM 8 C C8 SQD . . . T 17 67.594 158.158 154.453 1 62.77 ? C8 SQD 950 R 1 HETATM 9 C C9 SQD . . . T 17 67.944 157.979 152.975 1 111.08 ? C9 SQD 950 R 1 HETATM 10 O O48 SQD . . . T 17 70.887 154.356 154.435 1 62.77 ? O48 SQD 950 R 1 HETATM 11 C C23 SQD . . . T 17 70.801 154.266 153.026 1 62.77 ? C23 SQD 950 R 1 HETATM 12 O O10 SQD . . . T 17 71.802 154.503 152.36 1 62.77 ? O10 SQD 950 R 1 HETATM 13 C C24 SQD . . . T 17 69.498 153.871 152.288 1 62.77 ? C24 SQD 950 R 1 HETATM 14 C C25 SQD . . . T 17 69.136 152.97 151.07 1 63.98 ? C25 SQD 950 R 1 HETATM 15 C C26 SQD . . . T 17 67.613 152.939 150.749 1 63.98 ? C26 SQD 950 R 1 HETATM 16 C C27 SQD . . . T 17 67.185 153.495 149.353 1 63.98 ? C27 SQD 950 R 1 HETATM 17 C C28 SQD . . . T 17 66.475 152.434 148.483 1 63.98 ? C28 SQD 950 R 1 HETATM 18 C C29 SQD . . . T 17 65.853 153.063 147.21 1 63.98 ? C29 SQD 950 R 1 HETATM 19 C C30 SQD . . . T 17 65.767 152.107 146.01 1 63.98 ? C30 SQD 950 R 1 HETATM 20 C C1 SQD . . . T 17 68.303 154.843 158.39 1 62.77 ? C1 SQD 950 R 1 HETATM 21 C C2 SQD . . . T 17 66.823 155.3 158.765 1 62.77 ? C2 SQD 950 R 1 HETATM 22 O O2 SQD . . . T 17 66.665 156.62 158.238 1 62.77 ? O2 SQD 950 R 1 HETATM 23 C C3 SQD . . . T 17 66.657 155.359 160.251 1 62.77 ? C3 SQD 950 R 1 HETATM 24 O O3 SQD . . . T 17 65.219 155.689 160.397 1 62.77 ? O3 SQD 950 R 1 HETATM 25 C C4 SQD . . . T 17 66.994 153.823 160.876 1 62.77 ? C4 SQD 950 R 1 HETATM 26 O O4 SQD . . . T 17 66.821 153.792 162.256 1 62.77 ? O4 SQD 950 R 1 HETATM 27 C C5 SQD . . . T 17 68.361 153.447 160.383 1 62.77 ? C5 SQD 950 R 1 HETATM 28 C C6 SQD . . . T 17 68.682 152.16 160.809 1 111.08 ? C6 SQD 950 R 1 HETATM 29 O O5 SQD . . . T 17 68.537 153.513 158.886 1 62.77 ? O5 SQD 950 R 1 HETATM 30 S S SQD . . . T 17 70.206 151.26 160.445 1 62.77 ? S SQD 950 R 1 HETATM 31 O O7 SQD . . . T 17 70.072 149.781 159.947 1 62.77 ? O7 SQD 950 R 1 HETATM 32 O O8 SQD . . . T 17 70.763 151.389 161.889 1 62.77 ? O8 SQD 950 R 1 HETATM 33 O O9 SQD . . . T 17 70.958 152.147 159.61 1 62.77 ? O9 SQD 950 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 33 #