data_1Q97 # _model_server_result.job_id h33MCcCwOHzFVJjZh3PdHA _model_server_result.datetime_utc '2025-03-05 20:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":485}' # _entry.id 1Q97 # _exptl.entry_id 1Q97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q97 _cell.length_a 71.823 _cell.length_b 88.692 _cell.length_c 133.495 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 162 A ASN 299 1_555 C MG MG . A MG 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc2 F O1G ATP . A ATP 485 1_555 C MG MG . A MG 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc3 F O3A ATP . A ATP 485 1_555 C MG MG . A MG 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc4 F O2G ATP . A ATP 485 1_555 C MG MG . A MG 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 F O1A ATP . A ATP 485 1_555 C MG MG . A MG 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc6 F O2G ATP . A ATP 485 1_555 D MG MG . A MG 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc7 F O3B ATP . A ATP 485 1_555 D MG MG . A MG 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 F O1B ATP . A ATP 485 1_555 D MG MG . A MG 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc9 A OD2 ASP 181 A ASP 550 1_555 C MG MG . A MG 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc10 A OD1 ASP 181 A ASP 550 1_555 D MG MG . A MG 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc11 A OD2 ASP 181 A ASP 550 1_555 D MG MG . A MG 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc12 B NE2 HIS 8 B HIS 145 1_555 G NI NI . B NI 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc13 B OE2 GLU 14 B GLU 151 1_555 G NI NI . B NI 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 104 n n PG O2G ATP sing 105 n n PG O3G ATP sing 106 n n PG O3B ATP sing 107 n n O2G HOG2 ATP sing 108 n n O3G HOG3 ATP sing 109 n n PB O1B ATP doub 110 n n PB O2B ATP sing 111 n n PB O3B ATP sing 112 n n PB O3A ATP sing 113 n n O2B HOB2 ATP sing 114 n n PA O1A ATP doub 115 n n PA O2A ATP sing 116 n n PA O3A ATP sing 117 n n PA O5' ATP sing 118 n n O2A HOA2 ATP sing 119 n n O5' C5' ATP sing 120 n n C5' C4' ATP sing 121 n n C5' "H5'1" ATP sing 122 n n C5' "H5'2" ATP sing 123 n n C4' O4' ATP sing 124 n n C4' C3' ATP sing 125 n n C4' H4' ATP sing 126 n n O4' C1' ATP sing 127 n n C3' O3' ATP sing 128 n n C3' C2' ATP sing 129 n n C3' H3' ATP sing 130 n n O3' HO3' ATP sing 131 n n C2' O2' ATP sing 132 n n C2' C1' ATP sing 133 n n C2' H2' ATP sing 134 n n O2' HO2' ATP sing 135 n n C1' N9 ATP sing 136 n n C1' H1' ATP sing 137 n n N9 C8 ATP sing 138 n y N9 C4 ATP sing 139 n y C8 N7 ATP doub 140 n y C8 H8 ATP sing 141 n n N7 C5 ATP sing 142 n y C5 C6 ATP sing 143 n y C5 C4 ATP doub 144 n y C6 N6 ATP sing 145 n n C6 N1 ATP doub 146 n y N6 HN61 ATP sing 147 n n N6 HN62 ATP sing 148 n n N1 C2 ATP sing 149 n y C2 N3 ATP doub 150 n y C2 H2 ATP sing 151 n n N3 C4 ATP sing 152 n y # _atom_sites.entry_id 1Q97 _atom_sites.fract_transf_matrix[1][1] 0.013923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 743 262 MG MG . D 2 MG A 1 744 263 MG MG . E 3 SO4 A 1 745 600 SO4 SO4 . F 4 ATP A 1 485 485 ATP ATP . G 5 NI B 1 743 270 NI NI . H 3 SO4 B 1 744 601 SO4 SO4 . I 6 ADN B 1 486 486 ADN ADN . J 7 HOH A 1 746 3 HOH HOH . J 7 HOH A 2 747 8 HOH HOH . J 7 HOH A 3 748 10 HOH HOH . J 7 HOH A 4 749 12 HOH HOH . J 7 HOH A 5 750 17 HOH HOH . J 7 HOH A 6 751 18 HOH HOH . J 7 HOH A 7 752 20 HOH HOH . J 7 HOH A 8 753 23 HOH HOH . J 7 HOH A 9 754 24 HOH HOH . J 7 HOH A 10 755 26 HOH HOH . J 7 HOH A 11 756 31 HOH HOH . J 7 HOH A 12 757 32 HOH HOH . J 7 HOH A 13 758 37 HOH HOH . J 7 HOH A 14 759 39 HOH HOH . J 7 HOH A 15 760 41 HOH HOH . J 7 HOH A 16 761 44 HOH HOH . J 7 HOH A 17 762 56 HOH HOH . J 7 HOH A 18 763 58 HOH HOH . J 7 HOH A 19 764 59 HOH HOH . J 7 HOH A 20 765 61 HOH HOH . J 7 HOH A 21 766 62 HOH HOH . J 7 HOH A 22 767 69 HOH HOH . J 7 HOH A 23 768 72 HOH HOH . J 7 HOH A 24 769 75 HOH HOH . J 7 HOH A 25 770 77 HOH HOH . J 7 HOH A 26 771 78 HOH HOH . J 7 HOH A 27 772 79 HOH HOH . J 7 HOH A 28 773 80 HOH HOH . J 7 HOH A 29 774 82 HOH HOH . J 7 HOH A 30 775 83 HOH HOH . J 7 HOH A 31 776 86 HOH HOH . J 7 HOH A 32 777 87 HOH HOH . J 7 HOH A 33 778 88 HOH HOH . J 7 HOH A 34 779 90 HOH HOH . J 7 HOH A 35 780 91 HOH HOH . J 7 HOH A 36 781 93 HOH HOH . J 7 HOH A 37 782 94 HOH HOH . J 7 HOH A 38 783 96 HOH HOH . J 7 HOH A 39 784 98 HOH HOH . J 7 HOH A 40 785 101 HOH HOH . J 7 HOH A 41 786 103 HOH HOH . J 7 HOH A 42 787 105 HOH HOH . J 7 HOH A 43 788 106 HOH HOH . J 7 HOH A 44 789 109 HOH HOH . J 7 HOH A 45 790 110 HOH HOH . J 7 HOH A 46 791 112 HOH HOH . J 7 HOH A 47 792 113 HOH HOH . J 7 HOH A 48 793 114 HOH HOH . J 7 HOH A 49 794 115 HOH HOH . J 7 HOH A 50 795 116 HOH HOH . J 7 HOH A 51 796 119 HOH HOH . J 7 HOH A 52 797 125 HOH HOH . J 7 HOH A 53 798 126 HOH HOH . J 7 HOH A 54 799 127 HOH HOH . J 7 HOH A 55 800 128 HOH HOH . J 7 HOH A 56 801 131 HOH HOH . J 7 HOH A 57 802 133 HOH HOH . J 7 HOH A 58 803 135 HOH HOH . J 7 HOH A 59 804 139 HOH HOH . J 7 HOH A 60 805 140 HOH HOH . J 7 HOH A 61 806 141 HOH HOH . J 7 HOH A 62 807 142 HOH HOH . J 7 HOH A 63 808 144 HOH HOH . K 7 HOH B 1 745 2 HOH HOH . K 7 HOH B 2 746 4 HOH HOH . K 7 HOH B 3 747 5 HOH HOH . K 7 HOH B 4 748 6 HOH HOH . K 7 HOH B 5 749 7 HOH HOH . K 7 HOH B 6 750 9 HOH HOH . K 7 HOH B 7 751 11 HOH HOH . K 7 HOH B 8 752 13 HOH HOH . K 7 HOH B 9 753 14 HOH HOH . K 7 HOH B 10 754 15 HOH HOH . K 7 HOH B 11 755 16 HOH HOH . K 7 HOH B 12 756 19 HOH HOH . K 7 HOH B 13 757 21 HOH HOH . K 7 HOH B 14 758 22 HOH HOH . K 7 HOH B 15 759 25 HOH HOH . K 7 HOH B 16 760 27 HOH HOH . K 7 HOH B 17 761 28 HOH HOH . K 7 HOH B 18 762 29 HOH HOH . K 7 HOH B 19 763 30 HOH HOH . K 7 HOH B 20 764 33 HOH HOH . K 7 HOH B 21 765 34 HOH HOH . K 7 HOH B 22 766 35 HOH HOH . K 7 HOH B 23 767 36 HOH HOH . K 7 HOH B 24 768 38 HOH HOH . K 7 HOH B 25 769 40 HOH HOH . K 7 HOH B 26 770 42 HOH HOH . K 7 HOH B 27 771 43 HOH HOH . K 7 HOH B 28 772 45 HOH HOH . K 7 HOH B 29 773 46 HOH HOH . K 7 HOH B 30 774 47 HOH HOH . K 7 HOH B 31 775 48 HOH HOH . K 7 HOH B 32 776 49 HOH HOH . K 7 HOH B 33 777 50 HOH HOH . K 7 HOH B 34 778 51 HOH HOH . K 7 HOH B 35 779 52 HOH HOH . K 7 HOH B 36 780 53 HOH HOH . K 7 HOH B 37 781 54 HOH HOH . K 7 HOH B 38 782 55 HOH HOH . K 7 HOH B 39 783 57 HOH HOH . K 7 HOH B 40 784 60 HOH HOH . K 7 HOH B 41 785 63 HOH HOH . K 7 HOH B 42 786 64 HOH HOH . K 7 HOH B 43 787 65 HOH HOH . K 7 HOH B 44 788 66 HOH HOH . K 7 HOH B 45 789 67 HOH HOH . K 7 HOH B 46 790 68 HOH HOH . K 7 HOH B 47 791 70 HOH HOH . K 7 HOH B 48 792 71 HOH HOH . K 7 HOH B 49 793 73 HOH HOH . K 7 HOH B 50 794 74 HOH HOH . K 7 HOH B 51 795 76 HOH HOH . K 7 HOH B 52 796 81 HOH HOH . K 7 HOH B 53 797 84 HOH HOH . K 7 HOH B 54 798 85 HOH HOH . K 7 HOH B 55 799 89 HOH HOH . K 7 HOH B 56 800 92 HOH HOH . K 7 HOH B 57 801 95 HOH HOH . K 7 HOH B 58 802 97 HOH HOH . K 7 HOH B 59 803 99 HOH HOH . K 7 HOH B 60 804 100 HOH HOH . K 7 HOH B 61 805 102 HOH HOH . K 7 HOH B 62 806 104 HOH HOH . K 7 HOH B 63 807 107 HOH HOH . K 7 HOH B 64 808 108 HOH HOH . K 7 HOH B 65 809 111 HOH HOH . K 7 HOH B 66 810 117 HOH HOH . K 7 HOH B 67 811 118 HOH HOH . K 7 HOH B 68 812 120 HOH HOH . K 7 HOH B 69 813 121 HOH HOH . K 7 HOH B 70 814 122 HOH HOH . K 7 HOH B 71 815 123 HOH HOH . K 7 HOH B 72 816 124 HOH HOH . K 7 HOH B 73 817 129 HOH HOH . K 7 HOH B 74 818 130 HOH HOH . K 7 HOH B 75 819 132 HOH HOH . K 7 HOH B 76 820 134 HOH HOH . K 7 HOH B 77 821 136 HOH HOH . K 7 HOH B 78 822 137 HOH HOH . K 7 HOH B 79 823 138 HOH HOH . K 7 HOH B 80 824 143 HOH HOH . K 7 HOH B 81 825 145 HOH HOH . K 7 HOH B 82 826 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 4 33.43 35.039 57.096 1 67.68 ? PG ATP 485 A 1 HETATM 2 O O1G ATP . . . F 4 32.633 34.531 55.941 1 66.83 ? O1G ATP 485 A 1 HETATM 3 O O2G ATP . . . F 4 34.556 34.21 57.605 1 66.87 ? O2G ATP 485 A 1 HETATM 4 O O3G ATP . . . F 4 32.412 35.284 58.334 1 67.01 ? O3G ATP 485 A 1 HETATM 5 P PB ATP . . . F 4 33.518 37.365 55.487 1 61.41 ? PB ATP 485 A 1 HETATM 6 O O1B ATP . . . F 4 34.549 38.386 55.19 1 62.99 ? O1B ATP 485 A 1 HETATM 7 O O2B ATP . . . F 4 32.13 37.819 55.742 1 61.06 ? O2B ATP 485 A 1 HETATM 8 O O3B ATP . . . F 4 34.001 36.53 56.78 1 65.02 ? O3B ATP 485 A 1 HETATM 9 P PA ATP . . . F 4 34.503 36.332 53.015 1 56.59 ? PA ATP 485 A 1 HETATM 10 O O1A ATP . . . F 4 35.435 35.18 53.024 1 57.42 ? O1A ATP 485 A 1 HETATM 11 O O2A ATP . . . F 4 35.078 37.698 52.948 1 56.62 ? O2A ATP 485 A 1 HETATM 12 O O3A ATP . . . F 4 33.528 36.239 54.319 1 59.98 ? O3A ATP 485 A 1 HETATM 13 O O5' ATP . . . F 4 33.46 36.158 51.805 1 54.72 ? O5' ATP 485 A 1 HETATM 14 C C5' ATP . . . F 4 32.335 35.307 51.967 1 50.09 ? C5' ATP 485 A 1 HETATM 15 C C4' ATP . . . F 4 32.06 34.563 50.683 1 48.64 ? C4' ATP 485 A 1 HETATM 16 O O4' ATP . . . F 4 31.802 35.442 49.542 1 47.09 ? O4' ATP 485 A 1 HETATM 17 C C3' ATP . . . F 4 33.214 33.69 50.226 1 47.3 ? C3' ATP 485 A 1 HETATM 18 O O3' ATP . . . F 4 33.235 32.469 50.959 1 48.65 ? O3' ATP 485 A 1 HETATM 19 C C2' ATP . . . F 4 32.842 33.422 48.806 1 47.69 ? C2' ATP 485 A 1 HETATM 20 O O2' ATP . . . F 4 31.776 32.464 48.755 1 47.63 ? O2' ATP 485 A 1 HETATM 21 C C1' ATP . . . F 4 32.334 34.786 48.326 1 45.27 ? C1' ATP 485 A 1 HETATM 22 N N9 ATP . . . F 4 33.504 35.558 47.81 1 41.43 ? N9 ATP 485 A 1 HETATM 23 C C8 ATP . . . F 4 34.337 36.343 48.52 1 37.91 ? C8 ATP 485 A 1 HETATM 24 N N7 ATP . . . F 4 35.253 36.869 47.693 1 35.24 ? N7 ATP 485 A 1 HETATM 25 C C5 ATP . . . F 4 35.003 36.418 46.467 1 34.84 ? C5 ATP 485 A 1 HETATM 26 C C6 ATP . . . F 4 35.595 36.616 45.22 1 34.34 ? C6 ATP 485 A 1 HETATM 27 N N6 ATP . . . F 4 36.635 37.43 45.095 1 32.74 ? N6 ATP 485 A 1 HETATM 28 N N1 ATP . . . F 4 35.08 35.99 44.128 1 37.1 ? N1 ATP 485 A 1 HETATM 29 C C2 ATP . . . F 4 34.011 35.189 44.228 1 37.01 ? C2 ATP 485 A 1 HETATM 30 N N3 ATP . . . F 4 33.424 34.987 45.415 1 37.14 ? N3 ATP 485 A 1 HETATM 31 C C4 ATP . . . F 4 33.898 35.586 46.538 1 37.9 ? C4 ATP 485 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #