data_1QAB # _model_server_result.job_id ZodE_nNb4RvtR3Z-PyuV8w _model_server_result.datetime_utc '2024-12-26 06:11:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2}' # _entry.id 1QAB # _exptl.entry_id 1QAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QAB _cell.length_a 140.23 _cell.length_b 140.23 _cell.length_c 124.08 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QAB _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 1 E CYS 4 1_555 E SG CYS 157 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 E SG CYS 67 E CYS 70 1_555 E SG CYS 171 E CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 E SG CYS 117 E CYS 120 1_555 E SG CYS 126 E CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 F SG CYS 67 F CYS 70 1_555 F SG CYS 171 F CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 F SG CYS 117 F CYS 120 1_555 F SG CYS 126 F CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 275 n n C1 C6 RTL sing 276 n n C1 C16 RTL sing 277 n n C1 C17 RTL sing 278 n n C2 C3 RTL sing 279 n n C2 H21 RTL sing 280 n n C2 H22 RTL sing 281 n n C3 C4 RTL sing 282 n n C3 H31 RTL sing 283 n n C3 H32 RTL sing 284 n n C4 C5 RTL sing 285 n n C4 H41 RTL sing 286 n n C4 H42 RTL sing 287 n n C5 C6 RTL doub 288 n n C5 C18 RTL sing 289 n n C6 C7 RTL sing 290 n n C7 C8 RTL doub 291 e n C7 H7 RTL sing 292 n n C8 C9 RTL sing 293 n n C8 H8 RTL sing 294 n n C9 C10 RTL doub 295 e n C9 C19 RTL sing 296 n n C10 C11 RTL sing 297 n n C10 H10 RTL sing 298 n n C11 C12 RTL doub 299 e n C11 H11 RTL sing 300 n n C12 C13 RTL sing 301 n n C12 H12 RTL sing 302 n n C13 C14 RTL doub 303 e n C13 C20 RTL sing 304 n n C14 C15 RTL sing 305 n n C14 H14 RTL sing 306 n n C15 O1 RTL sing 307 n n C15 H151 RTL sing 308 n n C15 H152 RTL sing 309 n n O1 HO1 RTL sing 310 n n C16 H161 RTL sing 311 n n C16 H162 RTL sing 312 n n C16 H163 RTL sing 313 n n C17 H171 RTL sing 314 n n C17 H172 RTL sing 315 n n C17 H173 RTL sing 316 n n C18 H181 RTL sing 317 n n C18 H182 RTL sing 318 n n C18 H183 RTL sing 319 n n C19 H191 RTL sing 320 n n C19 H192 RTL sing 321 n n C19 H193 RTL sing 322 n n C20 H201 RTL sing 323 n n C20 H202 RTL sing 324 n n C20 H203 RTL sing 325 n n # _atom_sites.entry_id 1QAB _atom_sites.fract_transf_matrix[1][1] 0.007131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 RTL E 1 1 1 RTL RTL . H 3 RTL F 1 2 2 RTL RTL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . H 3 -69.325 20.169 24.736 1 52.23 ? C1 RTL 2 F 1 HETATM 2 C C2 RTL . . . H 3 -67.797 20.365 24.837 1 52.23 ? C2 RTL 2 F 1 HETATM 3 C C3 RTL . . . H 3 -67.328 21.797 24.974 1 52.23 ? C3 RTL 2 F 1 HETATM 4 C C4 RTL . . . H 3 -68.492 22.764 24.995 1 52.23 ? C4 RTL 2 F 1 HETATM 5 C C5 RTL . . . H 3 -69.689 22.248 25.786 1 52.23 ? C5 RTL 2 F 1 HETATM 6 C C6 RTL . . . H 3 -70.153 20.948 25.802 1 52.23 ? C6 RTL 2 F 1 HETATM 7 C C7 RTL . . . H 3 -71.633 20.837 25.843 1 52.23 ? C7 RTL 2 F 1 HETATM 8 C C8 RTL . . . H 3 -72.492 21.85 25.462 1 52.23 ? C8 RTL 2 F 1 HETATM 9 C C9 RTL . . . H 3 -73.914 21.5 25.611 1 52.23 ? C9 RTL 2 F 1 HETATM 10 C C10 RTL . . . H 3 -74.653 22.511 25.058 1 52.23 ? C10 RTL 2 F 1 HETATM 11 C C11 RTL . . . H 3 -76.08 22.191 25.204 1 52.23 ? C11 RTL 2 F 1 HETATM 12 C C12 RTL . . . H 3 -76.838 23.172 24.649 1 52.23 ? C12 RTL 2 F 1 HETATM 13 C C13 RTL . . . H 3 -78.26 23.037 24.961 1 52.23 ? C13 RTL 2 F 1 HETATM 14 C C14 RTL . . . H 3 -78.92 24.058 24.332 1 52.23 ? C14 RTL 2 F 1 HETATM 15 C C15 RTL . . . H 3 -80.347 23.971 24.599 1 52.23 ? C15 RTL 2 F 1 HETATM 16 O O1 RTL . . . H 3 -80.965 24.994 23.961 1 52.23 ? O1 RTL 2 F 1 HETATM 17 C C16 RTL . . . H 3 -69.399 18.736 25.178 1 52.23 ? C16 RTL 2 F 1 HETATM 18 C C17 RTL . . . H 3 -69.734 20.275 23.28 1 52.23 ? C17 RTL 2 F 1 HETATM 19 C C18 RTL . . . H 3 -70.22 23.387 26.629 1 52.23 ? C18 RTL 2 F 1 HETATM 20 C C19 RTL . . . H 3 -74.082 20.152 26.324 1 52.23 ? C19 RTL 2 F 1 HETATM 21 C C20 RTL . . . H 3 -78.882 21.71 24.495 1 52.23 ? C20 RTL 2 F 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #