data_1Q9Y # _model_server_result.job_id D80qQOeAkGr4CkpKA-4FFA _model_server_result.datetime_utc '2024-11-28 15:18:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1q9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":939}' # _entry.id 1Q9Y # _exptl.entry_id 1Q9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Q9Y _cell.length_a 80.822 _cell.length_b 118.565 _cell.length_c 127.224 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 2 T DC 908 1_555 A P 8OG 3 T 8OG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale2 A O3' 8OG 3 T 8OG 909 1_555 A P DG 4 T DG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale3 B O3' DC 13 P DC 937 1_555 B P DOC 14 P DOC 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? metalc ? metalc1 D O2A DCP . P DCP 939 1_555 E CA CA . A CA 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc2 D O2B DCP . P DCP 939 1_555 E CA CA . A CA 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc3 D O1G DCP . P DCP 939 1_555 E CA CA . A CA 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 D O2A DCP . P DCP 939 1_555 G CA CA . A CA 941 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc5 C OD2 ASP 414 A ASP 414 1_555 E CA CA . A CA 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc6 C OD1 ASP 414 A ASP 414 1_555 F CA CA . A CA 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc7 C OD2 ASP 414 A ASP 414 1_555 G CA CA . A CA 941 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.227 ? metalc ? metalc8 C O LEU 415 A LEU 415 1_555 E CA CA . A CA 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc9 C OD1 ASP 626 A ASP 626 1_555 E CA CA . A CA 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc10 C OD1 ASP 626 A ASP 626 1_555 G CA CA . A CA 941 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc11 C OD2 ASP 626 A ASP 626 1_555 G CA CA . A CA 941 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc12 C OE1 GLU 689 A GLU 689 1_555 F CA CA . A CA 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? hydrog WATSON-CRICK hydrog1 A N1 DG 4 T DG 910 1_555 B N3 DOC 14 P DOC 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 4 T DG 910 1_555 B O2 DOC 14 P DOC 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 4 T DG 910 1_555 B N4 DOC 14 P DOC 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 5 T DG 911 1_555 B N3 DC 13 P DC 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 5 T DG 911 1_555 B O2 DC 13 P DC 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 5 T DG 911 1_555 B N4 DC 13 P DC 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 6 T DT 912 1_555 B N1 DA 12 P DA 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 6 T DT 912 1_555 B N6 DA 12 P DA 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 7 T DA 913 1_555 B N3 DT 11 P DT 935 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 7 T DA 913 1_555 B O4 DT 11 P DT 935 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 8 T DA 914 1_555 B N3 DT 10 P DT 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 8 T DA 914 1_555 B O4 DT 10 P DT 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 9 T DG 915 1_555 B N3 DC 9 P DC 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 9 T DG 915 1_555 B O2 DC 9 P DC 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 9 T DG 915 1_555 B N4 DC 9 P DC 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 10 T DC 916 1_555 B N1 DG 8 P DG 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 10 T DC 916 1_555 B O6 DG 8 P DG 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 10 T DC 916 1_555 B N2 DG 8 P DG 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 11 T DA 917 1_555 B N3 DT 7 P DT 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 11 T DA 917 1_555 B O4 DT 7 P DT 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 12 T DG 918 1_555 B N3 DC 6 P DC 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 12 T DG 918 1_555 B O2 DC 6 P DC 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 12 T DG 918 1_555 B N4 DC 6 P DC 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 13 T DT 919 1_555 B N1 DA 5 P DA 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 13 T DT 919 1_555 B N6 DA 5 P DA 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 14 T DC 920 1_555 B N1 DG 4 P DG 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 14 T DC 920 1_555 B O6 DG 4 P DG 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 14 T DC 920 1_555 B N2 DG 4 P DG 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 DC 15 T DC 921 1_555 B N1 DG 3 P DG 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N4 DC 15 T DC 921 1_555 B O6 DG 3 P DG 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O2 DC 15 T DC 921 1_555 B N2 DG 3 P DG 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N1 DG 16 T DG 922 1_555 B N3 DC 2 P DC 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N2 DG 16 T DG 922 1_555 B O2 DC 2 P DC 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O6 DG 16 T DG 922 1_555 B N4 DC 2 P DC 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N3 DC 17 T DC 923 1_555 B N1 DG 1 P DG 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N4 DC 17 T DC 923 1_555 B O6 DG 1 P DG 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O2 DC 17 T DC 923 1_555 B N2 DG 1 P DG 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Q9Y _atom_sites.fract_transf_matrix[1][1] 0.012373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DCP P 1 939 939 DCP DCP . E 5 CA A 1 939 939 CA CA . F 5 CA A 1 940 940 CA CA . G 5 CA A 1 941 941 CA CA . H 6 HOH T 1 4 4 HOH HOH . H 6 HOH T 2 17 17 HOH HOH . H 6 HOH T 3 40 40 HOH HOH . H 6 HOH T 4 66 66 HOH HOH . H 6 HOH T 5 77 77 HOH HOH . I 6 HOH P 1 46 46 HOH HOH . I 6 HOH P 2 64 64 HOH HOH . J 6 HOH A 1 942 1 HOH HOH . J 6 HOH A 2 943 2 HOH HOH . J 6 HOH A 3 944 3 HOH HOH . J 6 HOH A 4 945 5 HOH HOH . J 6 HOH A 5 946 6 HOH HOH . J 6 HOH A 6 947 7 HOH HOH . J 6 HOH A 7 948 8 HOH HOH . J 6 HOH A 8 949 9 HOH HOH . J 6 HOH A 9 950 10 HOH HOH . J 6 HOH A 10 951 11 HOH HOH . J 6 HOH A 11 952 12 HOH HOH . J 6 HOH A 12 953 13 HOH HOH . J 6 HOH A 13 954 14 HOH HOH . J 6 HOH A 14 955 15 HOH HOH . J 6 HOH A 15 956 16 HOH HOH . J 6 HOH A 16 957 18 HOH HOH . J 6 HOH A 17 958 19 HOH HOH . J 6 HOH A 18 959 20 HOH HOH . J 6 HOH A 19 960 21 HOH HOH . J 6 HOH A 20 961 22 HOH HOH . J 6 HOH A 21 962 23 HOH HOH . J 6 HOH A 22 963 24 HOH HOH . J 6 HOH A 23 964 25 HOH HOH . J 6 HOH A 24 965 26 HOH HOH . J 6 HOH A 25 966 27 HOH HOH . J 6 HOH A 26 967 28 HOH HOH . J 6 HOH A 27 968 29 HOH HOH . J 6 HOH A 28 969 30 HOH HOH . J 6 HOH A 29 970 31 HOH HOH . J 6 HOH A 30 971 32 HOH HOH . J 6 HOH A 31 972 33 HOH HOH . J 6 HOH A 32 973 34 HOH HOH . J 6 HOH A 33 974 35 HOH HOH . J 6 HOH A 34 975 36 HOH HOH . J 6 HOH A 35 976 37 HOH HOH . J 6 HOH A 36 977 38 HOH HOH . J 6 HOH A 37 978 39 HOH HOH . J 6 HOH A 38 979 41 HOH HOH . J 6 HOH A 39 980 42 HOH HOH . J 6 HOH A 40 981 43 HOH HOH . J 6 HOH A 41 982 44 HOH HOH . J 6 HOH A 42 983 45 HOH HOH . J 6 HOH A 43 984 47 HOH HOH . J 6 HOH A 44 985 48 HOH HOH . J 6 HOH A 45 986 49 HOH HOH . J 6 HOH A 46 987 50 HOH HOH . J 6 HOH A 47 988 51 HOH HOH . J 6 HOH A 48 989 52 HOH HOH . J 6 HOH A 49 990 53 HOH HOH . J 6 HOH A 50 991 54 HOH HOH . J 6 HOH A 51 992 55 HOH HOH . J 6 HOH A 52 993 56 HOH HOH . J 6 HOH A 53 994 57 HOH HOH . J 6 HOH A 54 995 58 HOH HOH . J 6 HOH A 55 996 59 HOH HOH . J 6 HOH A 56 997 60 HOH HOH . J 6 HOH A 57 998 61 HOH HOH . J 6 HOH A 58 999 62 HOH HOH . J 6 HOH A 59 1000 63 HOH HOH . J 6 HOH A 60 1001 65 HOH HOH . J 6 HOH A 61 1002 67 HOH HOH . J 6 HOH A 62 1003 68 HOH HOH . J 6 HOH A 63 1004 69 HOH HOH . J 6 HOH A 64 1005 70 HOH HOH . J 6 HOH A 65 1006 71 HOH HOH . J 6 HOH A 66 1007 72 HOH HOH . J 6 HOH A 67 1008 73 HOH HOH . J 6 HOH A 68 1009 74 HOH HOH . J 6 HOH A 69 1010 75 HOH HOH . J 6 HOH A 70 1011 76 HOH HOH . J 6 HOH A 71 1012 78 HOH HOH . J 6 HOH A 72 1013 79 HOH HOH . J 6 HOH A 73 1014 80 HOH HOH . J 6 HOH A 74 1015 81 HOH HOH . J 6 HOH A 75 1016 82 HOH HOH . J 6 HOH A 76 1017 83 HOH HOH . J 6 HOH A 77 1018 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 1.293 _atom_site.Cartn_y 46.199 _atom_site.Cartn_z 12.15 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 939 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #