data_1QAQ
#
_model_server_result.job_id            X0w31A2T9bnqda412uA4kg 
_model_server_result.datetime_utc      '2025-02-01 09:40:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qaq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":245}' 
#
_entry.id    1QAQ 
#
_exptl.entry_id    1QAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.387 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SINEFUNGIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1QAQ 
_cell.length_a            80.93 
_cell.length_b            80.93 
_cell.length_c            120.63 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QAQ 
_symmetry.cell_setting             tetragonal 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N7 O5' 
_chem_comp.formula_weight    381.387 
_chem_comp.id                SFG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SINEFUNGIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ADENOSYL-ORNITHINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SFG sing 288 n n 
N HN1 SFG sing 289 n n 
N HN2 SFG sing 290 n n 
CA C SFG sing 291 n n 
CA CB SFG sing 292 n n 
CA HA SFG sing 293 n n 
C O SFG doub 294 n n 
C OXT SFG sing 295 n n 
OXT HXT SFG sing 296 n n 
CB CG SFG sing 297 n n 
CB HB1 SFG sing 298 n n 
CB HB2 SFG sing 299 n n 
CG CD SFG sing 300 n n 
CG HG1 SFG sing 301 n n 
CG HG2 SFG sing 302 n n 
CD NE SFG sing 303 n n 
CD C5' SFG sing 304 n n 
CD HD SFG sing 305 n n 
NE HNE1 SFG sing 306 n n 
NE HNE2 SFG sing 307 n n 
C5' C4' SFG sing 308 n n 
C5' "H5'1" SFG sing 309 n n 
C5' "H5'2" SFG sing 310 n n 
C4' O4' SFG sing 311 n n 
C4' C3' SFG sing 312 n n 
C4' H4' SFG sing 313 n n 
O4' C1' SFG sing 314 n n 
C3' O3' SFG sing 315 n n 
C3' C2' SFG sing 316 n n 
C3' H3' SFG sing 317 n n 
O3' HO3' SFG sing 318 n n 
C2' O2' SFG sing 319 n n 
C2' C1' SFG sing 320 n n 
C2' H2' SFG sing 321 n n 
O2' HO2' SFG sing 322 n n 
C1' N9 SFG sing 323 n n 
C1' H1' SFG sing 324 n n 
N9 C8 SFG sing 325 n y 
N9 C4 SFG sing 326 n y 
C8 N7 SFG doub 327 n y 
C8 H8 SFG sing 328 n n 
N7 C5 SFG sing 329 n y 
C5 C6 SFG sing 330 n y 
C5 C4 SFG doub 331 n y 
C6 N6 SFG sing 332 n n 
C6 N1 SFG doub 333 n y 
N6 HN61 SFG sing 334 n n 
N6 HN62 SFG sing 335 n n 
N1 C2 SFG sing 336 n y 
C2 N3 SFG doub 337 n y 
C2 H2 SFG sing 338 n n 
N3 C4 SFG sing 339 n y 
#
_atom_sites.entry_id                     1QAQ 
_atom_sites.fract_transf_matrix[1][1]    0.012356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012356 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           SFG 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      245 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       SFG 
_pdbx_nonpoly_scheme.auth_mon_id      SFG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SFG . . . B 2 12.111 36.981 22.673 1 32.89 ? N SFG 245 A 1 
HETATM 2 C CA SFG . . . B 2 13.076 37.683 21.834 1 34.05 ? CA SFG 245 A 1 
HETATM 3 C C SFG . . . B 2 12.514 37.472 20.439 1 35.31 ? C SFG 245 A 1 
HETATM 4 O O SFG . . . B 2 12.187 38.44 19.782 1 36.51 ? O SFG 245 A 1 
HETATM 5 O OXT SFG . . . B 2 12.41 36.341 19.994 1 38.8 ? OXT SFG 245 A 1 
HETATM 6 C CB SFG . . . B 2 14.551 37.205 21.973 1 30.33 ? CB SFG 245 A 1 
HETATM 7 C CG SFG . . . B 2 14.789 35.701 21.695 1 29.09 ? CG SFG 245 A 1 
HETATM 8 C CD SFG . . . B 2 16.26 35.319 21.426 1 31.46 ? CD SFG 245 A 1 
HETATM 9 N NE SFG . . . B 2 16.356 34.351 20.345 1 33.04 ? NE SFG 245 A 1 
HETATM 10 C C5' SFG . . . B 2 17.03 34.728 22.635 1 30.9 ? C5' SFG 245 A 1 
HETATM 11 C C4' SFG . . . B 2 16.99 35.594 23.909 1 33.9 ? C4' SFG 245 A 1 
HETATM 12 O O4' SFG . . . B 2 17.312 34.844 25.061 1 36.4 ? O4' SFG 245 A 1 
HETATM 13 C C3' SFG . . . B 2 17.939 36.79 23.884 1 35.04 ? C3' SFG 245 A 1 
HETATM 14 O O3' SFG . . . B 2 17.323 37.976 24.419 1 35.6 ? O3' SFG 245 A 1 
HETATM 15 C C2' SFG . . . B 2 19.085 36.357 24.789 1 34.49 ? C2' SFG 245 A 1 
HETATM 16 O O2' SFG . . . B 2 19.635 37.493 25.465 1 33.99 ? O2' SFG 245 A 1 
HETATM 17 C C1' SFG . . . B 2 18.369 35.447 25.777 1 34.23 ? C1' SFG 245 A 1 
HETATM 18 N N9 SFG . . . B 2 19.269 34.405 26.328 1 31.65 ? N9 SFG 245 A 1 
HETATM 19 C C8 SFG . . . B 2 20.289 33.729 25.732 1 31.91 ? C8 SFG 245 A 1 
HETATM 20 N N7 SFG . . . B 2 20.913 32.831 26.531 1 31.27 ? N7 SFG 245 A 1 
HETATM 21 C C5 SFG . . . B 2 20.239 32.927 27.731 1 32.67 ? C5 SFG 245 A 1 
HETATM 22 C C6 SFG . . . B 2 20.347 32.309 28.955 1 33.17 ? C6 SFG 245 A 1 
HETATM 23 N N6 SFG . . . B 2 21.288 31.377 29.154 1 36.85 ? N6 SFG 245 A 1 
HETATM 24 N N1 SFG . . . B 2 19.534 32.596 30.005 1 31.5 ? N1 SFG 245 A 1 
HETATM 25 C C2 SFG . . . B 2 18.571 33.549 29.816 1 33.07 ? C2 SFG 245 A 1 
HETATM 26 N N3 SFG . . . B 2 18.378 34.211 28.658 1 32.41 ? N3 SFG 245 A 1 
HETATM 27 C C4 SFG . . . B 2 19.211 33.908 27.615 1 31.93 ? C4 SFG 245 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           193 
_model_server_stats.create_model_time_ms    114 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#