data_1Q90
#
_model_server_result.job_id            v-KrEy3-vOPXk1RMNHZlqg 
_model_server_result.datetime_utc      '2024-11-21 14:16:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":951}' 
#
_entry.id    1Q90 
#
_exptl.entry_id    1Q90 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.158 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q90 
_cell.length_a            102.454 
_cell.length_b            171.205 
_cell.length_c            351.009 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA octadecameric 18 author_and_software_defined_assembly 1 
PISA,PQS 36-meric 36 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 102.454 342.41 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.454 0 351.009 
4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 342.41 351.009 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 S N N 
? 16 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 60 C CYS 139 1_555 C SG CYS 75 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A SG CYS 21 A CYS 21 1_555 J CAB HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
covale ? covale2 A SG CYS 24 A CYS 24 1_555 J CAC HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale3 B SG CYS 35 B CYS 35 1_555 K CAB HEC . B HEC 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
metalc ? metalc1 A N TYR 1 A TYR 1 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 J FE HEC . A HEC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 B NE2 HIS 86 B HIS 86 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc5 B NE2 HIS 187 B HIS 187 1_555 M FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 L FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc7 K FE HEC . B HEC 903 1_555 V O HOH . B HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc8 C SG CYS 55 C CYS 134 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc9 C ND1 HIS 57 C HIS 136 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc10 C SG CYS 73 C CYS 152 1_555 P FE2 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc11 C ND1 HIS 76 C HIS 155 1_555 P FE1 FES . C FES 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
#
_chem_comp.formula           'C45 H86 O10' 
_chem_comp.formula_weight    787.158 
_chem_comp.id                LMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 LMG sing 585 n n 
C1 C2 LMG sing 586 n n 
C1 O6 LMG sing 587 n n 
C1 HC1 LMG sing 588 n n 
O1 C7 LMG sing 589 n n 
C2 O2 LMG sing 590 n n 
C2 C3 LMG sing 591 n n 
C2 HC2 LMG sing 592 n n 
O2 HO2 LMG sing 593 n n 
C3 O3 LMG sing 594 n n 
C3 C4 LMG sing 595 n n 
C3 HC3 LMG sing 596 n n 
O3 HO3 LMG sing 597 n n 
C4 O4 LMG sing 598 n n 
C4 C5 LMG sing 599 n n 
C4 HC4 LMG sing 600 n n 
O4 HO4 LMG sing 601 n n 
C5 C6 LMG sing 602 n n 
C5 O6 LMG sing 603 n n 
C5 HC5 LMG sing 604 n n 
O5 C6 LMG sing 605 n n 
O5 HO5 LMG sing 606 n n 
C6 HC61 LMG sing 607 n n 
C6 HC62 LMG sing 608 n n 
C7 C8 LMG sing 609 n n 
C7 HC71 LMG sing 610 n n 
C7 HC72 LMG sing 611 n n 
C8 C9 LMG sing 612 n n 
C8 O7 LMG sing 613 n n 
C8 HC8 LMG sing 614 n n 
C9 O8 LMG sing 615 n n 
C9 HC91 LMG sing 616 n n 
C9 HC92 LMG sing 617 n n 
O7 C10 LMG sing 618 n n 
C10 O9 LMG doub 619 n n 
C10 C11 LMG sing 620 n n 
C11 C12 LMG sing 621 n n 
C11 H111 LMG sing 622 n n 
C11 H112 LMG sing 623 n n 
C12 C13 LMG sing 624 n n 
C12 H121 LMG sing 625 n n 
C12 H122 LMG sing 626 n n 
C13 C14 LMG sing 627 n n 
C13 H131 LMG sing 628 n n 
C13 H132 LMG sing 629 n n 
C14 C15 LMG sing 630 n n 
C14 H141 LMG sing 631 n n 
C14 H142 LMG sing 632 n n 
C15 C16 LMG sing 633 n n 
C15 H151 LMG sing 634 n n 
C15 H152 LMG sing 635 n n 
C16 C17 LMG sing 636 n n 
C16 H161 LMG sing 637 n n 
C16 H162 LMG sing 638 n n 
C17 C18 LMG sing 639 n n 
C17 H171 LMG sing 640 n n 
C17 H172 LMG sing 641 n n 
C18 C19 LMG sing 642 n n 
C18 H181 LMG sing 643 n n 
C18 H182 LMG sing 644 n n 
C19 C20 LMG sing 645 n n 
C19 H191 LMG sing 646 n n 
C19 H192 LMG sing 647 n n 
C20 C21 LMG sing 648 n n 
C20 H201 LMG sing 649 n n 
C20 H202 LMG sing 650 n n 
C21 C22 LMG sing 651 n n 
C21 H211 LMG sing 652 n n 
C21 H212 LMG sing 653 n n 
C22 C23 LMG sing 654 n n 
C22 H221 LMG sing 655 n n 
C22 H222 LMG sing 656 n n 
C23 C24 LMG sing 657 n n 
C23 H231 LMG sing 658 n n 
C23 H232 LMG sing 659 n n 
C24 C25 LMG sing 660 n n 
C24 H241 LMG sing 661 n n 
C24 H242 LMG sing 662 n n 
C25 C26 LMG sing 663 n n 
C25 H251 LMG sing 664 n n 
C25 H252 LMG sing 665 n n 
C26 C27 LMG sing 666 n n 
C26 H261 LMG sing 667 n n 
C26 H262 LMG sing 668 n n 
C27 H271 LMG sing 669 n n 
C27 H272 LMG sing 670 n n 
C27 H273 LMG sing 671 n n 
O8 C28 LMG sing 672 n n 
C28 O10 LMG doub 673 n n 
C28 C29 LMG sing 674 n n 
C29 C30 LMG sing 675 n n 
C29 H291 LMG sing 676 n n 
C29 H292 LMG sing 677 n n 
C30 C31 LMG sing 678 n n 
C30 H301 LMG sing 679 n n 
C30 H302 LMG sing 680 n n 
C31 C32 LMG sing 681 n n 
C31 H311 LMG sing 682 n n 
C31 H312 LMG sing 683 n n 
C32 C33 LMG sing 684 n n 
C32 H321 LMG sing 685 n n 
C32 H322 LMG sing 686 n n 
C33 C34 LMG sing 687 n n 
C33 H331 LMG sing 688 n n 
C33 H332 LMG sing 689 n n 
C34 C35 LMG sing 690 n n 
C34 H341 LMG sing 691 n n 
C34 H342 LMG sing 692 n n 
C35 C36 LMG sing 693 n n 
C35 H351 LMG sing 694 n n 
C35 H352 LMG sing 695 n n 
C36 C37 LMG sing 696 n n 
C36 H361 LMG sing 697 n n 
C36 H362 LMG sing 698 n n 
C37 C38 LMG sing 699 n n 
C37 H371 LMG sing 700 n n 
C37 H372 LMG sing 701 n n 
C38 C39 LMG sing 702 n n 
C38 H381 LMG sing 703 n n 
C38 H382 LMG sing 704 n n 
C39 C40 LMG sing 705 n n 
C39 H391 LMG sing 706 n n 
C39 H392 LMG sing 707 n n 
C40 C41 LMG sing 708 n n 
C40 H401 LMG sing 709 n n 
C40 H402 LMG sing 710 n n 
C41 C42 LMG sing 711 n n 
C41 H411 LMG sing 712 n n 
C41 H412 LMG sing 713 n n 
C42 C43 LMG sing 714 n n 
C42 H421 LMG sing 715 n n 
C42 H422 LMG sing 716 n n 
C43 C44 LMG sing 717 n n 
C43 H431 LMG sing 718 n n 
C43 H432 LMG sing 719 n n 
C44 C45 LMG sing 720 n n 
C44 H441 LMG sing 721 n n 
C44 H442 LMG sing 722 n n 
C45 H451 LMG sing 723 n n 
C45 H452 LMG sing 724 n n 
C45 H453 LMG sing 725 n n 
#
_atom_sites.entry_id                     1Q90 
_atom_sites.fract_transf_matrix[1][1]    0.00976 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 10 HEC A 1 900 900 HEC HEM . 
K 10 HEC B 1 903 903 HEC HEM . 
L 10 HEC B 1 901 901 HEC HEM . 
M 10 HEC B 1 902 902 HEC HEM . 
N 11 BCR B 1 904 904 BCR BCR . 
O 12 LFA B 1 960 960 LFA LFA . 
P 13 FES C 1 210 210 FES FES . 
Q 14 CLA D 1 910 910 CLA CLA . 
R 15 TDS D 1 920 920 TDS TDS . 
S 16 LMG D 1 953 953 LMG LMG . 
T 17 SQD R 1 950 950 SQD SQD . 
U 16 LMG L 1 951 951 LMG LMG . 
V 18 HOH B 1 961 961 HOH HOH . 
V 18 HOH B 2 963 963 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LMG . . . U 16 53.531 133.837 126.741 1 85.36 ? C1 LMG 951 L 1 
HETATM 2 O O1 LMG . . . U 16 53.489 133.24 127.99 1 85.36 ? O1 LMG 951 L 1 
HETATM 3 C C2 LMG . . . U 16 53.942 132.801 125.714 1 85.36 ? C2 LMG 951 L 1 
HETATM 4 O O2 LMG . . . U 16 55.218 132.278 126.05 1 85.36 ? O2 LMG 951 L 1 
HETATM 5 C C3 LMG . . . U 16 53.952 133.498 124.324 1 85.36 ? C3 LMG 951 L 1 
HETATM 6 O O3 LMG . . . U 16 54.339 132.557 123.343 1 85.36 ? O3 LMG 951 L 1 
HETATM 7 C C4 LMG . . . U 16 52.502 134.058 124.024 1 85.36 ? C4 LMG 951 L 1 
HETATM 8 O O4 LMG . . . U 16 51.563 132.98 124.031 1 85.36 ? O4 LMG 951 L 1 
HETATM 9 C C5 LMG . . . U 16 52.139 135.095 125.143 1 85.36 ? C5 LMG 951 L 1 
HETATM 10 O O5 LMG . . . U 16 50.716 137.107 125.126 1 85.36 ? O5 LMG 951 L 1 
HETATM 11 C C6 LMG . . . U 16 50.733 135.684 124.927 1 85.36 ? C6 LMG 951 L 1 
HETATM 12 O O6 LMG . . . U 16 52.205 134.425 126.435 1 85.36 ? O6 LMG 951 L 1 
HETATM 13 C C7 LMG . . . U 16 52.854 133.937 128.97 1 85.36 ? C7 LMG 951 L 1 
HETATM 14 C C8 LMG . . . U 16 52.05 133.064 129.902 1 85.36 ? C8 LMG 951 L 1 
HETATM 15 C C9 LMG . . . U 16 53.011 132.133 130.693 1 85.36 ? C9 LMG 951 L 1 
HETATM 16 O O7 LMG . . . U 16 51.471 133.947 130.775 1 85.36 ? O7 LMG 951 L 1 
HETATM 17 C C10 LMG . . . U 16 50.139 134.355 130.593 1 85.36 ? C10 LMG 951 L 1 
HETATM 18 O O9 LMG . . . U 16 49.385 133.954 129.666 1 78.82 ? O9 LMG 951 L 1 
HETATM 19 C C11 LMG . . . U 16 49.724 135.38 131.598 1 85.36 ? C11 LMG 951 L 1 
HETATM 20 C C12 LMG . . . U 16 50.778 136.453 131.327 1 85.36 ? C12 LMG 951 L 1 
HETATM 21 C C13 LMG . . . U 16 50.726 137.671 132.14 1 85.36 ? C13 LMG 951 L 1 
HETATM 22 C C14 LMG . . . U 16 51.886 138.493 131.642 1 85.36 ? C14 LMG 951 L 1 
HETATM 23 C C15 LMG . . . U 16 51.913 139.752 132.431 1 78.82 ? C15 LMG 951 L 1 
HETATM 24 C C16 LMG . . . U 16 52.47 139.474 133.804 1 78.82 ? C16 LMG 951 L 1 
HETATM 25 C C17 LMG . . . U 16 52.613 140.811 134.437 1 78.82 ? C17 LMG 951 L 1 
HETATM 26 C C18 LMG . . . U 16 51.329 141.254 135.071 1 78.82 ? C18 LMG 951 L 1 
HETATM 27 C C19 LMG . . . U 16 51.672 142.452 135.845 1 78.82 ? C19 LMG 951 L 1 
HETATM 28 C C20 LMG . . . U 16 50.464 142.976 136.509 1 78.82 ? C20 LMG 951 L 1 
HETATM 29 C C21 LMG . . . U 16 50.978 144.168 137.24 1 78.82 ? C21 LMG 951 L 1 
HETATM 30 C C22 LMG . . . U 16 49.85 144.818 137.966 1 78.82 ? C22 LMG 951 L 1 
HETATM 31 C C23 LMG . . . U 16 50.381 146.04 138.712 1 78.82 ? C23 LMG 951 L 1 
HETATM 32 C C24 LMG . . . U 16 50.628 147.204 137.74 1 78.82 ? C24 LMG 951 L 1 
HETATM 33 C C25 LMG . . . U 16 51.154 148.389 138.525 1 78.82 ? C25 LMG 951 L 1 
HETATM 34 O O8 LMG . . . U 16 52.476 131.784 131.961 1 85.36 ? O8 LMG 951 L 1 
HETATM 35 C C28 LMG . . . U 16 53.201 130.949 132.846 1 85.36 ? C28 LMG 951 L 1 
HETATM 36 O O10 LMG . . . U 16 54.312 130.509 132.536 1 85.36 ? O10 LMG 951 L 1 
HETATM 37 C C29 LMG . . . U 16 52.621 130.572 134.212 1 85.36 ? C29 LMG 951 L 1 
HETATM 38 C C30 LMG . . . U 16 53.036 129.736 135.423 1 85.36 ? C30 LMG 951 L 1 
HETATM 39 C C31 LMG . . . U 16 51.857 129.565 136.393 1 78.82 ? C31 LMG 951 L 1 
HETATM 40 C C32 LMG . . . U 16 51.965 128.213 137.092 1 78.82 ? C32 LMG 951 L 1 
HETATM 41 C C33 LMG . . . U 16 51.023 128.173 138.3 1 78.82 ? C33 LMG 951 L 1 
HETATM 42 C C34 LMG . . . U 16 49.662 127.589 137.927 1 78.82 ? C34 LMG 951 L 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#