data_1Q9B
#
_model_server_result.job_id            qnTo2q-q4gMVIHdLfOLTMQ 
_model_server_result.datetime_utc      '2024-12-25 17:56:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1q9b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":102}' 
#
_entry.id    1Q9B 
#
_exptl.entry_id    1Q9B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Q9B 
_cell.length_a            31.81 
_cell.length_b            60.95 
_cell.length_c            22.51 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Q9B 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 18 A CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 24 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 17 A CYS 17 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 A SG CYS 37 A CYS 37 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 197 n n 
C1 H11 MPD sing 198 n n 
C1 H12 MPD sing 199 n n 
C1 H13 MPD sing 200 n n 
C2 O2 MPD sing 201 n n 
C2 CM MPD sing 202 n n 
C2 C3 MPD sing 203 n n 
O2 HO2 MPD sing 204 n n 
CM HM1 MPD sing 205 n n 
CM HM2 MPD sing 206 n n 
CM HM3 MPD sing 207 n n 
C3 C4 MPD sing 208 n n 
C3 H31 MPD sing 209 n n 
C3 H32 MPD sing 210 n n 
C4 O4 MPD sing 211 n n 
C4 C5 MPD sing 212 n n 
C4 H4 MPD sing 213 n n 
O4 HO4 MPD sing 214 n n 
C5 H51 MPD sing 215 n n 
C5 H52 MPD sing 216 n n 
C5 H53 MPD sing 217 n n 
#
_atom_sites.entry_id                     1Q9B 
_atom_sites.fract_transf_matrix[1][1]    0.031437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016407 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.044425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 101 101 MPD MPD . 
C 2 MPD A 1 102 102 MPD MPD . 
D 3 HOH A 1 201 201 HOH HOH . 
D 3 HOH A 2 202 202 HOH HOH . 
D 3 HOH A 3 203 203 HOH HOH . 
D 3 HOH A 4 204 204 HOH HOH . 
D 3 HOH A 5 205 205 HOH HOH . 
D 3 HOH A 6 206 206 HOH HOH . 
D 3 HOH A 7 207 207 HOH HOH . 
D 3 HOH A 8 208 208 HOH HOH . 
D 3 HOH A 9 209 209 HOH HOH . 
D 3 HOH A 10 210 210 HOH HOH . 
D 3 HOH A 11 211 211 HOH HOH . 
D 3 HOH A 12 212 212 HOH HOH . 
D 3 HOH A 13 213 213 HOH HOH . 
D 3 HOH A 14 214 214 HOH HOH . 
D 3 HOH A 15 215 215 HOH HOH . 
D 3 HOH A 16 216 216 HOH HOH . 
D 3 HOH A 17 217 217 HOH HOH . 
D 3 HOH A 18 218 218 HOH HOH . 
D 3 HOH A 19 219 219 HOH HOH . 
D 3 HOH A 20 220 220 HOH HOH . 
D 3 HOH A 21 221 221 HOH HOH . 
D 3 HOH A 22 222 222 HOH HOH . 
D 3 HOH A 23 223 223 HOH HOH . 
D 3 HOH A 24 224 224 HOH HOH . 
D 3 HOH A 25 225 225 HOH HOH . 
D 3 HOH A 26 226 226 HOH HOH . 
D 3 HOH A 27 227 227 HOH HOH . 
D 3 HOH A 28 228 228 HOH HOH . 
D 3 HOH A 29 229 229 HOH HOH . 
D 3 HOH A 30 230 230 HOH HOH . 
D 3 HOH A 31 231 231 HOH HOH . 
D 3 HOH A 32 232 232 HOH HOH . 
D 3 HOH A 33 233 233 HOH HOH . 
D 3 HOH A 34 234 234 HOH HOH . 
D 3 HOH A 35 235 235 HOH HOH . 
D 3 HOH A 36 236 236 HOH HOH . 
D 3 HOH A 37 237 237 HOH HOH . 
D 3 HOH A 38 238 238 HOH HOH . 
D 3 HOH A 39 239 239 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . A . C 2 17.964 12.726 17.425 0.53 39.29 ? C1 MPD 102 A 1 
HETATM 2 C C1 MPD . B . C 2 18.23 10.907 15.582 0.47 40.77 ? C1 MPD 102 A 1 
HETATM 3 C C2 MPD . A . C 2 17.244 13.563 16.385 0.53 40.4 ? C2 MPD 102 A 1 
HETATM 4 C C2 MPD . B . C 2 18.109 12.299 14.987 0.47 39.5 ? C2 MPD 102 A 1 
HETATM 5 O O2 MPD . A . C 2 16.76 14.699 17.113 0.53 41.79 ? O2 MPD 102 A 1 
HETATM 6 O O2 MPD . B . C 2 18.547 12.094 13.623 0.47 40.18 ? O2 MPD 102 A 1 
HETATM 7 C CM MPD . A . C 2 18.248 13.858 15.331 0.53 39.95 ? CM MPD 102 A 1 
HETATM 8 C CM MPD . B . C 2 16.655 12.641 15.08 0.47 40.1 ? CM MPD 102 A 1 
HETATM 9 C C3 MPD . A . C 2 15.972 12.941 15.797 0.53 40.98 ? C3 MPD 102 A 1 
HETATM 10 C C3 MPD . B . C 2 18.975 13.447 15.461 0.47 39.3 ? C3 MPD 102 A 1 
HETATM 11 C C4 MPD . A . C 2 16.098 11.621 15.065 0.53 39.91 ? C4 MPD 102 A 1 
HETATM 12 C C4 MPD . B . C 2 18.923 14.129 16.795 0.47 39.76 ? C4 MPD 102 A 1 
HETATM 13 O O4 MPD . A . C 2 17.164 11.571 14.146 0.53 37.81 ? O4 MPD 102 A 1 
HETATM 14 O O4 MPD . B . C 2 18.4 15.431 16.801 0.47 39.45 ? O4 MPD 102 A 1 
HETATM 15 C C5 MPD . A . C 2 16.164 10.401 15.957 0.53 40.64 ? C5 MPD 102 A 1 
HETATM 16 C C5 MPD . B . C 2 18.189 13.381 17.891 0.47 40.07 ? C5 MPD 102 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           16 
#